Wall clock time and date at job start Fri Apr 10 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 120.00378 * 2 1 4 4 C 1.38207 * 119.99994 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00285 * 359.75434 * 4 3 2 6 6 C 1.50696 * 120.00126 * 180.26982 * 5 4 3 7 7 C 1.38213 * 119.99392 * 0.50413 * 5 4 3 8 8 C 1.50707 * 119.99871 * 179.77005 * 7 5 4 9 9 C 1.50695 * 109.47011 * 84.72375 * 8 7 5 10 10 O 1.21274 * 120.00413 * 0.27295 * 9 8 7 11 11 N 1.34784 * 119.99635 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.64114 * 36.68525 * 12 11 9 14 14 C 1.54326 * 110.72219 * 273.54924 * 12 11 9 15 15 N 1.47018 * 107.26875 * 219.44590 * 14 12 11 16 16 C 1.36938 * 125.64584 * 178.97875 * 15 14 12 17 17 H 1.07996 * 120.00151 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00078 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00344 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46923 * 59.99455 * 20 18 16 22 22 H 1.48497 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46668 * 299.99840 * 20 18 16 24 24 C 1.47421 * 108.70815 * 358.93340 * 15 14 12 25 25 C 1.54915 * 104.82861 * 24.13309 * 24 15 14 26 26 H 1.08996 * 111.00586 * 204.91698 * 25 24 15 27 27 O 1.42898 * 111.00484 * 81.06423 * 25 24 15 28 28 C 1.38214 * 119.99415 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46759 * 270.01961 * 1 2 3 30 30 H 1.08996 * 109.47140 * 30.01342 * 1 2 3 31 31 H 1.08996 * 109.47358 * 150.01802 * 1 2 3 32 32 H 1.08002 * 119.99627 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99969 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47464 * 270.22935 * 6 5 4 35 35 H 1.09001 * 109.47229 * 30.23360 * 6 5 4 36 36 H 1.09008 * 109.46709 * 150.23056 * 6 5 4 37 37 H 1.09005 * 109.46877 * 324.72248 * 8 7 5 38 38 H 1.09002 * 109.46993 * 204.72595 * 8 7 5 39 39 H 0.96999 * 120.00044 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.87612 * 338.85652 * 14 12 11 41 41 H 1.08998 * 109.88722 * 99.86987 * 14 12 11 42 42 H 0.96996 * 120.00189 * 180.02562 * 19 18 16 43 43 H 1.08998 * 110.36698 * 142.96768 * 24 15 14 44 44 H 1.09001 * 110.36976 * 265.29762 * 24 15 14 45 45 H 0.96696 * 114.00075 * 67.80844 * 27 25 24 46 46 H 1.08002 * 120.00725 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0062 6 6 5.7787 -0.0002 0.0129 7 6 3.5806 -1.1971 0.0008 8 6 4.3340 -2.5023 0.0017 9 6 4.6918 -2.8747 1.4174 10 8 4.3628 -2.1541 2.3357 11 7 5.3733 -4.0112 1.6635 12 6 5.7217 -4.3730 3.0397 13 1 4.9222 -4.0917 3.7251 14 6 7.0544 -3.7158 3.4564 15 7 7.7979 -4.7032 4.2524 16 6 9.0413 -4.5176 4.7953 17 1 9.5588 -3.5806 4.6518 18 6 9.6366 -5.5338 5.5300 19 7 9.0058 -6.6756 5.7053 20 14 11.3331 -5.2809 6.2700 21 1 11.2967 -4.1321 7.2103 22 1 11.7415 -6.5066 7.0021 23 1 12.3093 -5.0026 5.1861 24 6 6.9828 -5.9259 4.3703 25 6 6.0335 -5.8892 3.1466 26 1 5.1263 -6.4620 3.3385 27 8 6.6951 -6.3601 1.9708 28 6 2.1980 -1.1970 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6584 2.1326 0.0004 33 1 4.1205 2.1325 0.0010 34 1 6.1466 0.0017 -1.0130 35 1 6.1397 0.8888 0.5301 36 1 6.1396 -0.8913 0.5268 37 1 5.2449 -2.3964 -0.5875 38 1 3.7091 -3.2828 -0.4324 39 1 5.6337 -4.5892 0.9294 40 1 7.6282 -3.4468 2.5695 41 1 6.8579 -2.8261 4.0546 42 1 9.4216 -7.3855 6.2191 43 1 7.6182 -6.8107 4.3310 44 1 6.4083 -5.9111 5.2965 45 1 6.9103 -7.3026 1.9914 46 1 1.6580 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083750090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:57 Heat of formation + Delta-G solvation = -63.905464 kcal Electronic energy + Delta-G solvation = -26747.759836 eV Core-core repulsion = 23022.643056 eV Total energy + Delta-G solvation = -3725.116780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34512 -40.29570 -39.19060 -36.37139 -35.42342 -35.08038 -33.69242 -33.16698 -30.49962 -30.12755 -29.28116 -28.13325 -26.32060 -25.60647 -23.31409 -22.51289 -22.05069 -21.31238 -20.69446 -19.22326 -18.28256 -17.94693 -17.03505 -17.01623 -16.81376 -16.54158 -16.02504 -15.68681 -15.60183 -15.33310 -14.85201 -14.66135 -14.37170 -14.31457 -14.04708 -13.94237 -13.70110 -13.59537 -13.46155 -13.22200 -12.99220 -12.83933 -12.73951 -12.69687 -12.35116 -12.26144 -12.14785 -11.91043 -11.87524 -11.80884 -11.75857 -10.99711 -10.84932 -10.72230 -10.06671 -9.65636 -9.24188 -8.91714 -7.81821 -5.25326 0.42912 0.51598 1.45232 1.48265 1.54560 1.66416 2.16755 2.48337 2.86743 3.21805 3.28956 3.63414 3.68387 3.84892 3.88563 3.95520 4.03223 4.10357 4.14701 4.30713 4.33004 4.37614 4.49099 4.55015 4.64563 4.72290 4.73208 4.77290 4.84785 4.85063 4.85928 4.91308 5.00452 5.13369 5.26054 5.32946 5.38939 5.44529 5.51578 5.55741 5.70394 5.72067 5.76236 6.18081 6.24588 6.64800 6.91588 7.07562 7.32253 7.72004 8.34858 9.20062 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002787 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.608676 B =10045.360119 C =10668.610447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.078 4.078 8 C -0.095 4.095 9 C 0.511 3.489 10 O -0.578 6.578 11 N -0.699 5.699 12 C 0.155 3.845 13 H 0.091 0.909 14 C 0.134 3.866 15 N -0.616 5.616 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.981 3.019 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.126 3.874 25 C 0.092 3.908 26 H 0.094 0.906 27 O -0.561 6.561 28 C -0.118 4.118 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.419 0.581 40 H 0.022 0.978 41 H 0.005 0.995 42 H 0.250 0.750 43 H 0.092 0.908 44 H -0.002 1.002 45 H 0.396 0.604 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.993 7.672 -16.917 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.093 4.093 6 C -0.171 4.171 7 C -0.078 4.078 8 C -0.134 4.134 9 C 0.299 3.701 10 O -0.457 6.457 11 N -0.352 5.352 12 C 0.049 3.951 13 H 0.109 0.891 14 C 0.007 3.993 15 N -0.342 5.342 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.253 4.253 19 N -0.595 5.595 20 Si 0.809 3.191 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.001 3.999 25 C 0.032 3.968 26 H 0.112 0.888 27 O -0.369 6.369 28 C -0.136 4.136 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.257 0.743 40 H 0.040 0.960 41 H 0.023 0.977 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.016 0.984 45 H 0.246 0.754 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.140 8.683 -16.331 23.902 hybrid contribution 1.327 -0.634 0.952 1.752 sum -13.812 8.049 -15.379 22.183 Atomic orbital electron populations 1.20794 0.89454 1.03736 1.02626 1.20209 0.97469 0.92961 0.99943 1.21285 0.94134 0.98365 1.00697 1.21234 0.94799 0.97719 1.01073 1.19959 0.96505 0.93203 0.99648 1.20813 0.91020 1.02375 1.02891 1.19349 0.93887 0.93640 1.00969 1.20716 1.03335 0.96732 0.92607 1.21176 0.76725 0.80047 0.92150 1.90711 1.55240 1.51853 1.47918 1.45725 1.56583 1.24257 1.08634 1.21743 0.95271 0.93449 0.84680 0.89135 1.21613 0.92175 0.91891 0.93614 1.44551 1.16215 1.12747 1.60717 1.19347 0.92307 0.99455 1.26108 0.91003 1.25557 1.02498 0.96062 1.01144 1.69934 1.38636 1.05345 1.45547 0.85126 0.79326 0.76649 0.78046 1.20885 1.21328 1.20306 1.22511 0.92122 0.92406 0.92903 1.23236 0.94689 0.92734 0.86181 0.88806 1.86200 1.80836 1.31694 1.38205 1.21109 0.93259 0.98578 1.00654 0.91264 0.90302 0.90659 0.84289 0.84807 0.89171 0.91479 0.93269 0.86113 0.85093 0.74320 0.95958 0.97724 0.94008 0.89055 0.98383 0.75368 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.11 -2.17 5.88 -19.87 -0.12 -2.28 16 3 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 4 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 5 C -0.09 -2.28 5.88 -19.87 -0.12 -2.39 16 6 C -0.11 -2.56 9.22 71.23 0.66 -1.90 16 7 C -0.08 -1.87 4.37 -19.86 -0.09 -1.96 16 8 C -0.09 -1.95 5.15 29.10 0.15 -1.80 16 9 C 0.51 15.17 7.02 87.65 0.62 15.79 16 10 O -0.58 -22.58 15.76 -3.01 -0.05 -22.63 16 11 N -0.70 -20.47 5.09 -436.92 -2.22 -22.70 16 12 C 0.16 5.72 3.12 46.18 0.14 5.86 16 13 H 0.09 3.51 7.69 -2.39 -0.02 3.49 16 14 C 0.13 6.18 6.99 86.73 0.61 6.78 16 15 N -0.62 -32.76 3.39 -691.99 -2.35 -35.11 16 16 C -0.24 -14.09 10.27 84.03 0.86 -13.22 16 17 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 19 N -0.95 -54.93 10.09 21.65 0.22 -54.71 16 20 Si 0.98 45.92 29.55 68.60 2.03 47.94 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.13 6.00 5.62 86.86 0.49 6.49 16 25 C 0.09 3.21 4.28 31.99 0.14 3.35 16 26 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 27 O -0.56 -17.48 12.23 -148.98 -1.82 -19.30 16 28 C -0.12 -2.63 9.34 22.27 0.21 -2.42 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 31 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 32 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 36 H 0.05 1.27 6.15 -2.38 -0.01 1.26 16 37 H 0.12 2.06 7.01 -2.38 -0.02 2.04 16 38 H 0.13 1.87 8.05 -2.39 -0.02 1.85 16 39 H 0.42 10.30 7.57 -92.71 -0.70 9.60 16 40 H 0.02 1.05 8.03 -2.38 -0.02 1.03 16 41 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.09 4.79 5.88 -2.39 -0.01 4.78 16 44 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.40 9.63 9.12 -74.06 -0.68 8.95 16 46 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -74.61 374.25 0.59 -74.02 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.38 Total: 29.01 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.16 Total: 3.47 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.35 Total: -112.52 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.87 Total: -41.93 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -74.61 0.59 -74.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083750090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.118 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds