Wall clock time and date at job start Fri Apr 10 2020 18:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99944 * 2 1 4 4 H 1.09007 * 109.46998 * 29.99877 * 3 2 1 5 5 C 1.52993 * 109.47255 * 269.99988 * 3 2 1 6 6 C 1.50705 * 109.47161 * 64.99530 * 5 3 2 7 7 C 1.38231 * 120.00274 * 269.72564 * 6 5 3 8 8 C 1.38240 * 119.99958 * 179.74232 * 7 6 5 9 9 C 1.38237 * 119.99686 * 0.53679 * 8 7 6 10 10 C 1.38228 * 120.00070 * 359.73777 * 9 8 7 11 11 C 1.38237 * 119.99528 * 90.00476 * 6 5 3 12 12 C 1.50700 * 109.47138 * 149.99712 * 3 2 1 13 13 O 1.21283 * 119.99803 * 5.00047 * 12 3 2 14 14 N 1.34777 * 119.99675 * 185.27922 * 12 3 2 15 15 C 1.47423 * 125.64829 * 359.41380 * 14 12 3 16 16 C 1.55137 * 104.71983 * 155.82193 * 15 14 12 17 17 C 1.55161 * 101.48526 * 37.29517 * 16 15 14 18 18 H 1.09000 * 110.87256 * 82.76436 * 17 16 15 19 19 N 1.46499 * 110.71602 * 205.97085 * 17 16 15 20 20 C 1.36933 * 119.99883 * 268.51730 * 19 17 16 21 21 H 1.08003 * 120.00020 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99873 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00209 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99846 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47539 * 60.00049 * 24 22 20 26 26 H 1.48504 * 109.46956 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46900 * 299.99704 * 24 22 20 28 28 C 1.47019 * 125.64379 * 179.72980 * 14 12 3 29 29 H 1.09001 * 109.46913 * 60.00456 * 1 2 3 30 30 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47617 * 300.00145 * 1 2 3 32 32 H 1.08998 * 109.47656 * 184.99657 * 5 3 2 33 33 H 1.09004 * 109.47256 * 304.99950 * 5 3 2 34 34 H 1.08001 * 120.00072 * 0.02562 * 7 6 5 35 35 H 1.07997 * 119.99705 * 180.30012 * 8 7 6 36 36 H 1.07997 * 119.99673 * 179.76686 * 9 8 7 37 37 H 1.08001 * 120.00133 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.00003 * 359.97438 * 11 6 5 39 39 H 1.09007 * 110.36652 * 274.74673 * 15 14 12 40 40 H 1.08993 * 110.36828 * 37.07553 * 15 14 12 41 41 H 1.08994 * 111.19025 * 279.18980 * 16 15 14 42 42 H 1.08997 * 110.93557 * 155.28921 * 16 15 14 43 43 H 0.97001 * 120.00068 * 88.52703 * 19 17 16 44 44 H 0.97001 * 119.99788 * 179.97438 * 23 22 20 45 45 H 1.09003 * 109.88210 * 300.43359 * 28 14 12 46 46 H 1.08996 * 109.88947 * 61.60157 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4424 6 6 0.8791 1.9309 -2.1163 7 6 0.3140 0.8654 -2.7918 8 6 -0.9163 1.0102 -3.4053 9 6 -1.5763 2.2237 -3.3527 10 6 -1.0086 3.2907 -2.6820 11 6 0.2191 3.1444 -2.0636 12 6 3.3386 1.2640 0.7105 13 8 3.7896 0.2045 1.0915 14 7 4.0226 2.4048 0.9274 15 6 3.5962 3.7541 0.5142 16 6 4.3303 4.7146 1.4865 17 6 5.7004 4.0042 1.6467 18 1 6.3662 4.2537 0.8205 19 7 6.3169 4.3508 2.9297 20 6 7.1683 5.4201 3.0135 21 1 7.3849 6.0081 2.1338 22 6 7.7529 5.7482 4.2290 23 7 7.4893 5.0313 5.3009 24 14 8.9137 7.2073 4.3434 25 1 8.1949 8.4442 3.9456 26 1 9.4003 7.3443 5.7397 27 1 10.0694 6.9927 3.4358 28 6 5.3208 2.5088 1.6096 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.7412 2.7274 -1.4438 33 1 2.8099 1.0320 -1.9815 34 1 0.8316 -0.0814 -2.8364 35 1 -1.3599 0.1763 -3.9290 36 1 -2.5357 2.3379 -3.8353 37 1 -1.5244 4.2387 -2.6406 38 1 0.6625 3.9779 -1.5393 39 1 3.8981 3.9488 -0.5150 40 1 2.5166 3.8599 0.6202 41 1 3.8104 4.7808 2.4422 42 1 4.4518 5.7019 1.0409 43 1 6.1222 3.8228 3.7198 44 1 7.8981 5.2604 6.1501 45 1 5.2378 2.1221 2.6254 46 1 6.0756 1.9484 1.0580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970757356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:44 Heat of formation + Delta-G solvation = -50.279760 kcal Electronic energy + Delta-G solvation = -26767.016735 eV Core-core repulsion = 23042.490810 eV Total energy + Delta-G solvation = -3724.525925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58283 -40.31676 -39.02621 -38.09680 -35.98740 -34.35164 -33.21481 -31.80119 -31.20175 -30.65640 -29.08027 -27.24615 -26.16165 -25.11288 -23.81162 -23.41428 -21.94990 -21.64718 -20.57232 -19.35070 -18.52213 -17.78973 -17.67371 -17.08579 -16.88405 -16.40541 -16.33575 -15.85932 -15.78879 -15.46687 -15.26042 -14.89374 -14.55361 -14.29976 -14.23253 -13.96420 -13.72349 -13.61722 -13.50787 -13.26069 -13.05712 -12.97375 -12.81331 -12.61911 -12.37574 -12.18478 -12.11514 -11.97184 -11.77570 -11.73208 -11.64889 -11.12820 -10.92089 -10.73378 -9.76355 -9.73553 -9.39838 -9.04234 -7.93893 -5.24418 0.42676 0.54266 1.46159 1.49905 1.53091 1.58718 1.63839 2.57500 2.87855 2.89286 3.31056 3.40485 3.70888 3.75226 3.85994 3.93084 3.96236 4.05508 4.10330 4.22239 4.27959 4.34604 4.36755 4.44077 4.47821 4.52567 4.56666 4.61146 4.69333 4.79167 4.84007 4.86792 4.89926 4.99381 5.14414 5.17753 5.22530 5.26206 5.44843 5.54681 5.62473 5.68932 5.72382 6.02424 6.15283 6.26246 6.45062 7.03326 7.32637 8.04667 8.28003 9.29489 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.002636 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.144475 B =10619.795309 C =11410.021954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.384 6.384 3 C 0.095 3.905 4 H 0.106 0.894 5 C -0.095 4.095 6 C -0.095 4.095 7 C -0.117 4.117 8 C -0.129 4.129 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.121 4.121 12 C 0.520 3.480 13 O -0.578 6.578 14 N -0.607 5.607 15 C 0.099 3.901 16 C -0.144 4.144 17 C 0.166 3.834 18 H 0.076 0.924 19 N -0.731 5.731 20 C -0.239 4.239 21 H 0.086 0.914 22 C -0.077 4.077 23 N -0.972 5.972 24 Si 0.975 3.025 25 H -0.273 1.273 26 H -0.301 1.301 27 H -0.278 1.278 28 C 0.108 3.892 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.042 0.958 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.473 -2.874 -20.534 29.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.303 6.303 3 C 0.034 3.966 4 H 0.123 0.877 5 C -0.133 4.133 6 C -0.095 4.095 7 C -0.135 4.135 8 C -0.147 4.147 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.139 4.139 12 C 0.309 3.691 13 O -0.457 6.457 14 N -0.342 5.342 15 C -0.022 4.022 16 C -0.185 4.185 17 C 0.057 3.943 18 H 0.094 0.906 19 N -0.371 5.371 20 C -0.370 4.370 21 H 0.104 0.896 22 C -0.269 4.269 23 N -0.623 5.623 24 Si 0.804 3.196 25 H -0.199 1.199 26 H -0.228 1.228 27 H -0.204 1.204 28 C -0.016 4.016 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.054 -3.531 -20.395 29.524 hybrid contribution 0.781 0.280 1.108 1.384 sum -20.273 -3.251 -19.287 28.170 Atomic orbital electron populations 1.23407 0.79074 1.04157 1.01837 1.87984 1.21541 1.25711 1.95034 1.21817 0.91363 0.87182 0.96243 0.87656 1.21090 0.95851 1.03842 0.92486 1.19708 0.95847 0.94680 0.99224 1.21170 0.96334 0.98550 0.97482 1.21385 0.94954 0.98582 0.99730 1.21485 1.00688 0.93017 0.99135 1.21452 0.95549 0.99843 0.97415 1.21343 0.95654 0.96988 0.99917 1.20750 0.86768 0.82198 0.79415 1.90692 1.70631 1.31226 1.53161 1.48455 1.21128 1.07698 1.56878 1.22798 1.00926 0.79026 0.99481 1.23419 0.96667 0.99402 0.99033 1.21404 0.93766 0.90095 0.89067 0.90591 1.42561 1.53790 1.34493 1.06222 1.19623 1.17896 1.04721 0.94803 0.89635 1.25615 1.03133 1.02494 0.95693 1.69833 1.49329 1.43165 0.99961 0.85189 0.78954 0.79470 0.75985 1.19907 1.22789 1.20396 1.22079 0.84695 0.98561 0.96307 0.90905 0.88613 0.93732 0.87324 0.90637 0.86361 0.84584 0.84260 0.84112 0.84168 0.87972 0.88013 0.92445 0.88700 0.79708 0.94111 0.93944 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.24 113.37 1.16 1.36 16 2 O -0.38 -10.20 9.75 -129.99 -1.27 -11.46 16 3 C 0.10 2.20 2.08 29.85 0.06 2.26 16 4 H 0.11 1.97 7.26 -2.38 -0.02 1.96 16 5 C -0.10 -1.68 4.95 29.85 0.15 -1.53 16 6 C -0.09 -1.44 3.87 -19.86 -0.08 -1.51 16 7 C -0.12 -1.78 6.83 22.27 0.15 -1.63 16 8 C -0.13 -1.56 9.94 22.27 0.22 -1.34 16 9 C -0.13 -1.34 10.05 22.27 0.22 -1.12 16 10 C -0.12 -1.35 10.05 22.27 0.22 -1.13 16 11 C -0.12 -1.49 9.70 22.27 0.22 -1.28 16 12 C 0.52 16.66 7.24 87.66 0.63 17.30 16 13 O -0.58 -24.65 16.83 15.95 0.27 -24.39 16 14 N -0.61 -17.76 3.32 -811.34 -2.70 -20.45 16 15 C 0.10 2.03 5.36 86.94 0.47 2.50 16 16 C -0.14 -4.09 6.78 32.07 0.22 -3.87 16 17 C 0.17 6.05 3.61 46.18 0.17 6.21 16 18 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 19 N -0.73 -35.53 5.22 -317.32 -1.66 -37.19 16 20 C -0.24 -12.61 9.96 84.03 0.84 -11.77 16 21 H 0.09 4.20 7.83 -2.91 -0.02 4.17 16 22 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 23 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 24 Si 0.98 44.87 29.55 68.60 2.03 46.90 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 C 0.11 3.86 6.62 86.73 0.57 4.44 16 29 H 0.07 1.15 3.85 -2.39 -0.01 1.14 16 30 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 0.76 8.08 -2.39 -0.02 0.74 16 32 H 0.11 1.52 5.42 -2.39 -0.01 1.51 16 33 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 34 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.10 1.54 7.12 -2.38 -0.02 1.52 16 40 H 0.10 1.49 7.32 -2.39 -0.02 1.48 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.37 20.06 7.56 -92.71 -0.70 19.36 16 44 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.04 1.77 7.72 -2.39 -0.02 1.75 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -73.91 371.34 2.93 -70.98 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.28 Total: 29.52 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.69 Total: 5.03 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -4.07 Total: -116.57 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.00 Total: -35.85 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.91 2.93 -70.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970757356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.698 kcal (2) G-P(sol) polarization free energy of solvation -73.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds