Wall clock time and date at job start Fri Apr 10 2020 18:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47469 * 2 1 4 4 C 1.50700 * 109.47142 * 120.00118 * 2 1 3 5 5 O 1.21291 * 120.00055 * 115.55628 * 4 2 1 6 6 N 1.34779 * 120.00041 * 295.55924 * 4 2 1 7 7 C 1.46496 * 119.99851 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.89139 * 37.42849 * 7 6 4 9 9 C 1.54910 * 111.00557 * 273.54207 * 7 6 4 10 10 N 1.47424 * 104.92898 * 204.82501 * 9 7 6 11 11 C 1.36940 * 125.64688 * 204.15504 * 10 9 7 12 12 H 1.07995 * 120.00020 * 0.02562 * 11 10 9 13 13 C 1.38809 * 119.99554 * 180.02562 * 11 10 9 14 14 N 1.31615 * 120.00616 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99606 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47287 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47432 * 119.99976 * 15 13 11 18 18 H 1.48502 * 109.47006 * 239.99896 * 15 13 11 19 19 C 1.47292 * 108.55966 * 24.15680 * 10 9 7 20 20 C 1.54320 * 107.30489 * 358.92496 * 19 10 9 21 21 H 1.09006 * 110.87544 * 96.25003 * 20 19 10 22 22 O 1.42900 * 110.72270 * 219.45114 * 20 19 10 23 23 C 1.50701 * 109.46734 * 239.99918 * 2 1 3 24 24 C 1.38233 * 119.99906 * 125.66582 * 23 2 1 25 25 C 1.38239 * 119.99856 * 179.78545 * 24 23 2 26 26 C 1.38239 * 120.00145 * 0.44140 * 25 24 23 27 27 C 1.38233 * 119.99682 * 359.81039 * 26 25 24 28 28 C 1.38237 * 120.00017 * 305.93377 * 23 2 1 29 29 H 1.09002 * 109.46880 * 300.00262 * 1 2 3 30 30 H 1.08996 * 109.47087 * 59.99745 * 1 2 3 31 31 H 1.08992 * 109.47357 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46981 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46860 * 299.99725 * 3 2 1 34 34 H 1.08994 * 109.46971 * 59.99861 * 3 2 1 35 35 H 0.96996 * 119.99624 * 359.97438 * 6 4 2 36 36 H 1.08993 * 110.36433 * 323.72343 * 9 7 6 37 37 H 1.09006 * 110.36329 * 85.93514 * 9 7 6 38 38 H 0.96996 * 120.00646 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.85734 * 239.49810 * 19 10 9 40 40 H 1.09000 * 110.00029 * 118.42502 * 19 10 9 41 41 H 0.96694 * 113.99900 * 293.52702 * 22 20 19 42 42 H 1.08000 * 120.00353 * 359.97438 * 24 23 2 43 43 H 1.08002 * 119.99969 * 180.27068 * 25 24 23 44 44 H 1.08000 * 119.99864 * 179.83263 * 26 25 24 45 45 H 1.07997 * 120.00021 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.00335 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6617 -1.7415 1.1210 6 7 1.7822 -0.2002 2.4526 7 6 2.2701 -0.8911 3.6487 8 1 3.2548 -1.3240 3.4730 9 6 1.2633 -1.9722 4.1149 10 7 1.5262 -2.1399 5.5558 11 6 1.2426 -3.2579 6.2940 12 1 0.7871 -4.1156 5.8216 13 6 1.5407 -3.2886 7.6493 14 7 2.0954 -2.2431 8.2251 15 14 1.1546 -4.8139 8.6562 16 1 0.5374 -5.8421 7.7803 17 1 2.4090 -5.3507 9.2425 18 1 0.2099 -4.4613 9.7463 19 6 2.1441 -0.9042 6.0665 20 6 2.2921 0.0624 4.8726 21 1 1.4563 0.7609 4.8324 22 8 3.5338 0.7662 4.9428 23 6 2.0322 -0.7104 -1.2305 24 6 2.9207 -0.0777 -2.0797 25 6 3.3848 -0.7310 -3.2060 26 6 2.9535 -2.0137 -3.4881 27 6 2.0610 -2.6445 -2.6416 28 6 1.6002 -1.9928 -1.5129 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.2792 0.6245 2.5400 36 1 0.2403 -1.6330 3.9528 37 1 1.4401 -2.9086 3.5856 38 1 2.3041 -2.2647 9.1721 39 1 3.1247 -1.1270 6.4869 40 1 1.5069 -0.4564 6.8291 41 1 3.5986 1.3757 5.6907 42 1 3.2546 0.9260 -1.8616 43 1 4.0823 -0.2383 -3.8672 44 1 3.3140 -2.5231 -4.3695 45 1 1.7236 -3.6465 -2.8621 46 1 0.9030 -2.4858 -0.8516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078149817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:28 Heat of formation + Delta-G solvation = -32.740720 kcal Electronic energy + Delta-G solvation = -27224.637951 eV Core-core repulsion = 23500.872576 eV Total energy + Delta-G solvation = -3723.765375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62902 -38.92472 -37.74868 -35.32013 -35.06142 -33.97613 -31.67140 -31.08818 -29.79226 -28.32048 -27.61701 -26.99962 -24.66068 -23.88164 -22.35256 -21.90317 -20.55243 -20.26581 -19.35564 -17.49649 -16.95514 -16.90070 -16.46929 -15.77453 -15.24613 -15.03856 -14.62176 -14.49105 -14.15271 -14.08401 -13.98776 -13.52350 -13.21409 -12.89640 -12.70198 -12.62707 -12.40079 -12.31964 -12.24885 -12.07020 -11.86226 -11.67592 -11.46114 -11.25553 -10.94362 -10.88894 -10.83226 -10.78547 -10.13325 -9.90186 -9.84771 -9.63775 -9.29046 -8.90056 -8.80799 -8.74190 -8.63120 -6.91549 -5.76850 -3.11061 1.30764 1.41249 2.83735 3.28803 3.38786 3.44676 3.47052 3.83840 4.33625 4.42987 4.59317 4.61546 4.75452 4.91016 4.95960 5.00254 5.09250 5.18641 5.33744 5.38118 5.43602 5.49805 5.53695 5.56792 5.61735 5.63137 5.67033 5.80656 5.86305 5.96461 5.96907 6.01499 6.09332 6.14048 6.43544 6.49238 6.54305 6.59119 6.63442 6.90256 6.97526 7.31072 7.45911 7.69631 7.75447 8.09953 8.16471 8.45086 9.14422 9.74769 10.38124 11.35272 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.003128 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.742172 B = 8950.359402 C = 9753.541784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.143 4.143 4 C 0.522 3.478 5 O -0.527 6.527 6 N -0.713 5.713 7 C 0.140 3.860 8 H 0.101 0.899 9 C 0.131 3.869 10 N -0.600 5.600 11 C -0.227 4.227 12 H 0.081 0.919 13 C -0.008 4.008 14 N -0.924 5.924 15 Si 0.915 3.085 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.153 3.847 20 C 0.069 3.931 21 H 0.057 0.943 22 O -0.563 6.563 23 C -0.058 4.058 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.086 4.086 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.023 0.977 37 H 0.050 0.950 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.376 0.624 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 10.029 -19.802 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.046 4.046 3 C -0.200 4.200 4 C 0.307 3.693 5 O -0.402 6.402 6 N -0.364 5.364 7 C 0.035 3.965 8 H 0.119 0.881 9 C 0.003 3.997 10 N -0.328 5.328 11 C -0.355 4.355 12 H 0.099 0.901 13 C -0.204 4.204 14 N -0.572 5.572 15 Si 0.745 3.255 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.217 1.217 19 C 0.028 3.972 20 C 0.009 3.991 21 H 0.075 0.925 22 O -0.368 6.368 23 C -0.058 4.058 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.104 4.104 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.230 0.770 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.223 0.777 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.548 8.841 -20.183 22.089 hybrid contribution -0.498 -0.079 1.271 1.368 sum -2.046 8.763 -18.912 20.944 Atomic orbital electron populations 1.21880 0.91577 1.03193 1.02874 1.19729 0.97386 0.96033 0.91479 1.21956 1.02000 0.93219 1.02871 1.20270 0.79746 0.85166 0.84106 1.90739 1.39477 1.23600 1.86422 1.45906 1.57144 1.27752 1.05576 1.22230 0.99534 0.92715 0.82034 0.88110 1.21834 0.94869 0.96238 0.86719 1.44310 1.72175 1.13703 1.02596 1.19138 1.34240 0.91760 0.90371 0.90090 1.24811 1.00892 0.98029 0.96681 1.69923 1.47851 1.28641 1.10747 0.85997 0.77511 0.81940 0.80044 1.20408 1.21652 1.21728 1.21852 0.99466 0.85018 0.90894 1.23446 0.85234 0.93324 0.97089 0.92513 1.86469 1.37459 1.60364 1.52520 1.19298 0.97446 0.94629 0.94456 1.21117 0.97220 1.00278 0.94821 1.21066 1.00303 0.95318 0.97627 1.21118 0.98026 0.95333 0.99651 1.21109 0.98067 0.99772 0.95034 1.20952 0.99334 0.93919 0.96204 0.91550 0.91235 0.91634 0.91549 0.91096 0.91631 0.77048 0.95964 0.93198 0.93712 0.92111 0.93304 0.77693 0.85758 0.86301 0.86407 0.86203 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.17 37.16 0.30 -0.97 16 2 C -0.04 -0.49 0.72 -156.81 -0.11 -0.60 16 3 C -0.14 -1.26 7.01 37.16 0.26 -1.00 16 4 C 0.52 8.04 6.40 -10.98 -0.07 7.97 16 5 O -0.53 -10.45 15.07 5.55 0.08 -10.36 16 6 N -0.71 -10.55 5.05 -51.73 -0.26 -10.81 16 7 C 0.14 2.66 3.04 -65.78 -0.20 2.46 16 8 H 0.10 2.23 7.73 -51.93 -0.40 1.83 16 9 C 0.13 2.82 6.92 -2.53 -0.02 2.81 16 10 N -0.60 -15.45 3.40 -169.86 -0.58 -16.02 16 11 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 12 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 13 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 14 N -0.92 -26.83 10.33 55.49 0.57 -26.26 16 15 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 C 0.15 3.63 5.16 -2.92 -0.02 3.62 16 20 C 0.07 1.26 3.96 -24.89 -0.10 1.17 16 21 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 22 O -0.56 -9.65 13.39 -35.23 -0.47 -10.12 16 23 C -0.06 -0.72 4.33 -104.62 -0.45 -1.17 16 24 C -0.12 -1.29 8.99 -39.58 -0.36 -1.65 16 25 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 27 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 28 C -0.09 -1.11 8.15 -39.58 -0.32 -1.43 16 29 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.66 7.08 -51.93 -0.37 0.29 16 32 H 0.07 0.64 7.25 -51.93 -0.38 0.26 16 33 H 0.07 0.50 7.78 -51.93 -0.40 0.09 16 34 H 0.06 0.50 7.33 -51.93 -0.38 0.12 16 35 H 0.40 4.63 7.41 -40.82 -0.30 4.33 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.06 1.63 7.31 -51.93 -0.38 1.25 16 40 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 41 H 0.38 4.86 9.12 45.56 0.42 5.27 16 42 H 0.12 1.14 5.91 -52.49 -0.31 0.82 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.12 1.55 7.23 -52.49 -0.38 1.17 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -34.24 369.12 -8.82 -43.06 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.18 Total: 8.62 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.52 Total: -0.83 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.27 Total: -53.09 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.39 Total: -20.48 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.24 -8.82 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078149817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.320 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds