Wall clock time and date at job start Fri Apr 10 2020 18:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46894 * 111.00348 * 2 1 4 4 C 1.53698 * 109.25897 * 172.60549 * 3 2 1 5 5 N 1.47084 * 108.27588 * 54.08439 * 4 3 2 6 6 C 1.34780 * 120.88070 * 128.75254 * 5 4 3 7 7 O 1.21280 * 119.99484 * 174.48617 * 6 5 4 8 8 C 1.50697 * 120.00084 * 354.48386 * 6 5 4 9 9 C 1.50701 * 109.47141 * 179.97438 * 8 6 5 10 10 C 1.37638 * 120.12695 * 265.00211 * 9 8 6 11 11 C 1.38606 * 120.24631 * 180.02562 * 10 9 8 12 12 C 1.38661 * 120.50495 * 359.97438 * 11 10 9 13 13 C 1.37595 * 120.24269 * 0.02562 * 12 11 10 14 14 C 1.40693 * 120.12636 * 85.02065 * 9 8 6 15 15 C 1.41398 * 120.24625 * 359.96111 * 14 9 8 16 16 H 1.08002 * 119.99662 * 333.41902 * 15 14 9 17 17 C 1.39946 * 120.00391 * 153.41899 * 15 14 9 18 18 N 1.30825 * 119.99919 * 353.27036 * 17 15 14 19 19 Si 1.86798 * 120.00149 * 173.26730 * 17 15 14 20 20 H 1.48495 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47030 * 120.00061 * 19 17 15 22 22 H 1.48498 * 109.47034 * 240.00086 * 19 17 15 23 23 C 1.47079 * 118.23663 * 308.48824 * 5 4 3 24 24 H 1.09009 * 109.62419 * 291.74504 * 23 5 4 25 25 C 1.52999 * 109.62983 * 171.36232 * 23 5 4 26 26 O 1.42897 * 109.47048 * 297.68616 * 25 23 5 27 27 C 1.46902 * 110.99913 * 235.69594 * 2 1 3 28 28 H 1.09000 * 109.47811 * 184.29943 * 1 2 3 29 29 H 1.09000 * 109.47180 * 304.30204 * 1 2 3 30 30 H 1.09003 * 109.47262 * 64.30098 * 1 2 3 31 31 H 1.09006 * 109.49413 * 292.70820 * 3 2 1 32 32 H 1.09004 * 109.49185 * 52.78476 * 3 2 1 33 33 H 1.08995 * 109.79815 * 294.42348 * 4 3 2 34 34 H 1.08999 * 109.70074 * 173.68951 * 4 3 2 35 35 H 1.09002 * 109.46979 * 59.99636 * 8 6 5 36 36 H 1.09002 * 109.46862 * 299.99976 * 8 6 5 37 37 H 1.08002 * 119.87713 * 0.04166 * 10 9 8 38 38 H 1.08006 * 119.74955 * 179.97438 * 11 10 9 39 39 H 1.07996 * 119.87620 * 179.74899 * 12 11 10 40 40 H 1.08007 * 120.12371 * 179.97438 * 13 12 11 41 41 H 0.96996 * 120.00457 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.47166 * 57.68813 * 25 23 5 43 43 H 1.08998 * 109.47273 * 177.68946 * 25 23 5 44 44 H 0.96701 * 114.00293 * 180.02562 * 26 25 23 45 45 H 1.09003 * 109.49115 * 67.29993 * 27 2 1 46 46 H 1.09000 * 109.49813 * 307.21799 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 3.5204 1.3289 0.1867 5 7 4.0870 0.4459 -0.8442 6 6 5.1056 0.8582 -1.6245 7 8 5.6266 0.0850 -2.4002 8 6 5.5970 2.2799 -1.5333 9 6 6.7337 2.4816 -2.5020 10 6 8.0359 2.3518 -2.0758 11 6 9.0833 2.5373 -2.9645 12 6 8.8330 2.8547 -4.2909 13 6 7.5390 2.9894 -4.7390 14 6 6.4677 2.8037 -3.8455 15 6 5.1339 2.9392 -4.2949 16 1 4.3384 2.4087 -3.7927 17 6 4.8445 3.7607 -5.3903 18 7 5.7835 4.5046 -5.9161 19 14 3.1177 3.7949 -6.1017 20 1 2.2470 2.8702 -5.3323 21 1 2.5736 5.1739 -6.0146 22 1 3.1596 3.3682 -7.5235 23 6 3.5163 -0.9011 -0.9968 24 1 3.7561 -1.5019 -0.1194 25 6 4.0942 -1.5653 -2.2481 26 8 3.7248 -0.8088 -3.4027 27 6 1.9954 -0.7729 -1.1329 28 1 -0.3635 -1.0247 0.0770 29 1 -0.3633 0.5791 0.8489 30 1 -0.3634 0.4456 -0.9260 31 1 1.7555 1.8531 -0.9479 32 1 1.5456 1.9336 0.8183 33 1 3.7605 0.9383 1.1756 34 1 3.9322 2.3320 0.0762 35 1 5.9442 2.4799 -0.5196 36 1 4.7834 2.9620 -1.7800 37 1 8.2425 2.1042 -1.0450 38 1 10.1021 2.4339 -2.6213 39 1 9.6568 3.0010 -4.9737 40 1 7.3463 3.2370 -5.7725 41 1 5.5831 5.0738 -6.6755 42 1 5.1808 -1.6028 -2.1706 43 1 3.7012 -2.5781 -2.3363 44 1 4.0574 -1.1729 -4.2345 45 1 1.7555 -0.2613 -2.0650 46 1 1.5455 -1.7658 -1.1363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912739928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:30 Heat of formation + Delta-G solvation = -54.266574 kcal Electronic energy + Delta-G solvation = -28434.931686 eV Core-core repulsion = 24710.232880 eV Total energy + Delta-G solvation = -3724.698806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49333 -39.58298 -38.57284 -37.25674 -35.47300 -35.41940 -33.62658 -32.44896 -31.26052 -29.81825 -28.28453 -27.27792 -26.76953 -25.08594 -23.30803 -22.73854 -22.44213 -21.29192 -19.71747 -18.99919 -18.44537 -17.82793 -17.31332 -16.92855 -16.31152 -16.17346 -15.96577 -15.80064 -15.79222 -15.29180 -15.23297 -14.93505 -14.44734 -14.36810 -14.23801 -14.03375 -13.47155 -13.31746 -13.07382 -12.88843 -12.82953 -12.77357 -12.70571 -12.54757 -12.45766 -12.28017 -12.23558 -12.09149 -11.73648 -11.34202 -11.14827 -11.06626 -11.05994 -9.73937 -9.65497 -9.23671 -9.15018 -9.09851 -8.49583 -6.28130 0.99486 1.17097 1.32686 1.46524 1.50105 1.94104 2.17227 2.19951 2.82666 2.91799 3.46424 3.73334 3.86056 3.92768 4.06186 4.20278 4.23034 4.30124 4.39544 4.43624 4.47241 4.55337 4.61388 4.63681 4.64755 4.69460 4.73180 4.79605 4.80540 4.92287 5.00100 5.04480 5.10025 5.14552 5.23740 5.45380 5.60581 5.72628 5.81748 5.95691 6.00161 6.08134 6.23298 6.26540 6.46184 6.62019 6.80356 6.94652 7.05023 7.15569 7.56196 8.41603 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.005484 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.500497 B = 5104.744786 C = 6257.538240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.040 3.960 4 C 0.109 3.891 5 N -0.619 5.619 6 C 0.526 3.474 7 O -0.543 6.543 8 C -0.067 4.067 9 C -0.178 4.178 10 C -0.095 4.095 11 C -0.238 4.238 12 C -0.122 4.122 13 C -0.191 4.191 14 C 0.094 3.906 15 C -0.464 4.464 16 H 0.064 0.936 17 C 0.031 3.969 18 N -0.835 5.835 19 Si 0.973 3.027 20 H -0.270 1.270 21 H -0.263 1.263 22 H -0.268 1.268 23 C 0.152 3.848 24 H 0.102 0.898 25 C 0.073 3.927 26 O -0.577 6.577 27 C 0.056 3.944 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.282 0.718 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.379 0.621 45 H 0.018 0.982 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.899 -7.500 12.396 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.089 4.089 4 C -0.014 4.014 5 N -0.355 5.355 6 C 0.315 3.685 7 O -0.420 6.420 8 C -0.107 4.107 9 C -0.180 4.180 10 C -0.113 4.113 11 C -0.257 4.257 12 C -0.140 4.140 13 C -0.210 4.210 14 C 0.092 3.908 15 C -0.495 4.495 16 H 0.082 0.918 17 C -0.181 4.181 18 N -0.463 5.463 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.187 1.187 22 H -0.193 1.193 23 C 0.049 3.951 24 H 0.120 0.880 25 C -0.005 4.005 26 O -0.382 6.382 27 C -0.072 4.072 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.226 0.774 45 H 0.036 0.964 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.738 -7.582 12.682 17.696 hybrid contribution -0.525 0.292 -2.102 2.186 sum -10.263 -7.290 10.581 16.445 Atomic orbital electron populations 1.22430 0.85785 1.03271 1.00732 1.62033 1.08997 1.13412 1.42283 1.22632 0.95404 0.89725 1.01109 1.22126 0.92518 0.95198 0.91539 1.48207 1.34806 1.15532 1.36952 1.20841 0.78901 0.89994 0.78724 1.90529 1.57882 1.55181 1.38384 1.20286 0.97668 0.93286 0.99465 1.19538 0.93371 1.11313 0.93796 1.20688 0.92395 0.99671 0.98523 1.20722 0.98063 1.12660 0.94217 1.20974 0.96078 1.00804 0.96169 1.21571 0.92422 1.06919 1.00126 1.17714 0.93567 0.88774 0.90780 1.19581 0.93624 1.24041 1.12219 0.91755 1.26605 1.02456 0.93343 0.95686 1.69859 1.35429 1.20335 1.20644 0.85289 0.77910 0.78803 0.78446 1.19434 1.18738 1.19323 1.21483 0.92455 0.83744 0.97402 0.88014 1.22507 1.00404 0.92590 0.85016 1.86440 1.78106 1.56441 1.17257 1.22345 0.94227 0.99272 0.91403 0.90118 0.89484 0.96750 0.96611 0.86830 0.88628 0.88570 0.87716 0.89769 0.86740 0.86800 0.87870 0.87425 0.90698 0.91591 0.92891 0.77405 0.96369 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.58 127.69 1.22 1.65 16 2 N -0.54 -11.62 4.88 -920.53 -4.49 -16.11 16 3 C 0.04 0.87 5.64 86.54 0.49 1.36 16 4 C 0.11 2.51 6.54 86.50 0.57 3.07 16 5 N -0.62 -19.19 2.99 -793.20 -2.38 -21.56 16 6 C 0.53 20.76 6.80 87.66 0.60 21.36 16 7 O -0.54 -25.06 10.92 19.78 0.22 -24.85 16 8 C -0.07 -2.68 3.55 29.10 0.10 -2.58 16 9 C -0.18 -8.69 4.43 -19.41 -0.09 -8.77 16 10 C -0.09 -4.29 9.66 22.22 0.21 -4.08 16 11 C -0.24 -10.89 10.05 22.46 0.23 -10.67 16 12 C -0.12 -6.08 10.02 22.22 0.22 -5.86 16 13 C -0.19 -10.70 8.70 22.73 0.20 -10.51 16 14 C 0.09 5.22 5.60 -21.29 -0.12 5.10 16 15 C -0.46 -25.77 8.16 23.46 0.19 -25.58 16 16 H 0.06 3.62 6.66 -2.91 -0.02 3.60 16 17 C 0.03 1.65 5.34 85.26 0.46 2.11 16 18 N -0.83 -45.35 10.50 21.83 0.23 -45.12 16 19 Si 0.97 41.22 29.57 68.60 2.03 43.25 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 C 0.15 4.22 3.43 44.96 0.15 4.38 16 24 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 25 C 0.07 2.25 5.80 71.98 0.42 2.67 16 26 O -0.58 -21.60 10.70 -126.17 -1.35 -22.95 16 27 C 0.06 1.42 4.84 86.38 0.42 1.84 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.14 8.08 -2.39 -0.02 1.13 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.02 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 2.13 6.01 -2.39 -0.01 2.11 16 35 H 0.10 3.35 7.69 -2.39 -0.02 3.33 16 36 H 0.08 3.47 6.82 -2.39 -0.02 3.46 16 37 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 40 H 0.11 6.36 5.89 -2.91 -0.02 6.35 16 41 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 42 H 0.07 2.40 5.78 -10.87 -0.06 2.34 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.38 12.62 9.12 -74.06 -0.68 11.94 16 45 H 0.02 0.59 7.44 -2.39 -0.02 0.57 16 46 H 0.10 2.03 8.11 -2.39 -0.02 2.01 16 Total: -1.00 -70.25 359.98 -0.21 -70.47 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: 0.27 Total: 41.38 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 5.27 Total: -24.50 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -6.64 Total: -82.80 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -1.13 Total: -47.80 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -70.25 -0.21 -70.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912739928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.199 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds