Wall clock time and date at job start Fri Apr 10 2020 18:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46894 * 111.00348 * 2 1 4 4 C 1.53698 * 109.25897 * 172.60549 * 3 2 1 5 5 N 1.47084 * 108.27588 * 54.08439 * 4 3 2 6 6 C 1.34780 * 120.88070 * 128.75254 * 5 4 3 7 7 O 1.21280 * 119.99484 * 174.48617 * 6 5 4 8 8 C 1.50697 * 120.00084 * 354.48386 * 6 5 4 9 9 C 1.50701 * 109.47141 * 179.97438 * 8 6 5 10 10 C 1.37638 * 120.12695 * 265.00211 * 9 8 6 11 11 C 1.38606 * 120.24631 * 180.02562 * 10 9 8 12 12 C 1.38661 * 120.50495 * 359.97438 * 11 10 9 13 13 C 1.37595 * 120.24269 * 0.02562 * 12 11 10 14 14 C 1.40693 * 120.12636 * 85.02065 * 9 8 6 15 15 C 1.41398 * 120.24625 * 359.96111 * 14 9 8 16 16 H 1.08002 * 119.99662 * 333.41902 * 15 14 9 17 17 C 1.39946 * 120.00391 * 153.41899 * 15 14 9 18 18 N 1.30825 * 119.99919 * 353.27036 * 17 15 14 19 19 Si 1.86798 * 120.00149 * 173.26730 * 17 15 14 20 20 H 1.48495 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47030 * 120.00061 * 19 17 15 22 22 H 1.48498 * 109.47034 * 240.00086 * 19 17 15 23 23 C 1.47079 * 118.23663 * 308.48824 * 5 4 3 24 24 H 1.09009 * 109.62419 * 291.74504 * 23 5 4 25 25 C 1.52999 * 109.62983 * 171.36232 * 23 5 4 26 26 O 1.42897 * 109.47048 * 297.68616 * 25 23 5 27 27 C 1.46902 * 110.99913 * 235.69594 * 2 1 3 28 28 H 1.09000 * 109.47811 * 184.29943 * 1 2 3 29 29 H 1.09000 * 109.47180 * 304.30204 * 1 2 3 30 30 H 1.09003 * 109.47262 * 64.30098 * 1 2 3 31 31 H 1.09006 * 109.49413 * 292.70820 * 3 2 1 32 32 H 1.09004 * 109.49185 * 52.78476 * 3 2 1 33 33 H 1.08995 * 109.79815 * 294.42348 * 4 3 2 34 34 H 1.08999 * 109.70074 * 173.68951 * 4 3 2 35 35 H 1.09002 * 109.46979 * 59.99636 * 8 6 5 36 36 H 1.09002 * 109.46862 * 299.99976 * 8 6 5 37 37 H 1.08002 * 119.87713 * 0.04166 * 10 9 8 38 38 H 1.08006 * 119.74955 * 179.97438 * 11 10 9 39 39 H 1.07996 * 119.87620 * 179.74899 * 12 11 10 40 40 H 1.08007 * 120.12371 * 179.97438 * 13 12 11 41 41 H 0.96996 * 120.00457 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.47166 * 57.68813 * 25 23 5 43 43 H 1.08998 * 109.47273 * 177.68946 * 25 23 5 44 44 H 0.96701 * 114.00293 * 180.02562 * 26 25 23 45 45 H 1.09003 * 109.49115 * 67.29993 * 27 2 1 46 46 H 1.09000 * 109.49813 * 307.21799 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 3.5204 1.3289 0.1867 5 7 4.0870 0.4459 -0.8442 6 6 5.1056 0.8582 -1.6245 7 8 5.6266 0.0850 -2.4002 8 6 5.5970 2.2799 -1.5333 9 6 6.7337 2.4816 -2.5020 10 6 8.0359 2.3518 -2.0758 11 6 9.0833 2.5373 -2.9645 12 6 8.8330 2.8547 -4.2909 13 6 7.5390 2.9894 -4.7390 14 6 6.4677 2.8037 -3.8455 15 6 5.1339 2.9392 -4.2949 16 1 4.3384 2.4087 -3.7927 17 6 4.8445 3.7607 -5.3903 18 7 5.7835 4.5046 -5.9161 19 14 3.1177 3.7949 -6.1017 20 1 2.2470 2.8702 -5.3323 21 1 2.5736 5.1739 -6.0146 22 1 3.1596 3.3682 -7.5235 23 6 3.5163 -0.9011 -0.9968 24 1 3.7561 -1.5019 -0.1194 25 6 4.0942 -1.5653 -2.2481 26 8 3.7248 -0.8088 -3.4027 27 6 1.9954 -0.7729 -1.1329 28 1 -0.3635 -1.0247 0.0770 29 1 -0.3633 0.5791 0.8489 30 1 -0.3634 0.4456 -0.9260 31 1 1.7555 1.8531 -0.9479 32 1 1.5456 1.9336 0.8183 33 1 3.7605 0.9383 1.1756 34 1 3.9322 2.3320 0.0762 35 1 5.9442 2.4799 -0.5196 36 1 4.7834 2.9620 -1.7800 37 1 8.2425 2.1042 -1.0450 38 1 10.1021 2.4339 -2.6213 39 1 9.6568 3.0010 -4.9737 40 1 7.3463 3.2370 -5.7725 41 1 5.5831 5.0738 -6.6755 42 1 5.1808 -1.6028 -2.1706 43 1 3.7012 -2.5781 -2.3363 44 1 4.0574 -1.1729 -4.2345 45 1 1.7555 -0.2613 -2.0650 46 1 1.5455 -1.7658 -1.1363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912739928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:30 Heat of formation + Delta-G solvation = -33.622142 kcal Electronic energy + Delta-G solvation = -28434.036477 eV Core-core repulsion = 24710.232880 eV Total energy + Delta-G solvation = -3723.803597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18210 -38.01159 -37.10030 -35.90114 -34.20475 -33.53555 -32.11758 -31.05317 -29.33162 -28.65180 -26.73108 -26.04461 -24.89766 -24.08856 -22.04550 -21.22825 -20.80955 -19.64305 -18.31940 -17.12508 -17.06406 -16.53285 -15.74654 -15.45442 -14.96707 -14.85374 -14.82981 -14.61223 -14.29692 -13.75181 -13.53587 -13.46873 -13.13460 -12.95361 -12.77061 -12.52002 -12.02615 -11.98591 -11.68699 -11.62344 -11.47775 -11.25834 -11.22868 -11.05676 -10.93031 -10.89865 -10.58805 -10.55199 -10.27199 -9.70187 -9.45837 -9.23558 -9.15283 -8.58001 -8.28515 -8.05169 -7.22158 -7.17914 -6.57662 -4.27649 2.82519 3.02262 3.11274 3.18602 3.32180 3.40064 3.47806 3.88189 4.00962 4.66255 4.77189 4.87777 4.90413 5.08599 5.24184 5.28440 5.40220 5.41697 5.54098 5.59072 5.69411 5.70420 5.70885 5.76057 5.87669 5.92807 6.08065 6.16612 6.22945 6.32161 6.34343 6.49926 6.58390 6.85599 6.87609 6.92162 7.00727 7.18569 7.40398 7.53644 7.73653 7.94619 8.01878 8.20551 8.20983 8.22062 8.40858 8.77107 9.01593 9.03205 9.10915 10.31508 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.005484 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.500497 B = 5104.744786 C = 6257.538240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.038 3.962 4 C 0.116 3.884 5 N -0.623 5.623 6 C 0.529 3.471 7 O -0.505 6.505 8 C -0.070 4.070 9 C -0.175 4.175 10 C -0.086 4.086 11 C -0.237 4.237 12 C -0.112 4.112 13 C -0.158 4.158 14 C 0.125 3.875 15 C -0.444 4.444 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.806 5.806 19 Si 0.906 3.094 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.274 1.274 23 C 0.158 3.842 24 H 0.080 0.920 25 C 0.072 3.928 26 O -0.553 6.553 27 C 0.047 3.953 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.128 0.872 41 H 0.276 0.724 42 H 0.092 0.908 43 H 0.023 0.977 44 H 0.374 0.626 45 H 0.053 0.947 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.714 -6.911 9.917 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.091 4.091 4 C -0.008 4.008 5 N -0.360 5.360 6 C 0.319 3.681 7 O -0.379 6.379 8 C -0.110 4.110 9 C -0.177 4.177 10 C -0.104 4.104 11 C -0.257 4.257 12 C -0.130 4.130 13 C -0.177 4.177 14 C 0.123 3.877 15 C -0.474 4.474 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.433 5.433 19 Si 0.731 3.269 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.200 1.200 23 C 0.054 3.946 24 H 0.098 0.902 25 C -0.006 4.006 26 O -0.358 6.358 27 C -0.082 4.082 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.146 0.854 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.041 0.959 44 H 0.221 0.779 45 H 0.071 0.929 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.534 -7.000 10.166 15.006 hybrid contribution -0.952 0.159 -1.433 1.728 sum -9.486 -6.841 8.733 14.596 Atomic orbital electron populations 1.22336 0.87346 1.02043 1.00468 1.61962 1.07626 1.13763 1.43613 1.22607 0.95717 0.89447 1.01313 1.21830 0.92115 0.95340 0.91521 1.48208 1.36004 1.14465 1.37314 1.20987 0.78065 0.90524 0.78520 1.90519 1.56240 1.54421 1.36695 1.20310 0.99113 0.92796 0.98767 1.19093 0.91422 1.13200 0.93967 1.20273 0.92849 1.00405 0.96878 1.20313 0.96314 1.14241 0.94810 1.20714 0.96394 1.01026 0.94893 1.21585 0.90996 1.04500 1.00659 1.17367 0.93384 0.87674 0.89323 1.19576 0.93805 1.23066 1.10952 0.90545 1.25883 0.98786 0.94004 0.95729 1.69788 1.33683 1.19749 1.20085 0.86289 0.82688 0.78541 0.79368 1.18561 1.20213 1.19961 1.21272 0.91769 0.84368 0.97219 0.90211 1.22497 1.01670 0.91205 0.85266 1.86465 1.77934 1.55138 1.16258 1.22477 0.94984 0.98339 0.92384 0.91490 0.91413 0.95651 0.93871 0.89907 0.91181 0.88972 0.91091 0.88938 0.89939 0.89847 0.89738 0.85411 0.91312 0.89054 0.95897 0.77896 0.92883 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.58 60.06 0.58 0.83 16 2 N -0.55 -6.56 4.88 -242.31 -1.18 -7.74 16 3 C 0.04 0.46 5.64 -3.46 -0.02 0.44 16 4 C 0.12 1.47 6.54 -3.36 -0.02 1.45 16 5 N -0.62 -10.01 2.99 -164.64 -0.49 -10.50 16 6 C 0.53 10.48 6.80 -10.99 -0.07 10.40 16 7 O -0.50 -11.42 10.92 -18.30 -0.20 -11.62 16 8 C -0.07 -1.41 3.55 -29.04 -0.10 -1.51 16 9 C -0.17 -4.24 4.43 -103.91 -0.46 -4.70 16 10 C -0.09 -2.00 9.66 -39.66 -0.38 -2.38 16 11 C -0.24 -5.59 10.05 -39.29 -0.39 -5.99 16 12 C -0.11 -2.76 10.02 -39.66 -0.40 -3.16 16 13 C -0.16 -4.27 8.70 -38.88 -0.34 -4.61 16 14 C 0.12 3.36 5.60 -106.83 -0.60 2.76 16 15 C -0.44 -11.82 8.16 -37.74 -0.31 -12.13 16 16 H 0.08 2.05 6.66 -52.49 -0.35 1.70 16 17 C 0.07 1.82 5.34 -17.34 -0.09 1.73 16 18 N -0.81 -21.15 10.50 55.55 0.58 -20.57 16 19 Si 0.91 19.52 29.57 -169.99 -5.03 14.49 16 20 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C 0.16 2.30 3.43 -67.49 -0.23 2.07 16 24 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 25 C 0.07 1.12 5.80 37.16 0.22 1.34 16 26 O -0.55 -10.04 10.70 -59.09 -0.63 -10.67 16 27 C 0.05 0.63 4.84 -3.70 -0.02 0.61 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.12 6.01 -51.93 -0.31 0.80 16 35 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 36 H 0.09 1.88 6.82 -51.93 -0.35 1.53 16 37 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 39 H 0.08 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.13 3.57 5.89 -52.48 -0.31 3.27 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.09 1.64 5.78 -52.47 -0.30 1.33 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.37 5.89 9.12 45.56 0.42 6.30 16 45 H 0.05 0.86 7.44 -51.93 -0.39 0.48 16 46 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -31.20 359.98 -10.37 -41.57 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.20 Total: 12.46 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -2.65 Total: -12.85 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -1.09 Total: -38.81 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.83 Total: -22.29 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.20 -10.37 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912739928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.951 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds