Wall clock time and date at job start Fri Apr 10 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.99965 * 2 1 4 4 C 1.38206 * 120.00084 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00089 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99871 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47472 * 89.99868 * 6 5 4 8 8 O 1.21276 * 119.99682 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99993 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.63926 * 31.86042 * 10 9 7 12 12 C 1.54315 * 110.71985 * 268.52513 * 10 9 7 13 13 N 1.47023 * 107.27241 * 219.44430 * 12 10 9 14 14 C 1.36938 * 125.65186 * 178.96689 * 13 12 10 15 15 H 1.07999 * 119.99952 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00074 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99665 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00169 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47368 * 59.99572 * 18 16 14 20 20 H 1.48500 * 109.47339 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47130 * 300.00108 * 18 16 14 22 22 C 1.47426 * 108.69981 * 358.93706 * 13 12 10 23 23 C 1.54907 * 104.82942 * 24.13288 * 22 13 12 24 24 H 1.09005 * 111.04094 * 81.08152 * 23 22 13 25 25 O 1.42903 * 111.00431 * 204.90944 * 23 22 13 26 26 C 1.38213 * 119.99835 * 0.24813 * 5 4 3 27 27 C 1.38210 * 120.00096 * 179.97438 * 2 1 3 28 28 C 1.50697 * 119.99840 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47100 * 89.99790 * 1 2 3 30 30 H 1.08996 * 109.46891 * 210.00117 * 1 2 3 31 31 H 1.09000 * 109.46665 * 329.99883 * 1 2 3 32 32 H 1.08006 * 119.99669 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.00113 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47178 * 329.99055 * 6 5 4 35 35 H 1.09005 * 109.46806 * 209.99674 * 6 5 4 36 36 H 0.96999 * 120.00093 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.88697 * 338.85905 * 12 10 9 38 38 H 1.08998 * 109.88724 * 99.87186 * 12 10 9 39 39 H 0.97001 * 120.00180 * 180.02562 * 17 16 14 40 40 H 1.08994 * 110.37345 * 265.29076 * 22 13 12 41 41 H 1.09007 * 110.36591 * 142.96519 * 22 13 12 42 42 H 0.96700 * 114.00311 * 292.19952 * 25 23 22 43 43 H 1.07997 * 119.99832 * 179.73088 * 26 5 4 44 44 H 1.08997 * 109.47043 * 90.00766 * 28 27 2 45 45 H 1.09003 * 109.47150 * 210.00110 * 28 27 2 46 46 H 1.09004 * 109.47487 * 330.00076 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 6 6.2823 -0.0004 1.4176 8 8 5.4949 -0.0004 2.3400 9 7 7.6075 -0.0009 1.6628 10 6 8.0970 -0.0009 3.0437 11 1 7.4085 -0.5390 3.6954 12 6 8.3151 1.4419 3.5456 13 7 9.5465 1.4433 4.3488 14 6 10.1006 2.5371 4.9584 15 1 9.6268 3.5034 4.8683 16 6 11.2714 2.4040 5.6922 17 7 11.8485 1.2263 5.8025 18 14 12.0277 3.8962 6.5232 19 1 11.0589 4.4666 7.4935 20 1 13.2647 3.4910 7.2379 21 1 12.3610 4.9177 5.4981 22 6 10.0855 0.0717 4.3899 23 6 9.5197 -0.6148 3.1217 24 1 10.1066 -0.3543 2.2409 25 8 9.4574 -2.0324 3.2912 26 6 3.5807 -1.1969 -0.0073 27 6 2.1981 -1.1969 0.0005 28 6 1.4446 -2.5020 0.0017 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1327 -0.0004 33 1 4.1204 2.1327 -0.0010 34 1 6.1416 0.8903 -0.5166 35 1 6.1417 -0.8896 -0.5173 36 1 8.2372 -0.0006 0.9250 37 1 8.4254 2.1170 2.6970 38 1 7.4694 1.7529 4.1590 39 1 12.6665 1.1331 6.3156 40 1 9.7416 -0.4445 5.2861 41 1 11.1749 0.0911 4.3567 42 1 10.3228 -2.4605 3.3452 43 1 4.1207 -2.1321 -0.0126 44 1 1.2627 -2.8174 -1.0257 45 1 2.0339 -3.2613 0.5158 46 1 0.4923 -2.3714 0.5158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078140097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:24 Heat of formation + Delta-G solvation = -41.182401 kcal Electronic energy + Delta-G solvation = -26236.129984 eV Core-core repulsion = 22511.998550 eV Total energy + Delta-G solvation = -3724.131434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15349 -39.22039 -37.74902 -35.08922 -34.29626 -33.96505 -32.34866 -31.76097 -29.97314 -28.33162 -27.39907 -26.91637 -25.35512 -24.23879 -22.20016 -21.12107 -20.61846 -20.01288 -19.74506 -17.30510 -17.03919 -16.53480 -16.15707 -16.02108 -15.51765 -14.96735 -14.72119 -14.57738 -14.41342 -13.92767 -13.73662 -13.28061 -13.21899 -12.99598 -12.92579 -12.90775 -12.77956 -12.37646 -12.10067 -12.01997 -11.76117 -11.71524 -11.50662 -11.26057 -11.05033 -11.00313 -10.94415 -10.82993 -10.22992 -9.93411 -9.79527 -9.70693 -9.28549 -8.76612 -8.73573 -8.72736 -8.46383 -6.93338 -5.73241 -3.15793 1.26056 1.37330 2.85437 3.30903 3.37712 3.41790 3.43236 3.77893 4.39785 4.54662 4.61583 4.65420 4.77126 4.91284 4.95819 5.04380 5.14247 5.27816 5.31182 5.33332 5.39745 5.40935 5.47272 5.50131 5.62839 5.63728 5.66404 5.67245 5.73654 5.86832 6.06210 6.08783 6.11951 6.19839 6.38540 6.49694 6.54101 6.58775 6.66733 6.93845 6.98566 7.30985 7.51140 7.67891 7.76300 8.09344 8.24460 8.46820 9.12740 9.73218 10.35827 11.30948 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.002526 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.817308 B =11083.927743 C =11841.162694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.092 4.092 3 C -0.116 4.116 4 C -0.106 4.106 5 C -0.063 4.063 6 C -0.103 4.103 7 C 0.513 3.487 8 O -0.531 6.531 9 N -0.717 5.717 10 C 0.142 3.858 11 H 0.101 0.899 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.223 4.223 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.918 3.082 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.130 3.870 23 C 0.067 3.933 24 H 0.061 0.939 25 O -0.566 6.566 26 C -0.101 4.101 27 C -0.088 4.088 28 C -0.116 4.116 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.398 0.602 37 H 0.030 0.970 38 H 0.032 0.968 39 H 0.254 0.746 40 H 0.025 0.975 41 H 0.113 0.887 42 H 0.377 0.623 43 H 0.119 0.881 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.283 -5.976 -16.514 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.063 4.063 6 C -0.143 4.143 7 C 0.298 3.702 8 O -0.407 6.407 9 N -0.368 5.368 10 C 0.037 3.963 11 H 0.119 0.881 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.351 4.351 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.573 5.573 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.004 3.996 23 C 0.006 3.994 24 H 0.079 0.921 25 O -0.371 6.371 26 C -0.119 4.119 27 C -0.088 4.088 28 C -0.172 4.172 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.231 0.769 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.130 0.870 42 H 0.224 0.776 43 H 0.137 0.863 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.327 -5.809 -15.712 23.392 hybrid contribution 1.435 0.753 0.208 1.634 sum -14.892 -5.056 -15.504 22.084 Atomic orbital electron populations 1.20837 0.91535 1.02784 1.02039 1.19719 0.95802 0.92737 1.00907 1.20934 0.94058 0.97342 1.01090 1.20945 0.94215 0.97399 0.99835 1.19231 0.93593 0.93506 1.00007 1.20685 0.93254 1.05122 0.95199 1.20458 0.82367 0.76299 0.91032 1.90732 1.55191 1.48636 1.46111 1.45992 1.06754 1.75220 1.08820 1.21995 0.94998 0.96997 0.82334 0.88134 1.21615 0.90607 0.92859 0.94607 1.44285 1.23812 1.05329 1.59356 1.19062 1.04529 0.87143 1.24390 0.90262 1.24804 0.98086 0.97258 1.00474 1.69727 1.20949 1.21243 1.45416 0.86093 0.78448 0.81433 0.79178 1.21090 1.21504 1.21089 1.22546 1.02015 0.83727 0.91335 1.23649 0.95148 0.80451 1.00119 0.92095 1.86418 1.34203 1.19880 1.96554 1.20821 0.93468 0.97393 1.00264 1.19669 0.93551 0.94836 1.00759 1.20839 1.00126 0.94209 1.02054 0.91392 0.91264 0.91731 0.86206 0.86218 0.87998 0.88114 0.76858 0.95234 0.94973 0.93534 0.95689 0.86985 0.77639 0.86313 0.91362 0.91619 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.61 36.01 0.35 -0.57 16 2 C -0.09 -1.00 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 4 C -0.11 -1.28 9.70 -39.59 -0.38 -1.67 16 5 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 6 C -0.10 -1.11 5.83 -29.03 -0.17 -1.28 16 7 C 0.51 7.88 7.82 -10.99 -0.09 7.79 16 8 O -0.53 -10.57 15.68 5.56 0.09 -10.48 16 9 N -0.72 -10.77 5.10 -52.04 -0.27 -11.04 16 10 C 0.14 2.71 3.05 -66.10 -0.20 2.51 16 11 H 0.10 2.18 7.55 -51.93 -0.39 1.79 16 12 C 0.13 2.86 6.99 -3.07 -0.02 2.84 16 13 N -0.60 -15.42 3.39 -170.08 -0.58 -16.00 16 14 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 18 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.13 3.10 5.62 -2.53 -0.01 3.08 16 23 C 0.07 1.25 4.06 -24.59 -0.10 1.15 16 24 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 25 O -0.57 -9.76 13.47 -35.23 -0.47 -10.23 16 26 C -0.10 -1.22 9.36 -39.58 -0.37 -1.59 16 27 C -0.09 -0.99 5.88 -104.63 -0.62 -1.60 16 28 C -0.12 -0.97 9.60 36.00 0.35 -0.63 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.49 5.95 -51.93 -0.31 0.19 16 31 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.40 4.71 8.56 -40.82 -0.35 4.36 16 37 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 2.91 5.88 -51.92 -0.31 2.61 16 42 H 0.38 4.91 9.12 45.56 0.42 5.33 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.07 0.51 5.95 -51.93 -0.31 0.21 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -34.31 376.11 -9.27 -43.58 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.27 Total: 8.76 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.98 Total: -1.26 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.28 Total: -52.89 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.39 Total: -20.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.31 -9.27 -43.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078140097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.400 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds