Wall clock time and date at job start Fri Apr 10 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 120.00378 * 2 1 4 4 C 1.38207 * 119.99994 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00285 * 359.75434 * 4 3 2 6 6 C 1.50696 * 120.00126 * 180.26982 * 5 4 3 7 7 C 1.38213 * 119.99392 * 0.50413 * 5 4 3 8 8 C 1.50707 * 119.99871 * 179.77005 * 7 5 4 9 9 C 1.50695 * 109.47011 * 84.72375 * 8 7 5 10 10 O 1.21274 * 120.00413 * 0.27295 * 9 8 7 11 11 N 1.34784 * 119.99635 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.64114 * 36.68525 * 12 11 9 14 14 C 1.54326 * 110.72219 * 273.54924 * 12 11 9 15 15 N 1.47018 * 107.26875 * 219.44590 * 14 12 11 16 16 C 1.36938 * 125.64584 * 178.97875 * 15 14 12 17 17 H 1.07996 * 120.00151 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00078 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00344 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46923 * 59.99455 * 20 18 16 22 22 H 1.48497 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46668 * 299.99840 * 20 18 16 24 24 C 1.47421 * 108.70815 * 358.93340 * 15 14 12 25 25 C 1.54915 * 104.82861 * 24.13309 * 24 15 14 26 26 H 1.08996 * 111.00586 * 204.91698 * 25 24 15 27 27 O 1.42898 * 111.00484 * 81.06423 * 25 24 15 28 28 C 1.38214 * 119.99415 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46759 * 270.01961 * 1 2 3 30 30 H 1.08996 * 109.47140 * 30.01342 * 1 2 3 31 31 H 1.08996 * 109.47358 * 150.01802 * 1 2 3 32 32 H 1.08002 * 119.99627 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99969 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47464 * 270.22935 * 6 5 4 35 35 H 1.09001 * 109.47229 * 30.23360 * 6 5 4 36 36 H 1.09008 * 109.46709 * 150.23056 * 6 5 4 37 37 H 1.09005 * 109.46877 * 324.72248 * 8 7 5 38 38 H 1.09002 * 109.46993 * 204.72595 * 8 7 5 39 39 H 0.96999 * 120.00044 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.87612 * 338.85652 * 14 12 11 41 41 H 1.08998 * 109.88722 * 99.86987 * 14 12 11 42 42 H 0.96996 * 120.00189 * 180.02562 * 19 18 16 43 43 H 1.08998 * 110.36698 * 142.96768 * 24 15 14 44 44 H 1.09001 * 110.36976 * 265.29762 * 24 15 14 45 45 H 0.96696 * 114.00075 * 67.80844 * 27 25 24 46 46 H 1.08002 * 120.00725 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0062 6 6 5.7787 -0.0002 0.0129 7 6 3.5806 -1.1971 0.0008 8 6 4.3340 -2.5023 0.0017 9 6 4.6918 -2.8747 1.4174 10 8 4.3628 -2.1541 2.3357 11 7 5.3733 -4.0112 1.6635 12 6 5.7217 -4.3730 3.0397 13 1 4.9222 -4.0917 3.7251 14 6 7.0544 -3.7158 3.4564 15 7 7.7979 -4.7032 4.2524 16 6 9.0413 -4.5176 4.7953 17 1 9.5588 -3.5806 4.6518 18 6 9.6366 -5.5338 5.5300 19 7 9.0058 -6.6756 5.7053 20 14 11.3331 -5.2809 6.2700 21 1 11.2967 -4.1321 7.2103 22 1 11.7415 -6.5066 7.0021 23 1 12.3093 -5.0026 5.1861 24 6 6.9828 -5.9259 4.3703 25 6 6.0335 -5.8892 3.1466 26 1 5.1263 -6.4620 3.3385 27 8 6.6951 -6.3601 1.9708 28 6 2.1980 -1.1970 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6584 2.1326 0.0004 33 1 4.1205 2.1325 0.0010 34 1 6.1466 0.0017 -1.0130 35 1 6.1397 0.8888 0.5301 36 1 6.1396 -0.8913 0.5268 37 1 5.2449 -2.3964 -0.5875 38 1 3.7091 -3.2828 -0.4324 39 1 5.6337 -4.5892 0.9294 40 1 7.6282 -3.4468 2.5695 41 1 6.8579 -2.8261 4.0546 42 1 9.4216 -7.3855 6.2191 43 1 7.6182 -6.8107 4.3310 44 1 6.4083 -5.9111 5.2965 45 1 6.9103 -7.3026 1.9914 46 1 1.6580 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083750090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:57 Heat of formation + Delta-G solvation = -40.664191 kcal Electronic energy + Delta-G solvation = -26746.752019 eV Core-core repulsion = 23022.643056 eV Total energy + Delta-G solvation = -3724.108963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23828 -39.12057 -37.73362 -34.73481 -34.26700 -33.88319 -32.45495 -31.60524 -29.36126 -28.86932 -27.89580 -26.62429 -24.86811 -24.38191 -22.35121 -21.11062 -20.54935 -19.85890 -19.58184 -17.44363 -16.73506 -16.66402 -16.12260 -15.92749 -15.40501 -14.84478 -14.66835 -14.60516 -14.16505 -14.08000 -13.69085 -13.32806 -13.17078 -12.95567 -12.89136 -12.82143 -12.77189 -12.53520 -12.06390 -11.99934 -11.68194 -11.55249 -11.32671 -11.06965 -11.00606 -10.97591 -10.83308 -10.58706 -10.37398 -10.05614 -9.83260 -9.66660 -9.24111 -8.78323 -8.69658 -8.64220 -8.39942 -6.84571 -5.69120 -3.08839 1.29327 1.36882 2.87147 3.35982 3.40667 3.44217 3.46001 3.78845 4.48386 4.55797 4.61944 4.69815 4.81003 4.94630 5.09208 5.12669 5.15466 5.33750 5.37017 5.38600 5.42628 5.45667 5.49190 5.50060 5.59854 5.66132 5.68186 5.74210 5.88667 5.93831 6.04859 6.08622 6.19397 6.29225 6.39948 6.52974 6.58321 6.63251 6.72385 6.97149 6.99943 7.26212 7.56290 7.71677 7.86456 8.11980 8.31608 8.52638 9.18555 9.79595 10.43109 11.36054 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002787 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.608676 B =10045.360119 C =10668.610447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.071 4.071 6 C -0.118 4.118 7 C -0.059 4.059 8 C -0.105 4.105 9 C 0.510 3.490 10 O -0.534 6.534 11 N -0.710 5.710 12 C 0.144 3.856 13 H 0.098 0.902 14 C 0.132 3.868 15 N -0.596 5.596 16 C -0.216 4.216 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.928 5.928 20 Si 0.917 3.083 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.127 3.873 25 C 0.068 3.932 26 H 0.058 0.942 27 O -0.561 6.561 28 C -0.104 4.104 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.407 0.593 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.252 0.748 43 H 0.115 0.885 44 H 0.022 0.978 45 H 0.379 0.621 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 7.756 -15.177 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.071 4.071 6 C -0.174 4.174 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.295 3.705 10 O -0.410 6.410 11 N -0.362 5.362 12 C 0.038 3.962 13 H 0.116 0.884 14 C 0.005 3.995 15 N -0.323 5.323 16 C -0.344 4.344 17 H 0.095 0.905 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.747 3.253 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.002 3.998 25 C 0.007 3.993 26 H 0.076 0.924 27 O -0.367 6.367 28 C -0.122 4.122 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.242 0.758 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.133 0.867 44 H 0.040 0.960 45 H 0.226 0.774 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.237 8.789 -14.543 22.168 hybrid contribution 1.061 -0.714 0.403 1.341 sum -13.176 8.074 -14.140 20.946 Atomic orbital electron populations 1.20755 0.91392 1.02413 1.02257 1.19807 0.95870 0.93125 1.00759 1.20947 0.94140 0.97312 1.01331 1.20951 0.94134 0.97327 1.01134 1.19700 0.95976 0.92547 0.98890 1.20834 0.91295 1.03412 1.01887 1.19126 0.93281 0.93222 1.00269 1.20699 1.02012 0.96242 0.95492 1.20461 0.78043 0.81117 0.90857 1.90727 1.53583 1.50636 1.46096 1.45866 1.56743 1.23790 1.09811 1.22110 0.97753 0.93402 0.82912 0.88425 1.21579 0.90400 0.92758 0.94717 1.44279 1.16321 1.11135 1.60535 1.19053 0.90940 0.99282 1.25166 0.90491 1.24755 0.99007 0.96248 1.00744 1.69708 1.37534 1.05006 1.45473 0.86112 0.83520 0.76824 0.78831 1.21201 1.21566 1.21161 1.22596 0.91944 0.94196 0.91109 1.23567 0.94925 0.92626 0.88176 0.92432 1.86234 1.80883 1.29982 1.39577 1.20817 0.93235 0.97543 1.00595 0.91296 0.91784 0.91726 0.86383 0.86197 0.91228 0.91416 0.91341 0.87921 0.88234 0.75770 0.95377 0.95518 0.93684 0.86729 0.96044 0.77353 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.10 -1.05 5.88 -104.62 -0.62 -1.67 16 3 C -0.12 -1.29 9.70 -39.59 -0.38 -1.68 16 4 C -0.12 -1.35 9.70 -39.58 -0.38 -1.74 16 5 C -0.07 -0.89 5.88 -104.62 -0.62 -1.51 16 6 C -0.12 -1.34 9.22 36.00 0.33 -1.01 16 7 C -0.06 -0.74 4.37 -104.62 -0.46 -1.20 16 8 C -0.10 -1.18 5.15 -29.03 -0.15 -1.33 16 9 C 0.51 7.83 7.02 -10.98 -0.08 7.75 16 10 O -0.53 -10.39 15.76 5.56 0.09 -10.30 16 11 N -0.71 -10.92 5.09 -52.03 -0.26 -11.19 16 12 C 0.14 2.68 3.12 -66.10 -0.21 2.47 16 13 H 0.10 1.89 7.69 -51.93 -0.40 1.50 16 14 C 0.13 2.98 6.99 -3.06 -0.02 2.96 16 15 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 16 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 17 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 18 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 19 N -0.93 -26.58 10.09 55.49 0.56 -26.02 16 20 Si 0.92 22.19 29.55 -169.99 -5.02 17.16 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.13 2.99 5.62 -2.53 -0.01 2.97 16 25 C 0.07 1.22 4.28 -24.58 -0.11 1.12 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 O -0.56 -9.36 12.23 -35.23 -0.43 -9.79 16 28 C -0.10 -1.23 9.34 -39.58 -0.37 -1.60 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.07 0.89 6.15 -51.92 -0.32 0.57 16 37 H 0.10 0.99 7.01 -51.93 -0.36 0.63 16 38 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 39 H 0.41 5.52 7.57 -40.82 -0.31 5.21 16 40 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.12 2.96 5.88 -51.93 -0.31 2.66 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.38 5.07 9.12 45.56 0.42 5.49 16 46 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -33.72 374.25 -9.27 -42.99 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.30 Total: 9.30 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.96 Total: -1.73 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.28 Total: -53.27 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.34 Total: -20.09 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.72 -9.27 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083750090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.323 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds