Wall clock time and date at job start Fri Apr 10 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47469 * 2 1 4 4 C 1.50700 * 109.47142 * 120.00118 * 2 1 3 5 5 O 1.21291 * 120.00055 * 115.55628 * 4 2 1 6 6 N 1.34779 * 120.00041 * 295.55924 * 4 2 1 7 7 C 1.46496 * 119.99851 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.89139 * 37.42849 * 7 6 4 9 9 C 1.54910 * 111.00557 * 273.54207 * 7 6 4 10 10 N 1.47424 * 104.92898 * 204.82501 * 9 7 6 11 11 C 1.36940 * 125.64688 * 204.15504 * 10 9 7 12 12 H 1.07995 * 120.00020 * 0.02562 * 11 10 9 13 13 C 1.38809 * 119.99554 * 180.02562 * 11 10 9 14 14 N 1.31615 * 120.00616 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99606 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47287 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47432 * 119.99976 * 15 13 11 18 18 H 1.48502 * 109.47006 * 239.99896 * 15 13 11 19 19 C 1.47292 * 108.55966 * 24.15680 * 10 9 7 20 20 C 1.54320 * 107.30489 * 358.92496 * 19 10 9 21 21 H 1.09006 * 110.87544 * 96.25003 * 20 19 10 22 22 O 1.42900 * 110.72270 * 219.45114 * 20 19 10 23 23 C 1.50701 * 109.46734 * 239.99918 * 2 1 3 24 24 C 1.38233 * 119.99906 * 125.66582 * 23 2 1 25 25 C 1.38239 * 119.99856 * 179.78545 * 24 23 2 26 26 C 1.38239 * 120.00145 * 0.44140 * 25 24 23 27 27 C 1.38233 * 119.99682 * 359.81039 * 26 25 24 28 28 C 1.38237 * 120.00017 * 305.93377 * 23 2 1 29 29 H 1.09002 * 109.46880 * 300.00262 * 1 2 3 30 30 H 1.08996 * 109.47087 * 59.99745 * 1 2 3 31 31 H 1.08992 * 109.47357 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46981 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46860 * 299.99725 * 3 2 1 34 34 H 1.08994 * 109.46971 * 59.99861 * 3 2 1 35 35 H 0.96996 * 119.99624 * 359.97438 * 6 4 2 36 36 H 1.08993 * 110.36433 * 323.72343 * 9 7 6 37 37 H 1.09006 * 110.36329 * 85.93514 * 9 7 6 38 38 H 0.96996 * 120.00646 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.85734 * 239.49810 * 19 10 9 40 40 H 1.09000 * 110.00029 * 118.42502 * 19 10 9 41 41 H 0.96694 * 113.99900 * 293.52702 * 22 20 19 42 42 H 1.08000 * 120.00353 * 359.97438 * 24 23 2 43 43 H 1.08002 * 119.99969 * 180.27068 * 25 24 23 44 44 H 1.08000 * 119.99864 * 179.83263 * 26 25 24 45 45 H 1.07997 * 120.00021 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.00335 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6617 -1.7415 1.1210 6 7 1.7822 -0.2002 2.4526 7 6 2.2701 -0.8911 3.6487 8 1 3.2548 -1.3240 3.4730 9 6 1.2633 -1.9722 4.1149 10 7 1.5262 -2.1399 5.5558 11 6 1.2426 -3.2579 6.2940 12 1 0.7871 -4.1156 5.8216 13 6 1.5407 -3.2886 7.6493 14 7 2.0954 -2.2431 8.2251 15 14 1.1546 -4.8139 8.6562 16 1 0.5374 -5.8421 7.7803 17 1 2.4090 -5.3507 9.2425 18 1 0.2099 -4.4613 9.7463 19 6 2.1441 -0.9042 6.0665 20 6 2.2921 0.0624 4.8726 21 1 1.4563 0.7609 4.8324 22 8 3.5338 0.7662 4.9428 23 6 2.0322 -0.7104 -1.2305 24 6 2.9207 -0.0777 -2.0797 25 6 3.3848 -0.7310 -3.2060 26 6 2.9535 -2.0137 -3.4881 27 6 2.0610 -2.6445 -2.6416 28 6 1.6002 -1.9928 -1.5129 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.2792 0.6245 2.5400 36 1 0.2403 -1.6330 3.9528 37 1 1.4401 -2.9086 3.5856 38 1 2.3041 -2.2647 9.1721 39 1 3.1247 -1.1270 6.4869 40 1 1.5069 -0.4564 6.8291 41 1 3.5986 1.3757 5.6907 42 1 3.2546 0.9260 -1.8616 43 1 4.0823 -0.2383 -3.8672 44 1 3.3140 -2.5231 -4.3695 45 1 1.7236 -3.6465 -2.8621 46 1 0.9030 -2.4858 -0.8516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078149817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:27 Heat of formation + Delta-G solvation = -57.439135 kcal Electronic energy + Delta-G solvation = -27225.708955 eV Core-core repulsion = 23500.872576 eV Total energy + Delta-G solvation = -3724.836379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72195 -40.15521 -39.13316 -36.69133 -36.27889 -35.51029 -33.57247 -31.90947 -30.78400 -30.01281 -28.73204 -28.29856 -26.47401 -24.92441 -23.27128 -23.00354 -22.29976 -21.81745 -20.48818 -19.11902 -18.32888 -18.18524 -17.60574 -17.31030 -16.61919 -16.21321 -15.90895 -15.87909 -15.51340 -15.30232 -14.95888 -14.71378 -14.49140 -14.35660 -14.26516 -13.80025 -13.66456 -13.34435 -13.26108 -13.17963 -13.06890 -12.99290 -12.78393 -12.75049 -12.60665 -12.42761 -12.07431 -11.90903 -11.75665 -11.59940 -11.53387 -11.06850 -10.80271 -10.67297 -10.16730 -9.74887 -9.60185 -8.99069 -7.91188 -5.28242 0.45505 0.56364 1.44041 1.45559 1.55819 1.63008 2.06352 2.45922 2.95214 3.10982 3.29858 3.47790 3.51957 3.70477 3.87973 3.91482 4.03865 4.05408 4.18444 4.19459 4.23500 4.30528 4.42314 4.55345 4.61352 4.68322 4.76722 4.79604 4.84805 4.86776 4.91342 4.99368 5.13960 5.18936 5.24207 5.27665 5.34426 5.41456 5.45382 5.61982 5.64090 5.66081 5.73629 6.11070 6.16042 6.55003 6.86217 7.02419 7.25902 7.66548 8.29487 9.18923 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.003128 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.742172 B = 8950.359402 C = 9753.541784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 C -0.142 4.142 4 C 0.519 3.481 5 O -0.577 6.577 6 N -0.698 5.698 7 C 0.155 3.845 8 H 0.064 0.936 9 C 0.133 3.867 10 N -0.622 5.622 11 C -0.248 4.248 12 H 0.079 0.921 13 C -0.060 4.060 14 N -0.947 5.947 15 Si 0.980 3.020 16 H -0.269 1.269 17 H -0.292 1.292 18 H -0.286 1.286 19 C 0.160 3.840 20 C 0.093 3.907 21 H 0.098 0.902 22 O -0.568 6.568 23 C -0.076 4.076 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.137 4.137 28 C -0.110 4.110 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.250 0.750 39 H 0.020 0.980 40 H 0.028 0.972 41 H 0.397 0.603 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.130 0.870 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 12.000 -21.418 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.037 4.037 3 C -0.199 4.199 4 C 0.306 3.694 5 O -0.456 6.456 6 N -0.350 5.350 7 C 0.048 3.952 8 H 0.083 0.917 9 C 0.006 3.994 10 N -0.350 5.350 11 C -0.377 4.377 12 H 0.097 0.903 13 C -0.254 4.254 14 N -0.596 5.596 15 Si 0.808 3.192 16 H -0.193 1.193 17 H -0.219 1.219 18 H -0.212 1.212 19 C 0.034 3.966 20 C 0.033 3.967 21 H 0.115 0.885 22 O -0.376 6.376 23 C -0.077 4.077 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.155 4.155 28 C -0.129 4.129 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.253 0.747 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.247 0.753 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.148 0.852 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.227 10.868 -21.822 24.480 hybrid contribution -0.247 -0.727 1.718 1.882 sum -2.474 10.141 -20.104 22.652 Atomic orbital electron populations 1.21917 0.89916 1.02835 1.04706 1.19739 0.98567 0.96848 0.88521 1.22012 1.01518 0.91398 1.04981 1.21149 0.78527 0.84553 0.85144 1.90720 1.41731 1.25995 1.87143 1.45668 1.57027 1.28089 1.04200 1.21676 0.97028 0.92494 0.83953 0.91743 1.21902 0.96492 0.96430 0.84584 1.44579 1.72287 1.13882 1.04250 1.19463 1.34337 0.92775 0.91115 0.90275 1.25641 1.01062 1.00991 0.97681 1.70120 1.48543 1.30234 1.10656 0.84987 0.77061 0.78716 0.78404 1.19319 1.21887 1.21226 1.21678 0.96532 0.85512 0.92830 1.23126 0.87101 0.92779 0.93673 0.88473 1.86435 1.36905 1.60623 1.53657 1.19526 0.98197 0.94714 0.95242 1.21433 0.96643 1.01292 0.94799 1.21467 1.00225 0.95293 0.97709 1.21460 0.97373 0.95669 1.00112 1.21358 0.98573 1.00484 0.95055 1.21035 1.00149 0.94794 0.96874 0.89944 0.89134 0.93166 0.92395 0.88579 0.90002 0.74671 0.93993 0.95381 0.94091 0.96200 0.95355 0.75307 0.83722 0.83634 0.84049 0.85180 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.17 71.98 0.59 -1.64 16 2 C -0.03 -0.70 0.72 -53.67 -0.04 -0.74 16 3 C -0.14 -2.03 7.01 71.98 0.50 -1.53 16 4 C 0.52 15.73 6.40 87.66 0.56 16.29 16 5 O -0.58 -23.60 15.07 -3.06 -0.05 -23.65 16 6 N -0.70 -19.63 5.05 -435.95 -2.20 -21.83 16 7 C 0.16 5.88 3.04 46.39 0.14 6.02 16 8 H 0.06 2.95 7.73 -2.39 -0.02 2.93 16 9 C 0.13 5.82 6.92 86.86 0.60 6.42 16 10 N -0.62 -32.86 3.40 -691.32 -2.35 -35.21 16 11 C -0.25 -14.32 10.28 84.03 0.86 -13.46 16 12 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 13 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 14 N -0.95 -56.39 10.33 21.65 0.22 -56.17 16 15 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 C 0.16 7.75 5.16 86.68 0.45 8.20 16 20 C 0.09 3.31 3.96 31.78 0.13 3.43 16 21 H 0.10 2.74 8.00 -2.38 -0.02 2.72 16 22 O -0.57 -18.58 13.39 -148.98 -1.99 -20.58 16 23 C -0.08 -1.82 4.33 -19.87 -0.09 -1.91 16 24 C -0.12 -2.50 8.99 22.27 0.20 -2.30 16 25 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 26 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 27 C -0.14 -3.13 10.05 22.27 0.22 -2.90 16 28 C -0.11 -2.89 8.15 22.27 0.18 -2.71 16 29 H 0.08 1.06 7.88 -2.39 -0.02 1.05 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.98 7.08 -2.39 -0.02 0.96 16 32 H 0.06 0.95 7.25 -2.39 -0.02 0.93 16 33 H 0.10 0.93 7.78 -2.38 -0.02 0.91 16 34 H 0.08 0.91 7.33 -2.39 -0.02 0.89 16 35 H 0.42 8.38 7.41 -92.71 -0.69 7.69 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.02 1.11 7.31 -2.39 -0.02 1.09 16 40 H 0.03 1.47 7.51 -2.39 -0.02 1.45 16 41 H 0.40 9.44 9.12 -74.06 -0.68 8.76 16 42 H 0.15 2.21 5.91 -2.91 -0.02 2.20 16 43 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 46 H 0.10 2.91 7.23 -2.91 -0.02 2.89 16 Total: -1.00 -78.05 369.12 0.52 -77.54 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.36 Total: 25.84 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.23 Total: 5.75 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -4.33 Total: -113.21 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -2.04 Total: -44.23 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -78.05 0.52 -77.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078149817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.098 kcal (2) G-P(sol) polarization free energy of solvation -78.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds