Wall clock time and date at job start Fri Apr 10 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46894 * 2 1 4 4 C 1.53000 * 109.47214 * 239.99802 * 2 1 3 5 5 C 1.53000 * 109.46763 * 174.99655 * 4 2 1 6 6 H 1.08994 * 109.47442 * 305.00037 * 5 4 2 7 7 C 1.53004 * 109.47040 * 184.99900 * 5 4 2 8 8 N 1.46504 * 109.47157 * 65.00295 * 5 4 2 9 9 C 1.36932 * 120.00090 * 204.99548 * 8 5 4 10 10 H 1.08006 * 119.99764 * 0.02562 * 9 8 5 11 11 C 1.38804 * 120.00152 * 179.97438 * 9 8 5 12 12 N 1.31621 * 120.00020 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00361 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47129 * 89.99654 * 13 11 9 15 15 H 1.48498 * 109.47500 * 210.00342 * 13 11 9 16 16 H 1.48508 * 109.46948 * 330.00332 * 13 11 9 17 17 N 1.46494 * 109.47274 * 119.99491 * 2 1 3 18 18 C 1.34782 * 120.00228 * 275.00330 * 17 2 1 19 19 O 1.21616 * 119.99703 * 0.02562 * 18 17 2 20 20 C 1.47309 * 119.99823 * 179.97438 * 18 17 2 21 21 C 1.39002 * 120.90897 * 359.71932 * 20 18 17 22 22 C 1.39724 * 119.29374 * 180.27396 * 21 20 18 23 23 C 1.35251 * 121.08064 * 359.97438 * 22 21 20 24 24 N 1.35724 * 121.57324 * 0.02562 * 23 22 21 25 25 N 1.40202 * 134.08957 * 179.97438 * 24 23 22 26 26 N 1.29017 * 106.96086 * 180.02562 * 25 24 23 27 27 N 1.28590 * 110.78855 * 359.97438 * 26 25 24 28 28 C 1.32046 * 110.21084 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.46472 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47242 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.46959 * 60.00513 * 1 2 3 32 32 H 1.08995 * 109.47311 * 294.99751 * 4 2 1 33 33 H 1.09004 * 109.46897 * 54.99984 * 4 2 1 34 34 H 1.08992 * 109.47141 * 180.02562 * 7 5 4 35 35 H 1.09004 * 109.47194 * 300.00878 * 7 5 4 36 36 H 1.09010 * 109.46875 * 59.99993 * 7 5 4 37 37 H 0.96996 * 119.99596 * 24.99810 * 8 5 4 38 38 H 0.97003 * 120.00314 * 179.97438 * 12 11 9 39 39 H 0.96997 * 119.99959 * 95.00111 * 17 2 1 40 40 H 1.08003 * 120.35496 * 0.25852 * 21 20 18 41 41 H 1.08001 * 119.46073 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.21505 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0646 -1.2250 -2.6239 8 7 4.1538 -1.3341 -0.1823 9 6 5.3944 -0.9854 0.2807 10 1 5.9386 -0.1787 -0.1879 11 6 5.9521 -1.6680 1.3529 12 7 5.2887 -2.6508 1.9243 13 14 7.6442 -1.1920 1.9851 14 1 7.5053 -0.1544 3.0383 15 1 8.3148 -2.3885 2.5543 16 1 8.4579 -0.6545 0.8651 17 7 2.0184 -0.6905 1.1962 18 6 2.1471 -0.0180 2.3572 19 8 1.8573 1.1618 2.4118 20 6 2.6376 -0.7126 3.5601 21 6 2.9677 -2.0623 3.5206 22 6 3.4243 -2.6887 4.6831 23 6 3.5499 -2.0033 5.8423 24 7 3.2389 -0.6848 5.9256 25 7 3.2666 0.2605 6.9606 26 7 2.8563 1.3772 6.4615 27 7 2.5703 1.2423 5.2150 28 6 2.7852 -0.0023 4.8298 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.7518 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1370 34 1 5.1509 -1.1484 -2.6696 35 1 3.7724 -2.2741 -2.6699 36 1 3.6264 -0.6886 -3.4657 37 1 3.6649 -2.0583 0.2387 38 1 5.6786 -3.1281 2.6734 39 1 2.2491 -1.6316 1.1527 40 1 2.8720 -2.6209 2.6012 41 1 3.6819 -3.7372 4.6554 42 1 3.9053 -2.5177 6.7229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134456578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:19 Heat of formation + Delta-G solvation = 129.580303 kcal Electronic energy + Delta-G solvation = -27970.749449 eV Core-core repulsion = 24182.775249 eV Total energy + Delta-G solvation = -3787.974200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.83134 -39.46681 -37.94470 -36.85614 -34.36181 -33.53594 -32.47712 -31.50367 -31.02601 -29.65503 -28.72264 -26.44989 -24.97461 -24.02328 -23.75935 -22.99823 -21.21207 -20.43729 -19.91495 -18.30383 -17.51731 -17.07597 -16.87641 -16.37765 -15.73085 -15.34309 -14.97022 -14.42273 -14.13225 -13.97375 -13.66726 -13.28009 -13.08029 -12.89118 -12.60162 -12.42055 -12.26408 -12.08313 -12.01287 -11.90207 -11.79030 -11.76373 -11.22018 -11.02843 -10.94665 -10.78843 -10.51622 -10.48621 -10.44368 -10.11258 -9.98691 -9.73863 -9.32497 -9.23048 -8.48002 -8.14240 -7.23946 -6.19943 -3.30591 0.43152 1.00725 2.08861 2.60149 3.03184 3.25438 3.30082 3.35585 3.58578 4.01884 4.10066 4.32940 4.42791 4.83500 4.97316 5.05563 5.18813 5.21615 5.35201 5.38830 5.56059 5.58610 5.72658 5.76276 5.86658 5.90093 5.94142 6.00951 6.07465 6.11780 6.19166 6.25762 6.34943 6.38922 6.47415 6.50532 6.69033 6.75808 6.88786 7.08045 7.37153 8.01350 8.09494 8.83293 8.85811 9.14108 9.66174 10.01942 11.01792 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.006541 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.092965 B = 4279.896055 C = 5872.759529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.086 0.914 4 C -0.133 4.133 5 C 0.164 3.836 6 H 0.053 0.947 7 C -0.163 4.163 8 N -0.711 5.711 9 C -0.187 4.187 10 H 0.074 0.926 11 C -0.024 4.024 12 N -0.917 5.917 13 Si 0.904 3.096 14 H -0.291 1.291 15 H -0.289 1.289 16 H -0.281 1.281 17 N -0.696 5.696 18 C 0.576 3.424 19 O -0.531 6.531 20 C -0.127 4.127 21 C 0.028 3.972 22 C -0.117 4.117 23 C 0.089 3.911 24 N -0.308 5.308 25 N -0.130 5.130 26 N -0.025 5.025 27 N -0.306 5.306 28 C 0.284 3.716 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.378 0.622 38 H 0.258 0.742 39 H 0.400 0.600 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.244 -5.944 -2.159 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.104 0.896 4 C -0.172 4.172 5 C 0.055 3.945 6 H 0.071 0.929 7 C -0.223 4.223 8 N -0.352 5.352 9 C -0.317 4.317 10 H 0.092 0.908 11 C -0.219 4.219 12 N -0.565 5.565 13 Si 0.735 3.265 14 H -0.219 1.219 15 H -0.216 1.216 16 H -0.207 1.207 17 N -0.350 5.350 18 C 0.362 3.638 19 O -0.408 6.408 20 C -0.139 4.139 21 C -0.001 4.001 22 C -0.140 4.140 23 C -0.038 4.038 24 N -0.089 5.089 25 N -0.114 5.114 26 N -0.019 5.019 27 N -0.165 5.165 28 C 0.026 3.974 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.213 0.787 38 H 0.068 0.932 39 H 0.238 0.762 40 H 0.184 0.816 41 H 0.184 0.816 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.255 -3.749 -1.125 8.244 hybrid contribution 1.477 -1.412 0.100 2.046 sum -5.778 -5.161 -1.025 7.815 Atomic orbital electron populations 1.22210 0.96066 1.01666 1.02198 1.20822 0.92689 0.97825 0.83980 0.89617 1.22216 0.97347 1.00756 0.96879 1.20394 0.90074 0.96075 0.87943 0.92924 1.22385 1.01546 1.00435 0.97903 1.42620 1.18432 1.39549 1.34608 1.19525 0.92421 1.11166 1.08581 0.90847 1.24500 0.99070 0.99207 0.99126 1.69469 1.37552 1.23960 1.25533 0.86191 0.83923 0.77440 0.78949 1.21882 1.21551 1.20691 1.45777 1.66599 1.14075 1.08517 1.17234 0.77894 0.86266 0.82390 1.90815 1.50229 1.14909 1.84868 1.19962 1.10555 0.93331 0.90018 1.21901 0.87389 0.92273 0.98506 1.20963 1.00478 1.01990 0.90578 1.21505 1.00819 0.80003 1.01456 1.48704 1.40990 1.10033 1.09154 1.82613 1.28140 0.92821 1.07802 1.77905 1.05840 1.15280 1.02833 1.75183 1.24807 1.13050 1.03433 1.23625 0.95050 0.88846 0.89852 0.92792 0.92157 0.92057 0.91604 0.90479 0.92829 0.93458 0.94247 0.78654 0.93184 0.76197 0.81605 0.81647 0.81090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 37.16 0.35 -1.66 16 2 C 0.15 2.21 2.57 -67.93 -0.17 2.04 16 3 H 0.09 1.47 7.58 -51.92 -0.39 1.07 16 4 C -0.13 -1.72 4.43 -26.73 -0.12 -1.83 16 5 C 0.16 2.66 2.89 -67.93 -0.20 2.46 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.42 9.49 37.16 0.35 -2.07 16 8 N -0.71 -13.73 3.84 -53.42 -0.21 -13.94 16 9 C -0.19 -4.29 9.93 -15.06 -0.15 -4.44 16 10 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 11 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 12 N -0.92 -20.05 10.79 55.49 0.60 -19.45 16 13 Si 0.90 20.41 29.55 -169.99 -5.02 15.39 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 N -0.70 -11.29 3.75 -54.92 -0.21 -11.49 16 18 C 0.58 11.34 7.74 -12.57 -0.10 11.24 16 19 O -0.53 -12.26 15.94 5.26 0.08 -12.18 16 20 C -0.13 -2.39 6.06 -102.71 -0.62 -3.01 16 21 C 0.03 0.43 8.01 -38.74 -0.31 0.12 16 22 C -0.12 -1.48 9.92 -40.09 -0.40 -1.88 16 23 C 0.09 1.22 11.15 -16.89 -0.19 1.03 16 24 N -0.31 -5.61 3.94 -10.99 -0.04 -5.66 16 25 N -0.13 -2.57 13.99 60.35 0.84 -1.72 16 26 N -0.03 -0.55 13.36 60.35 0.81 0.26 16 27 N -0.31 -7.01 11.75 32.20 0.38 -6.63 16 28 C 0.28 5.88 7.85 -154.52 -1.21 4.67 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.38 7.20 5.70 -40.82 -0.23 6.97 16 38 H 0.26 5.58 8.31 -40.82 -0.34 5.24 16 39 H 0.40 6.06 4.61 -40.82 -0.19 5.87 16 40 H 0.17 2.41 5.92 -52.48 -0.31 2.10 16 41 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 42 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -29.47 352.55 -5.63 -35.10 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.32 Total: 9.02 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.86 Total: 5.99 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 2.17 Total: -58.63 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.18 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.47 -5.63 -35.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134456578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.678 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds