Wall clock time and date at job start Fri Apr 10 2020 18:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 119.99973 * 2 1 4 4 C 1.38238 * 119.99978 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00253 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99613 * 0.02562 * 4 3 2 7 7 C 1.38231 * 120.00299 * 359.95622 * 6 4 3 8 8 C 1.50704 * 119.99930 * 180.02562 * 7 6 4 9 9 C 1.50702 * 109.47325 * 89.99552 * 8 7 6 10 10 O 1.21279 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99585 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99771 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.77782 * 36.78385 * 12 11 9 14 14 C 1.54316 * 110.71772 * 273.54514 * 12 11 9 15 15 N 1.47022 * 107.27320 * 263.82953 * 14 12 11 16 16 C 1.36938 * 125.65145 * 181.02283 * 15 14 12 17 17 H 1.08002 * 119.99798 * 13.61610 * 16 15 14 18 18 C 1.38805 * 120.00326 * 193.61334 * 16 15 14 19 19 N 1.31623 * 120.00152 * 27.28149 * 18 16 15 20 20 Si 1.86803 * 120.00275 * 207.28323 * 18 16 15 21 21 H 1.48501 * 109.46920 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47248 * 239.99936 * 20 18 16 23 23 H 1.48500 * 109.46962 * 119.99939 * 20 18 16 24 24 C 1.47423 * 108.69958 * 1.28573 * 15 14 12 25 25 C 1.55125 * 104.72395 * 335.55457 * 24 15 14 26 26 H 1.09001 * 111.19051 * 279.19096 * 25 24 15 27 27 O 1.42902 * 110.93665 * 155.28677 * 25 24 15 28 28 C 1.38235 * 119.99767 * 180.21486 * 2 1 3 29 29 H 1.09000 * 109.47451 * 89.99871 * 1 2 3 30 30 H 1.08998 * 109.47093 * 209.99585 * 1 2 3 31 31 H 1.09006 * 109.47187 * 329.99474 * 1 2 3 32 32 H 1.07994 * 120.00093 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47314 * 270.03046 * 5 4 3 34 34 H 1.09004 * 109.47070 * 30.02288 * 5 4 3 35 35 H 1.09000 * 109.47401 * 150.02263 * 5 4 3 36 36 H 1.08003 * 119.99796 * 179.97438 * 6 4 3 37 37 H 1.09005 * 109.46772 * 329.99515 * 8 7 6 38 38 H 1.08999 * 109.46673 * 210.00014 * 8 7 6 39 39 H 0.97003 * 120.00897 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.88637 * 144.40958 * 14 12 11 41 41 H 1.09003 * 109.88406 * 23.24623 * 14 12 11 42 42 H 0.97003 * 119.99184 * 5.85303 * 19 18 16 43 43 H 1.09002 * 110.36499 * 94.49043 * 24 15 14 44 44 H 1.09005 * 110.36367 * 216.80049 * 24 15 14 45 45 H 0.96700 * 113.99787 * 67.96452 * 27 25 24 46 46 H 1.07997 * 120.00587 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0016 7 6 3.5805 -1.1972 -0.0012 8 6 4.3340 -2.5023 -0.0018 9 6 4.5862 -2.9374 1.4188 10 8 4.1925 -2.2552 2.3410 11 7 5.2494 -4.0847 1.6644 12 6 5.4941 -4.5080 3.0455 13 1 4.6454 -4.2590 3.6824 14 6 6.7905 -3.8720 3.5898 15 7 7.8681 -4.8560 3.4108 16 6 9.1744 -4.6859 3.7847 17 1 9.4461 -3.8749 4.4441 18 6 10.1493 -5.5559 3.3164 19 7 9.9844 -6.1704 2.1641 20 14 11.6954 -5.8547 4.3213 21 1 11.6383 -5.0503 5.5683 22 1 12.8860 -5.4559 3.5284 23 1 11.7906 -7.2959 4.6664 24 6 7.3107 -6.0536 2.7563 25 6 5.8000 -6.0278 3.1078 26 1 5.6215 -6.4216 4.1084 27 8 5.0370 -6.7441 2.1347 28 6 2.1981 -1.1972 -0.0045 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6582 2.1324 0.0004 33 1 4.5149 2.8169 -1.0289 34 1 3.7454 3.2619 0.5131 35 1 5.2869 2.3719 0.5120 36 1 5.3517 -0.0001 -0.0024 37 1 5.2861 -2.3719 -0.5164 38 1 3.7445 -3.2618 -0.5153 39 1 5.5640 -4.6306 0.9269 40 1 6.6732 -3.6391 4.6482 41 1 7.0208 -2.9644 3.0318 42 1 9.2241 -5.9522 1.6026 43 1 7.4526 -5.9967 1.6771 44 1 7.7771 -6.9550 3.1540 45 1 5.1946 -7.6982 2.1359 46 1 1.6582 -2.1325 -0.0084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083747994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:53 Heat of formation + Delta-G solvation = -70.927817 kcal Electronic energy + Delta-G solvation = -26603.302474 eV Core-core repulsion = 22877.881182 eV Total energy + Delta-G solvation = -3725.421292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37105 -40.41417 -39.31560 -36.86094 -35.48404 -34.51228 -34.38937 -33.57276 -30.47269 -29.54667 -28.68778 -27.80622 -27.57652 -26.19960 -23.08596 -22.32767 -21.63989 -21.46364 -21.10203 -19.69559 -18.55819 -18.07740 -17.32892 -17.07328 -16.90683 -16.55069 -16.04229 -15.57621 -15.52188 -15.32635 -15.06949 -14.82450 -14.53101 -14.29332 -14.09630 -14.01095 -13.86633 -13.85768 -13.46264 -13.35817 -13.16244 -12.89826 -12.72287 -12.56864 -12.54095 -12.36943 -12.00350 -11.89856 -11.87570 -11.87028 -11.74639 -11.06587 -10.93839 -10.58561 -10.13497 -9.53277 -9.43984 -9.11098 -8.37794 -5.38175 0.39432 0.46144 1.57230 1.60607 1.64388 1.81657 2.12713 2.58018 2.81515 2.94855 3.16272 3.47713 3.60631 3.64248 3.77662 3.84137 3.92972 3.99061 4.11843 4.21291 4.31432 4.35805 4.41635 4.46328 4.50831 4.57927 4.66079 4.68757 4.73505 4.78606 4.81181 4.84643 4.91920 4.98001 5.05483 5.06146 5.25843 5.35030 5.44802 5.58397 5.60533 5.63269 5.71121 6.13893 6.25944 6.52476 6.74847 6.82841 7.21621 7.63081 8.17087 8.95285 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.002917 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.099816 B = 9596.611169 C =10584.586357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.094 4.094 5 C -0.112 4.112 6 C -0.136 4.136 7 C -0.068 4.068 8 C -0.096 4.096 9 C 0.514 3.486 10 O -0.577 6.577 11 N -0.699 5.699 12 C 0.154 3.846 13 H 0.099 0.901 14 C 0.128 3.872 15 N -0.619 5.619 16 C -0.349 4.349 17 H 0.058 0.942 18 C -0.073 4.073 19 N -0.943 5.943 20 Si 1.120 2.880 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.126 3.874 25 C 0.100 3.900 26 H 0.093 0.907 27 O -0.556 6.556 28 C -0.127 4.127 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.130 0.870 39 H 0.411 0.589 40 H 0.036 0.964 41 H 0.010 0.990 42 H 0.258 0.742 43 H 0.019 0.981 44 H 0.033 0.967 45 H 0.400 0.600 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.812 8.219 -7.043 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.094 4.094 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.069 4.069 8 C -0.135 4.135 9 C 0.302 3.698 10 O -0.457 6.457 11 N -0.350 5.350 12 C 0.048 3.952 13 H 0.117 0.883 14 C 0.001 3.999 15 N -0.347 5.347 16 C -0.478 4.478 17 H 0.075 0.925 18 C -0.269 4.269 19 N -0.586 5.586 20 Si 0.944 3.056 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.209 1.209 24 C 0.000 4.000 25 C 0.039 3.961 26 H 0.110 0.890 27 O -0.363 6.363 28 C -0.145 4.145 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.158 0.842 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.247 0.753 40 H 0.054 0.946 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.052 0.948 45 H 0.250 0.750 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.843 8.432 -6.398 19.892 hybrid contribution -0.433 0.107 -0.196 0.487 sum -17.275 8.540 -6.593 20.367 Atomic orbital electron populations 1.20811 0.89203 1.03390 1.03230 1.20230 0.97567 0.92779 0.98628 1.21168 0.93371 0.98394 1.02047 1.20187 0.94551 0.95733 0.98915 1.20814 0.99670 0.93201 1.03139 1.21038 0.99706 0.92375 1.02266 1.19412 0.94091 0.93750 0.99610 1.20700 1.03412 0.96637 0.92747 1.21068 0.76523 0.79971 0.92262 1.90680 1.52848 1.54491 1.47689 1.45681 1.57213 1.23877 1.08197 1.21742 0.96317 0.92649 0.84511 0.88308 1.21803 0.87932 0.92196 0.97923 1.44638 1.04895 1.13350 1.71833 1.20050 0.84200 1.17324 1.26190 0.92454 1.27094 1.04338 0.97699 0.97755 1.70861 1.31179 1.47558 1.09023 0.82796 0.71972 0.76602 0.74202 1.20203 1.21780 1.20905 1.22153 0.92567 0.90010 0.95269 1.23099 0.89301 0.90743 0.92908 0.88979 1.86351 1.65966 1.25484 1.58517 1.21050 0.93219 0.98554 1.01698 0.89809 0.91372 0.90580 0.84162 0.89874 0.90330 0.92059 0.86756 0.86753 0.85212 0.75314 0.94566 0.97171 0.93073 0.96371 0.94847 0.74952 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.92 16 2 C -0.09 -2.00 5.88 -19.87 -0.12 -2.11 16 3 C -0.13 -2.82 9.36 22.27 0.21 -2.62 16 4 C -0.09 -2.21 5.88 -19.87 -0.12 -2.33 16 5 C -0.11 -2.00 10.01 71.23 0.71 -1.29 16 6 C -0.14 -3.66 9.36 22.27 0.21 -3.45 16 7 C -0.07 -1.81 4.37 -19.87 -0.09 -1.89 16 8 C -0.10 -2.31 5.83 29.10 0.17 -2.14 16 9 C 0.51 16.71 7.82 87.66 0.69 17.39 16 10 O -0.58 -23.22 15.77 -3.03 -0.05 -23.27 16 11 N -0.70 -22.68 4.78 -436.93 -2.09 -24.76 16 12 C 0.15 5.54 3.13 46.17 0.14 5.69 16 13 H 0.10 3.50 7.70 -2.39 -0.02 3.48 16 14 C 0.13 5.67 6.98 86.73 0.61 6.28 16 15 N -0.62 -31.43 3.33 -691.57 -2.30 -33.73 16 16 C -0.35 -19.97 10.05 84.03 0.84 -19.13 16 17 H 0.06 3.33 7.96 -2.91 -0.02 3.30 16 18 C -0.07 -4.13 5.09 84.86 0.43 -3.70 16 19 N -0.94 -56.31 12.82 21.65 0.28 -56.04 16 20 Si 1.12 50.87 30.00 68.60 2.06 52.92 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 C 0.13 5.54 4.93 86.93 0.43 5.97 16 25 C 0.10 3.33 4.23 32.06 0.14 3.47 16 26 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 27 O -0.56 -14.92 12.63 -148.98 -1.88 -16.81 16 28 C -0.13 -3.09 9.36 22.27 0.21 -2.88 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 32 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 35 H 0.06 1.15 8.09 -2.39 -0.02 1.14 16 36 H 0.11 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.11 2.47 8.09 -2.38 -0.02 2.45 16 38 H 0.13 2.36 8.08 -2.39 -0.02 2.35 16 39 H 0.41 12.31 8.20 -92.71 -0.76 11.55 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.01 0.50 8.04 -2.39 -0.02 0.48 16 42 H 0.26 15.49 5.83 -92.71 -0.54 14.95 16 43 H 0.02 0.87 6.84 -2.39 -0.02 0.85 16 44 H 0.03 1.61 7.73 -2.38 -0.02 1.59 16 45 H 0.40 7.45 9.12 -74.06 -0.68 6.77 16 46 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -74.95 379.62 0.98 -73.97 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.21 Total: 31.36 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.18 Total: -3.65 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -4.11 Total: -114.53 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.93 Total: -40.07 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.06 Total: 52.92 kcal Total: -74.95 0.98 -73.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083747994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.042 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds