Wall clock time and date at job start Fri Apr 10 2020 18:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99944 * 2 1 4 4 H 1.09007 * 109.46998 * 29.99877 * 3 2 1 5 5 C 1.52993 * 109.47255 * 269.99988 * 3 2 1 6 6 C 1.50705 * 109.47161 * 64.99530 * 5 3 2 7 7 C 1.38231 * 120.00274 * 269.72564 * 6 5 3 8 8 C 1.38240 * 119.99958 * 179.74232 * 7 6 5 9 9 C 1.38237 * 119.99686 * 0.53679 * 8 7 6 10 10 C 1.38228 * 120.00070 * 359.73777 * 9 8 7 11 11 C 1.38237 * 119.99528 * 90.00476 * 6 5 3 12 12 C 1.50700 * 109.47138 * 149.99712 * 3 2 1 13 13 O 1.21283 * 119.99803 * 5.00047 * 12 3 2 14 14 N 1.34777 * 119.99675 * 185.27922 * 12 3 2 15 15 C 1.47423 * 125.64829 * 359.41380 * 14 12 3 16 16 C 1.55137 * 104.71983 * 155.82193 * 15 14 12 17 17 C 1.55161 * 101.48526 * 37.29517 * 16 15 14 18 18 H 1.09000 * 110.87256 * 82.76436 * 17 16 15 19 19 N 1.46499 * 110.71602 * 205.97085 * 17 16 15 20 20 C 1.36933 * 119.99883 * 268.51730 * 19 17 16 21 21 H 1.08003 * 120.00020 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99873 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00209 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99846 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47539 * 60.00049 * 24 22 20 26 26 H 1.48504 * 109.46956 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46900 * 299.99704 * 24 22 20 28 28 C 1.47019 * 125.64379 * 179.72980 * 14 12 3 29 29 H 1.09001 * 109.46913 * 60.00456 * 1 2 3 30 30 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47617 * 300.00145 * 1 2 3 32 32 H 1.08998 * 109.47656 * 184.99657 * 5 3 2 33 33 H 1.09004 * 109.47256 * 304.99950 * 5 3 2 34 34 H 1.08001 * 120.00072 * 0.02562 * 7 6 5 35 35 H 1.07997 * 119.99705 * 180.30012 * 8 7 6 36 36 H 1.07997 * 119.99673 * 179.76686 * 9 8 7 37 37 H 1.08001 * 120.00133 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.00003 * 359.97438 * 11 6 5 39 39 H 1.09007 * 110.36652 * 274.74673 * 15 14 12 40 40 H 1.08993 * 110.36828 * 37.07553 * 15 14 12 41 41 H 1.08994 * 111.19025 * 279.18980 * 16 15 14 42 42 H 1.08997 * 110.93557 * 155.28921 * 16 15 14 43 43 H 0.97001 * 120.00068 * 88.52703 * 19 17 16 44 44 H 0.97001 * 119.99788 * 179.97438 * 23 22 20 45 45 H 1.09003 * 109.88210 * 300.43359 * 28 14 12 46 46 H 1.08996 * 109.88947 * 61.60157 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4424 6 6 0.8791 1.9309 -2.1163 7 6 0.3140 0.8654 -2.7918 8 6 -0.9163 1.0102 -3.4053 9 6 -1.5763 2.2237 -3.3527 10 6 -1.0086 3.2907 -2.6820 11 6 0.2191 3.1444 -2.0636 12 6 3.3386 1.2640 0.7105 13 8 3.7896 0.2045 1.0915 14 7 4.0226 2.4048 0.9274 15 6 3.5962 3.7541 0.5142 16 6 4.3303 4.7146 1.4865 17 6 5.7004 4.0042 1.6467 18 1 6.3662 4.2537 0.8205 19 7 6.3169 4.3508 2.9297 20 6 7.1683 5.4201 3.0135 21 1 7.3849 6.0081 2.1338 22 6 7.7529 5.7482 4.2290 23 7 7.4893 5.0313 5.3009 24 14 8.9137 7.2073 4.3434 25 1 8.1949 8.4442 3.9456 26 1 9.4003 7.3443 5.7397 27 1 10.0694 6.9927 3.4358 28 6 5.3208 2.5088 1.6096 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.7412 2.7274 -1.4438 33 1 2.8099 1.0320 -1.9815 34 1 0.8316 -0.0814 -2.8364 35 1 -1.3599 0.1763 -3.9290 36 1 -2.5357 2.3379 -3.8353 37 1 -1.5244 4.2387 -2.6406 38 1 0.6625 3.9779 -1.5393 39 1 3.8981 3.9488 -0.5150 40 1 2.5166 3.8599 0.6202 41 1 3.8104 4.7808 2.4422 42 1 4.4518 5.7019 1.0409 43 1 6.1222 3.8228 3.7198 44 1 7.8981 5.2604 6.1501 45 1 5.2378 2.1221 2.6254 46 1 6.0756 1.9484 1.0580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970757356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:45 Heat of formation + Delta-G solvation = -30.223672 kcal Electronic energy + Delta-G solvation = -26766.147038 eV Core-core repulsion = 23042.490810 eV Total energy + Delta-G solvation = -3723.656228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54832 -39.46051 -37.93538 -36.87080 -34.29868 -33.43899 -31.58136 -31.25856 -29.96989 -29.51721 -27.65868 -26.47782 -24.91794 -23.43373 -22.92304 -22.63811 -21.30485 -20.18673 -19.35764 -17.45976 -17.42873 -17.11277 -16.60732 -16.00196 -15.70413 -15.40313 -15.21330 -15.13161 -14.56105 -14.09037 -13.74854 -13.62313 -13.53211 -13.45111 -13.30192 -13.00982 -12.77357 -12.56454 -12.40107 -12.09867 -11.79279 -11.67750 -11.42323 -11.37584 -11.24976 -11.08770 -10.84987 -10.73533 -10.37542 -10.20528 -10.14288 -9.79118 -9.58906 -9.20031 -8.99664 -8.75588 -8.44221 -7.07974 -5.84465 -3.15528 0.99365 1.07614 2.69506 2.79448 3.39624 3.44247 3.45366 3.45584 3.82469 4.26634 4.52032 4.53227 4.65576 4.72156 4.73981 4.81574 4.85479 4.94585 5.07948 5.19149 5.20209 5.22150 5.28264 5.31967 5.38726 5.49796 5.52587 5.54697 5.59539 5.72757 5.73925 5.79195 5.91400 6.10024 6.14760 6.20407 6.22271 6.29857 6.32892 6.49724 6.56107 6.67516 6.85166 6.91353 7.61829 7.65968 8.29159 8.32991 9.44120 9.98140 10.32677 11.37545 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.002636 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.144475 B =10619.795309 C =11410.021954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.354 6.354 3 C 0.086 3.914 4 H 0.085 0.915 5 C -0.105 4.105 6 C -0.083 4.083 7 C -0.105 4.105 8 C -0.124 4.124 9 C -0.123 4.123 10 C -0.119 4.119 11 C -0.117 4.117 12 C 0.526 3.474 13 O -0.522 6.522 14 N -0.611 5.611 15 C 0.094 3.906 16 C -0.155 4.155 17 C 0.172 3.828 18 H 0.068 0.932 19 N -0.715 5.715 20 C -0.247 4.247 21 H 0.072 0.928 22 C -0.009 4.009 23 N -0.930 5.930 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.101 3.899 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.386 0.614 44 H 0.258 0.742 45 H 0.071 0.929 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.429 -4.790 -17.938 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.272 6.272 3 C 0.025 3.975 4 H 0.103 0.897 5 C -0.143 4.143 6 C -0.083 4.083 7 C -0.123 4.123 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.137 4.137 11 C -0.135 4.135 12 C 0.313 3.687 13 O -0.397 6.397 14 N -0.347 5.347 15 C -0.029 4.029 16 C -0.196 4.196 17 C 0.060 3.940 18 H 0.086 0.914 19 N -0.355 5.355 20 C -0.378 4.378 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.211 1.211 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.221 0.779 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.968 -5.483 -17.716 26.527 hybrid contribution 0.228 0.943 0.392 1.047 sum -18.740 -4.539 -17.323 25.921 Atomic orbital electron populations 1.23250 0.80874 1.03169 1.01030 1.88019 1.19547 1.24787 1.94831 1.21809 0.93702 0.86987 0.95043 0.89708 1.21193 0.94936 1.03741 0.94406 1.19795 0.96211 0.93936 0.98371 1.21115 0.95679 0.98707 0.96799 1.21170 0.95345 0.97710 0.99940 1.21173 1.00001 0.93332 0.99591 1.21156 0.95686 0.98956 0.97927 1.21126 0.95406 0.97045 0.99882 1.19894 0.85689 0.83010 0.80154 1.90724 1.69059 1.29165 1.50785 1.48414 1.22260 1.06348 1.57630 1.22561 0.99196 0.82206 0.98936 1.23625 0.99145 0.98116 0.98738 1.21186 0.92132 0.89366 0.91278 0.91429 1.42365 1.53346 1.34978 1.04818 1.19172 1.19060 1.04874 0.94690 0.90979 1.24784 1.00680 0.99435 0.95712 1.69657 1.47398 1.40997 0.99639 0.86243 0.80804 0.82232 0.76709 1.21177 1.21656 1.21148 1.22381 0.83094 0.99216 0.97559 0.92144 0.89502 0.94245 0.88817 0.89315 0.85628 0.86016 0.86182 0.85970 0.85776 0.91308 0.91454 0.90553 0.90440 0.77908 0.93260 0.91022 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.24 101.05 1.03 1.16 16 2 O -0.35 -4.80 9.75 -55.09 -0.54 -5.34 16 3 C 0.09 1.06 2.08 -27.89 -0.06 1.00 16 4 H 0.09 0.92 7.26 -51.92 -0.38 0.54 16 5 C -0.11 -1.04 4.95 -27.88 -0.14 -1.18 16 6 C -0.08 -0.74 3.87 -104.62 -0.41 -1.14 16 7 C -0.11 -0.89 6.83 -39.58 -0.27 -1.16 16 8 C -0.12 -0.90 9.94 -39.58 -0.39 -1.29 16 9 C -0.12 -0.86 10.05 -39.59 -0.40 -1.25 16 10 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 11 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 12 C 0.53 8.51 7.24 -10.98 -0.08 8.43 16 13 O -0.52 -10.76 16.83 -14.31 -0.24 -11.01 16 14 N -0.61 -9.25 3.32 -170.38 -0.57 -9.82 16 15 C 0.09 1.13 5.36 -2.41 -0.01 1.12 16 16 C -0.15 -2.37 6.78 -24.46 -0.17 -2.53 16 17 C 0.17 3.19 3.61 -66.09 -0.24 2.95 16 18 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 19 N -0.71 -17.13 5.22 -51.65 -0.27 -17.40 16 20 C -0.25 -6.55 9.96 -15.06 -0.15 -6.70 16 21 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 24 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.10 1.77 6.62 -3.06 -0.02 1.75 16 29 H 0.06 0.54 3.85 -51.93 -0.20 0.34 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.09 0.83 5.42 -51.93 -0.28 0.55 16 33 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.07 0.69 7.12 -51.92 -0.37 0.32 16 40 H 0.07 0.66 7.32 -51.93 -0.38 0.28 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.39 10.03 7.56 -40.82 -0.31 9.72 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.07 1.41 7.72 -51.93 -0.40 1.01 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -32.76 371.34 -9.42 -42.18 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.93 Total: 7.64 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.17 Total: -1.77 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.11 Total: -54.00 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.78 Total: -16.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.76 -9.42 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970757356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.958 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds