Wall clock time and date at job start Fri Apr 10 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.99965 * 2 1 4 4 C 1.38206 * 120.00084 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00089 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99871 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47472 * 89.99868 * 6 5 4 8 8 O 1.21276 * 119.99682 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99993 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.63926 * 31.86042 * 10 9 7 12 12 C 1.54315 * 110.71985 * 268.52513 * 10 9 7 13 13 N 1.47023 * 107.27241 * 219.44430 * 12 10 9 14 14 C 1.36938 * 125.65186 * 178.96689 * 13 12 10 15 15 H 1.07999 * 119.99952 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00074 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99665 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00169 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47368 * 59.99572 * 18 16 14 20 20 H 1.48500 * 109.47339 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47130 * 300.00108 * 18 16 14 22 22 C 1.47426 * 108.69981 * 358.93706 * 13 12 10 23 23 C 1.54907 * 104.82942 * 24.13288 * 22 13 12 24 24 H 1.09005 * 111.04094 * 81.08152 * 23 22 13 25 25 O 1.42903 * 111.00431 * 204.90944 * 23 22 13 26 26 C 1.38213 * 119.99835 * 0.24813 * 5 4 3 27 27 C 1.38210 * 120.00096 * 179.97438 * 2 1 3 28 28 C 1.50697 * 119.99840 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47100 * 89.99790 * 1 2 3 30 30 H 1.08996 * 109.46891 * 210.00117 * 1 2 3 31 31 H 1.09000 * 109.46665 * 329.99883 * 1 2 3 32 32 H 1.08006 * 119.99669 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.00113 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47178 * 329.99055 * 6 5 4 35 35 H 1.09005 * 109.46806 * 209.99674 * 6 5 4 36 36 H 0.96999 * 120.00093 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.88697 * 338.85905 * 12 10 9 38 38 H 1.08998 * 109.88724 * 99.87186 * 12 10 9 39 39 H 0.97001 * 120.00180 * 180.02562 * 17 16 14 40 40 H 1.08994 * 110.37345 * 265.29076 * 22 13 12 41 41 H 1.09007 * 110.36591 * 142.96519 * 22 13 12 42 42 H 0.96700 * 114.00311 * 292.19952 * 25 23 22 43 43 H 1.07997 * 119.99832 * 179.73088 * 26 5 4 44 44 H 1.08997 * 109.47043 * 90.00766 * 28 27 2 45 45 H 1.09003 * 109.47150 * 210.00110 * 28 27 2 46 46 H 1.09004 * 109.47487 * 330.00076 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 6 6.2823 -0.0004 1.4176 8 8 5.4949 -0.0004 2.3400 9 7 7.6075 -0.0009 1.6628 10 6 8.0970 -0.0009 3.0437 11 1 7.4085 -0.5390 3.6954 12 6 8.3151 1.4419 3.5456 13 7 9.5465 1.4433 4.3488 14 6 10.1006 2.5371 4.9584 15 1 9.6268 3.5034 4.8683 16 6 11.2714 2.4040 5.6922 17 7 11.8485 1.2263 5.8025 18 14 12.0277 3.8962 6.5232 19 1 11.0589 4.4666 7.4935 20 1 13.2647 3.4910 7.2379 21 1 12.3610 4.9177 5.4981 22 6 10.0855 0.0717 4.3899 23 6 9.5197 -0.6148 3.1217 24 1 10.1066 -0.3543 2.2409 25 8 9.4574 -2.0324 3.2912 26 6 3.5807 -1.1969 -0.0073 27 6 2.1981 -1.1969 0.0005 28 6 1.4446 -2.5020 0.0017 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1327 -0.0004 33 1 4.1204 2.1327 -0.0010 34 1 6.1416 0.8903 -0.5166 35 1 6.1417 -0.8896 -0.5173 36 1 8.2372 -0.0006 0.9250 37 1 8.4254 2.1170 2.6970 38 1 7.4694 1.7529 4.1590 39 1 12.6665 1.1331 6.3156 40 1 9.7416 -0.4445 5.2861 41 1 11.1749 0.0911 4.3567 42 1 10.3228 -2.4605 3.3452 43 1 4.1207 -2.1321 -0.0126 44 1 1.2627 -2.8174 -1.0257 45 1 2.0339 -3.2613 0.5158 46 1 0.4923 -2.3714 0.5158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078140097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:24 Heat of formation + Delta-G solvation = -65.359874 kcal Electronic energy + Delta-G solvation = -26237.178398 eV Core-core repulsion = 22511.998550 eV Total energy + Delta-G solvation = -3725.179848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26844 -40.33477 -39.25994 -36.70195 -35.57399 -35.09095 -33.65197 -33.10544 -31.04398 -29.95684 -28.71904 -28.03595 -26.61545 -25.75644 -23.02234 -22.59478 -22.15939 -21.54122 -20.74049 -19.11308 -18.52274 -17.90674 -17.37770 -16.93797 -16.88091 -16.38428 -15.95681 -15.68603 -15.58812 -15.24575 -15.09791 -14.82518 -14.57996 -14.08456 -13.98028 -13.83688 -13.62367 -13.57890 -13.55934 -13.22697 -13.12847 -12.91523 -12.72764 -12.70841 -12.62853 -12.50222 -12.11287 -11.94050 -11.82644 -11.70507 -11.44356 -11.18924 -10.82800 -10.76649 -10.15273 -9.60559 -9.29035 -8.99260 -7.83328 -5.30007 0.41243 0.52735 1.46406 1.49690 1.56024 1.65587 2.11783 2.46349 2.87326 3.07472 3.28077 3.62453 3.68774 3.80002 3.89839 4.00538 4.04007 4.10886 4.15130 4.21838 4.27927 4.41853 4.43235 4.56109 4.59858 4.63646 4.73655 4.75141 4.82239 4.87424 4.89396 4.95717 5.05181 5.05835 5.29154 5.35912 5.40829 5.42218 5.47254 5.56480 5.66229 5.69287 5.78353 6.18573 6.19525 6.57701 6.86073 7.03176 7.28830 7.67289 8.29686 9.18243 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.002526 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.817308 B =11083.927743 C =11841.162694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.130 4.130 4 C -0.125 4.125 5 C -0.082 4.082 6 C -0.090 4.090 7 C 0.512 3.488 8 O -0.581 6.581 9 N -0.703 5.703 10 C 0.156 3.844 11 H 0.071 0.929 12 C 0.132 3.868 13 N -0.619 5.619 14 C -0.246 4.246 15 H 0.081 0.919 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.984 3.016 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.272 1.272 22 C 0.133 3.867 23 C 0.092 3.908 24 H 0.090 0.910 25 O -0.569 6.569 26 C -0.119 4.119 27 C -0.102 4.102 28 C -0.114 4.114 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.418 0.582 37 H 0.044 0.956 38 H 0.010 0.990 39 H 0.251 0.749 40 H -0.012 1.012 41 H 0.092 0.908 42 H 0.397 0.603 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.668 -5.979 -18.600 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.083 4.083 6 C -0.130 4.130 7 C 0.300 3.700 8 O -0.460 6.460 9 N -0.356 5.356 10 C 0.049 3.951 11 H 0.090 0.910 12 C 0.005 3.995 13 N -0.347 5.347 14 C -0.375 4.375 15 H 0.099 0.901 16 C -0.254 4.254 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.198 1.198 22 C 0.007 3.993 23 C 0.031 3.969 24 H 0.108 0.892 25 O -0.376 6.376 26 C -0.137 4.137 27 C -0.102 4.102 28 C -0.170 4.170 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.255 0.745 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.061 0.939 40 H 0.006 0.994 41 H 0.109 0.891 42 H 0.247 0.753 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.699 -5.828 -17.854 25.131 hybrid contribution 1.486 0.726 0.889 1.878 sum -15.212 -5.101 -16.965 23.350 Atomic orbital electron populations 1.20884 0.89550 1.03432 1.03145 1.20119 0.97443 0.92537 1.00158 1.21244 0.94148 0.98383 1.00994 1.21195 0.94900 0.97807 1.00372 1.19470 0.94486 0.93724 1.00594 1.20712 0.92363 1.07909 0.91983 1.21299 0.81672 0.74545 0.92494 1.90718 1.56378 1.50803 1.48146 1.45786 1.07392 1.74898 1.07507 1.21484 0.94692 0.94691 0.84225 0.91031 1.21670 0.88468 0.95154 0.94201 1.44547 1.25019 1.05482 1.59630 1.19412 1.04992 0.88005 1.25054 0.90149 1.25649 0.98537 1.00073 1.01173 1.69952 1.20984 1.22907 1.45737 0.85072 0.77235 0.78335 0.78181 1.20889 1.21573 1.19810 1.22379 1.00822 0.83454 0.92658 1.23265 0.94489 0.80876 0.98232 0.89198 1.86390 1.36131 1.18707 1.96398 1.21086 0.94205 0.97744 1.00684 1.20068 0.93708 0.96175 1.00282 1.20880 1.00157 0.92840 1.03161 0.89944 0.90487 0.91232 0.84706 0.85584 0.85181 0.85094 0.74488 0.93805 0.97207 0.93931 0.99383 0.89050 0.75279 0.85586 0.89817 0.91737 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.61 71.24 0.68 -0.92 16 2 C -0.10 -2.12 5.88 -19.86 -0.12 -2.23 16 3 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 4 C -0.12 -2.93 9.70 22.27 0.22 -2.72 16 5 C -0.08 -1.94 4.37 -19.87 -0.09 -2.03 16 6 C -0.09 -1.74 5.83 29.10 0.17 -1.57 16 7 C 0.51 15.07 7.82 87.66 0.69 15.75 16 8 O -0.58 -23.34 15.68 -3.02 -0.05 -23.39 16 9 N -0.70 -19.84 5.10 -436.94 -2.23 -22.07 16 10 C 0.16 5.91 3.05 46.17 0.14 6.05 16 11 H 0.07 3.18 7.55 -2.39 -0.02 3.16 16 12 C 0.13 5.85 6.99 86.73 0.61 6.45 16 13 N -0.62 -32.42 3.39 -692.00 -2.35 -34.77 16 14 C -0.25 -13.88 10.27 84.03 0.86 -13.02 16 15 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 16 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 17 N -0.95 -55.03 10.09 21.65 0.22 -54.82 16 18 Si 0.98 45.12 29.55 68.60 2.03 47.15 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 C 0.13 6.48 5.62 86.85 0.49 6.97 16 23 C 0.09 3.36 4.06 31.98 0.13 3.49 16 24 H 0.09 2.83 8.01 -2.38 -0.02 2.81 16 25 O -0.57 -18.77 13.47 -148.98 -2.01 -20.77 16 26 C -0.12 -2.76 9.36 22.27 0.21 -2.55 16 27 C -0.10 -2.19 5.88 -19.87 -0.12 -2.30 16 28 C -0.11 -1.74 9.60 71.23 0.68 -1.05 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.95 5.95 -2.39 -0.01 0.94 16 31 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 32 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.13 1.79 8.09 -2.39 -0.02 1.77 16 35 H 0.13 1.75 8.08 -2.38 -0.02 1.73 16 36 H 0.42 8.51 8.56 -92.71 -0.79 7.72 16 37 H 0.04 1.82 8.03 -2.39 -0.02 1.80 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.09 4.85 5.88 -2.38 -0.01 4.84 16 42 H 0.40 9.60 9.12 -74.06 -0.68 8.92 16 43 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 46 H 0.08 1.03 5.95 -2.38 -0.01 1.02 16 Total: -1.00 -76.67 376.11 0.39 -76.29 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.47 Total: 27.66 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.24 Total: 4.73 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -4.36 Total: -111.66 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -2.05 Total: -44.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.67 0.39 -76.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078140097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.929 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds