Wall clock time and date at job start Fri Apr 10 2020 18:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00296 * 2 1 4 4 C 1.52999 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46881 * 65.60127 * 4 3 2 6 6 C 1.46904 * 110.99730 * 287.08933 * 5 4 3 7 7 C 1.50704 * 109.47325 * 302.70713 * 6 5 4 8 8 H 1.08008 * 119.99764 * 4.44551 * 7 6 5 9 9 C 1.37876 * 120.00372 * 184.44540 * 7 6 5 10 10 N 1.31514 * 119.99497 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00081 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47282 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47201 * 120.00309 * 11 9 7 14 14 H 1.48504 * 109.47333 * 239.99689 * 11 9 7 15 15 C 1.38303 * 110.99882 * 163.14000 * 5 4 3 16 16 N 1.31483 * 126.36323 * 16.62802 * 15 5 4 17 17 N 1.28516 * 110.06584 * 179.82140 * 16 15 5 18 18 C 1.31289 * 109.91456 * 0.44728 * 17 16 15 19 19 C 1.47776 * 126.47015 * 179.76113 * 18 17 16 20 20 C 1.39953 * 120.20325 * 359.96490 * 19 18 17 21 21 C 1.38566 * 117.87757 * 179.97438 * 20 19 18 22 22 C 1.38791 * 118.08632 * 359.97438 * 21 20 19 23 23 N 1.31947 * 120.11704 * 0.02562 * 22 21 20 24 24 N 1.28359 * 122.32855 * 359.66012 * 23 22 21 25 25 N 1.36358 * 126.36426 * 196.93647 * 15 5 4 26 26 C 1.46497 * 127.15807 * 0.02562 * 25 15 5 27 27 H 1.09001 * 109.47372 * 60.00357 * 1 2 3 28 28 H 1.09006 * 109.47538 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47752 * 300.00215 * 1 2 3 30 30 H 1.09002 * 109.47008 * 59.99177 * 3 2 1 31 31 H 1.09003 * 109.46805 * 299.99609 * 3 2 1 32 32 H 1.09003 * 109.46854 * 185.59621 * 4 3 2 33 33 H 1.08998 * 109.46911 * 305.59462 * 4 3 2 34 34 H 1.08994 * 109.47033 * 62.70644 * 6 5 4 35 35 H 1.08995 * 109.47074 * 182.70727 * 6 5 4 36 36 H 0.97007 * 119.99860 * 180.02562 * 10 9 7 37 37 H 1.08002 * 121.06669 * 0.02562 * 20 19 18 38 38 H 1.08004 * 120.96231 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.94017 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47105 * 95.59754 * 26 25 15 41 41 H 1.08996 * 109.47323 * 215.60140 * 26 25 15 42 42 H 1.09003 * 109.47037 * 335.59759 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9788 0.5753 -1.2604 6 6 3.6601 -0.8584 -1.2930 7 6 4.2999 -1.5423 -0.1123 8 1 4.8242 -0.9593 0.6305 9 6 4.2160 -2.9122 0.0197 10 7 3.5779 -3.6220 -0.8851 11 14 5.0084 -3.7597 1.4835 12 1 5.6593 -2.7449 2.3504 13 1 3.9685 -4.4805 2.2608 14 1 6.0270 -4.7278 1.0032 15 6 5.3301 0.7873 -1.4650 16 7 6.2069 1.1596 -0.5586 17 7 7.3735 1.2590 -1.0884 18 6 7.3108 0.9657 -2.3666 19 6 8.4359 0.9682 -3.3246 20 6 9.7244 1.3076 -2.8965 21 6 10.7437 1.2937 -3.8351 22 6 10.4255 0.9442 -5.1401 23 7 9.1824 0.6375 -5.4591 24 7 8.2316 0.6414 -4.5968 25 7 5.9996 0.6549 -2.6455 26 6 5.4394 0.2637 -3.9414 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.9784 2.1755 0.1009 33 1 3.8500 0.5597 0.8365 34 1 2.5792 -0.9913 -1.2480 35 1 4.0417 -1.2945 -2.2161 36 1 3.5185 -4.5858 -0.7921 37 1 9.9184 1.5712 -1.8673 38 1 11.7567 1.5468 -3.5591 39 1 11.1966 0.9240 -5.8960 40 1 5.2048 1.1569 -4.5204 41 1 6.1664 -0.3405 -4.4840 42 1 4.5301 -0.3164 -3.7839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908560685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:27 Heat of formation + Delta-G solvation = 96.937700 kcal Electronic energy + Delta-G solvation = -27114.163616 eV Core-core repulsion = 23324.773926 eV Total energy + Delta-G solvation = -3789.389689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.94106 -41.86079 -39.50163 -37.72565 -36.01239 -34.74939 -34.40227 -33.89678 -31.15038 -30.40843 -28.85649 -28.04121 -26.96801 -26.02033 -25.57684 -24.58984 -23.51087 -22.29234 -21.34658 -18.93788 -18.68739 -18.22710 -17.80445 -17.66960 -17.30197 -16.98240 -16.94568 -16.61420 -16.04568 -15.87971 -15.59243 -15.17014 -14.80969 -14.65963 -14.26491 -14.13267 -13.91544 -13.44826 -13.30788 -13.02257 -12.83056 -12.71587 -12.58757 -12.51618 -12.20016 -12.12850 -12.06391 -11.70919 -11.62872 -11.56892 -11.25414 -11.06023 -10.75794 -10.64191 -10.29684 -10.21537 -9.16541 -8.18905 -6.28119 -0.56631 -0.20247 0.91173 1.27243 1.29559 1.31996 1.44084 1.72597 2.36540 2.42687 2.60274 2.99425 3.08738 3.15480 3.32690 3.53730 3.76761 3.79724 3.93412 4.05968 4.15819 4.20099 4.32033 4.33178 4.49842 4.52431 4.62312 4.63776 4.68494 4.75800 4.81195 4.95526 4.99406 5.02398 5.12101 5.13011 5.23465 5.45549 5.59722 5.75708 5.80635 6.10802 6.35848 6.53973 6.82806 7.38161 7.53967 7.60264 8.87478 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.004258 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.100735 B = 6574.389460 C = 7487.142349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.074 3.926 4 C 0.073 3.927 5 N -0.455 5.455 6 C 0.206 3.794 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.023 3.977 10 N -0.918 5.918 11 Si 0.941 3.059 12 H -0.277 1.277 13 H -0.271 1.271 14 H -0.284 1.284 15 C 0.402 3.598 16 N -0.349 5.349 17 N -0.274 5.274 18 C 0.189 3.811 19 C 0.137 3.863 20 C -0.093 4.093 21 C -0.086 4.086 22 C 0.046 3.954 23 N -0.268 5.268 24 N -0.263 5.263 25 N -0.462 5.462 26 C 0.087 3.913 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.005 0.995 36 H 0.263 0.737 37 H 0.169 0.831 38 H 0.208 0.792 39 H 0.221 0.779 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 12.044 -6.824 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.003 4.003 4 C -0.054 4.054 5 N -0.179 5.179 6 C 0.082 3.918 7 C -0.577 4.577 8 H 0.068 0.932 9 C -0.177 4.177 10 N -0.559 5.559 11 Si 0.768 3.232 12 H -0.202 1.202 13 H -0.197 1.197 14 H -0.210 1.210 15 C 0.045 3.955 16 N -0.196 5.196 17 N -0.118 5.118 18 C -0.077 4.077 19 C -0.009 4.009 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.118 4.118 23 N -0.109 5.109 24 N -0.107 5.107 25 N -0.154 5.154 26 C -0.055 4.055 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.187 0.813 38 H 0.225 0.775 39 H 0.238 0.762 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.196 11.833 -7.156 15.589 hybrid contribution 0.655 -1.056 1.259 1.769 sum 7.851 10.777 -5.898 14.579 Atomic orbital electron populations 1.22800 0.80863 1.02590 1.00615 1.88235 1.20349 1.27900 1.95190 1.22529 0.91271 0.85099 1.01361 1.22083 0.95061 0.99035 0.89248 1.59416 1.04639 1.18035 1.35798 1.19897 0.98967 0.78134 0.94822 1.21803 1.34030 0.92707 1.09154 0.93213 1.25482 0.95774 0.98045 0.98368 1.70021 1.43428 1.06645 1.35780 0.85759 0.78513 0.78471 0.80491 1.20168 1.19669 1.20993 1.22782 0.92165 0.98003 0.82556 1.74628 0.95447 1.25449 1.24089 1.74024 1.16132 1.18081 1.03525 1.22102 0.83629 1.08380 0.93603 1.19760 0.91015 0.98760 0.91372 1.22585 0.90580 0.95345 1.03737 1.22954 1.02304 0.94132 0.92012 1.25173 0.95687 0.92721 0.98235 1.72950 1.00115 1.11627 1.26163 1.73198 1.26770 1.11364 0.99385 1.46101 1.07720 1.50897 1.10664 1.22252 1.00495 1.02716 0.79994 0.93207 0.90683 0.92766 0.90350 0.91893 0.88981 0.93321 0.91051 0.97690 0.92825 0.81346 0.77463 0.76247 0.88338 0.88266 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -15.45 7.68 -148.98 -1.14 -16.59 16 3 C 0.07 2.42 6.25 71.98 0.45 2.87 16 4 C 0.07 2.89 4.83 86.30 0.42 3.31 16 5 N -0.45 -20.01 4.64 -710.51 -3.30 -23.31 16 6 C 0.21 10.60 4.46 85.56 0.38 10.99 16 7 C -0.54 -30.65 7.72 25.60 0.20 -30.45 16 8 H 0.05 2.97 6.31 -2.91 -0.02 2.95 16 9 C 0.02 1.32 5.46 84.65 0.46 1.78 16 10 N -0.92 -54.65 13.29 21.45 0.28 -54.36 16 11 Si 0.94 46.61 29.54 68.60 2.03 48.63 16 12 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 13 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 15 C 0.40 18.09 6.09 260.18 1.58 19.67 16 16 N -0.35 -16.30 11.28 -58.10 -0.66 -16.95 16 17 N -0.27 -11.72 11.93 -50.81 -0.61 -12.33 16 18 C 0.19 7.39 7.83 136.17 1.07 8.46 16 19 C 0.14 4.27 6.83 41.92 0.29 4.55 16 20 C -0.09 -2.05 9.84 22.76 0.22 -1.82 16 21 C -0.09 -1.10 10.20 22.48 0.23 -0.87 16 22 C 0.05 0.69 11.31 84.81 0.96 1.65 16 23 N -0.27 -6.81 11.50 -57.13 -0.66 -7.47 16 24 N -0.26 -8.13 9.18 -48.55 -0.45 -8.57 16 25 N -0.46 -18.85 3.23 -540.24 -1.75 -20.60 16 26 C 0.09 2.99 10.39 127.77 1.33 4.32 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 28 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.09 3.34 7.75 -2.39 -0.02 3.32 16 33 H 0.05 2.25 5.88 -2.39 -0.01 2.24 16 34 H 0.07 3.85 5.48 -2.39 -0.01 3.84 16 35 H 0.01 0.28 6.28 -2.39 -0.02 0.27 16 36 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 37 H 0.17 3.43 7.93 -2.91 -0.02 3.41 16 38 H 0.21 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.22 1.11 8.06 -2.91 -0.02 1.08 16 40 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.10 3.34 6.63 -2.39 -0.02 3.33 16 42 H 0.08 3.10 6.20 -2.39 -0.01 3.08 16 Total: -1.00 -77.70 351.52 3.65 -74.06 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.05 Total: 10.99 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 8.83 Total: 26.51 kcal Atomic # 7 Polarization: -136.48 SS G_CDS: -7.12 Total: -143.60 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -1.14 Total: -16.59 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -77.70 3.65 -74.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908560685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.994 kcal (2) G-P(sol) polarization free energy of solvation -77.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds