Wall clock time and date at job start Fri Apr 10 2020 18:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46894 * 2 1 4 4 C 1.53000 * 109.47214 * 239.99802 * 2 1 3 5 5 C 1.53000 * 109.46763 * 174.99655 * 4 2 1 6 6 H 1.08994 * 109.47442 * 305.00037 * 5 4 2 7 7 C 1.53004 * 109.47040 * 184.99900 * 5 4 2 8 8 N 1.46504 * 109.47157 * 65.00295 * 5 4 2 9 9 C 1.36932 * 120.00090 * 204.99548 * 8 5 4 10 10 H 1.08006 * 119.99764 * 0.02562 * 9 8 5 11 11 C 1.38804 * 120.00152 * 179.97438 * 9 8 5 12 12 N 1.31621 * 120.00020 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00361 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47129 * 89.99654 * 13 11 9 15 15 H 1.48498 * 109.47500 * 210.00342 * 13 11 9 16 16 H 1.48508 * 109.46948 * 330.00332 * 13 11 9 17 17 N 1.46494 * 109.47274 * 119.99491 * 2 1 3 18 18 C 1.34782 * 120.00228 * 275.00330 * 17 2 1 19 19 O 1.21616 * 119.99703 * 0.02562 * 18 17 2 20 20 C 1.47309 * 119.99823 * 179.97438 * 18 17 2 21 21 C 1.39002 * 120.90897 * 359.71932 * 20 18 17 22 22 C 1.39724 * 119.29374 * 180.27396 * 21 20 18 23 23 C 1.35251 * 121.08064 * 359.97438 * 22 21 20 24 24 N 1.35724 * 121.57324 * 0.02562 * 23 22 21 25 25 N 1.40202 * 134.08957 * 179.97438 * 24 23 22 26 26 N 1.29017 * 106.96086 * 180.02562 * 25 24 23 27 27 N 1.28590 * 110.78855 * 359.97438 * 26 25 24 28 28 C 1.32046 * 110.21084 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.46472 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47242 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.46959 * 60.00513 * 1 2 3 32 32 H 1.08995 * 109.47311 * 294.99751 * 4 2 1 33 33 H 1.09004 * 109.46897 * 54.99984 * 4 2 1 34 34 H 1.08992 * 109.47141 * 180.02562 * 7 5 4 35 35 H 1.09004 * 109.47194 * 300.00878 * 7 5 4 36 36 H 1.09010 * 109.46875 * 59.99993 * 7 5 4 37 37 H 0.96996 * 119.99596 * 24.99810 * 8 5 4 38 38 H 0.97003 * 120.00314 * 179.97438 * 12 11 9 39 39 H 0.96997 * 119.99959 * 95.00111 * 17 2 1 40 40 H 1.08003 * 120.35496 * 0.25852 * 21 20 18 41 41 H 1.08001 * 119.46073 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.21505 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0646 -1.2250 -2.6239 8 7 4.1538 -1.3341 -0.1823 9 6 5.3944 -0.9854 0.2807 10 1 5.9386 -0.1787 -0.1879 11 6 5.9521 -1.6680 1.3529 12 7 5.2887 -2.6508 1.9243 13 14 7.6442 -1.1920 1.9851 14 1 7.5053 -0.1544 3.0383 15 1 8.3148 -2.3885 2.5543 16 1 8.4579 -0.6545 0.8651 17 7 2.0184 -0.6905 1.1962 18 6 2.1471 -0.0180 2.3572 19 8 1.8573 1.1618 2.4118 20 6 2.6376 -0.7126 3.5601 21 6 2.9677 -2.0623 3.5206 22 6 3.4243 -2.6887 4.6831 23 6 3.5499 -2.0033 5.8423 24 7 3.2389 -0.6848 5.9256 25 7 3.2666 0.2605 6.9606 26 7 2.8563 1.3772 6.4615 27 7 2.5703 1.2423 5.2150 28 6 2.7852 -0.0023 4.8298 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.7518 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1370 34 1 5.1509 -1.1484 -2.6696 35 1 3.7724 -2.2741 -2.6699 36 1 3.6264 -0.6886 -3.4657 37 1 3.6649 -2.0583 0.2387 38 1 5.6786 -3.1281 2.6734 39 1 2.2491 -1.6316 1.1527 40 1 2.8720 -2.6209 2.6012 41 1 3.6819 -3.7372 4.6554 42 1 3.9053 -2.5177 6.7229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134456578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:18 Heat of formation + Delta-G solvation = 110.286255 kcal Electronic energy + Delta-G solvation = -27971.586101 eV Core-core repulsion = 24182.775249 eV Total energy + Delta-G solvation = -3788.810852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.35485 -40.90791 -39.32333 -38.25226 -35.78958 -35.02981 -33.97780 -32.96070 -32.40246 -31.05729 -30.09746 -27.55656 -26.36573 -25.58326 -25.19498 -24.51126 -22.52177 -21.73457 -21.27651 -19.74894 -19.12434 -18.44823 -18.29125 -17.91013 -17.05702 -16.66830 -16.45278 -15.87820 -15.60994 -15.43876 -15.16678 -14.70998 -14.35035 -14.21583 -14.02608 -13.74664 -13.61503 -13.54833 -13.31141 -13.21165 -13.05312 -12.93138 -12.75878 -12.59153 -12.39971 -12.22420 -12.15601 -12.08303 -11.67066 -11.59866 -11.37752 -11.13090 -10.88390 -10.83801 -9.90844 -9.53086 -8.77264 -7.88759 -5.01853 -0.87754 -0.42119 0.69870 1.05565 1.40880 1.46047 1.51981 1.66857 2.21822 2.56074 2.58823 2.66900 3.02711 3.47527 3.62326 3.76638 3.82402 3.92784 4.06301 4.17837 4.22571 4.35886 4.42358 4.56497 4.62510 4.71064 4.79218 4.89036 4.93362 4.94810 4.98018 5.13878 5.16301 5.19993 5.23911 5.42886 5.46832 5.47598 5.63174 5.67419 5.78508 6.40884 6.70268 7.26197 7.40390 7.49034 8.14555 8.47343 9.34142 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.006541 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.092965 B = 4279.896055 C = 5872.759529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.052 0.948 4 C -0.118 4.118 5 C 0.159 3.841 6 H 0.025 0.975 7 C -0.153 4.153 8 N -0.713 5.713 9 C -0.213 4.213 10 H 0.048 0.952 11 C -0.038 4.038 12 N -0.920 5.920 13 Si 0.924 3.076 14 H -0.321 1.321 15 H -0.284 1.284 16 H -0.291 1.291 17 N -0.680 5.680 18 C 0.568 3.432 19 O -0.576 6.576 20 C -0.151 4.151 21 C 0.058 3.942 22 C -0.109 4.109 23 C 0.102 3.898 24 N -0.307 5.307 25 N -0.130 5.130 26 N -0.042 5.042 27 N -0.348 5.348 28 C 0.259 3.741 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.026 0.974 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.380 0.620 38 H 0.259 0.741 39 H 0.407 0.593 40 H 0.181 0.819 41 H 0.219 0.781 42 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 -9.399 -2.269 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.071 0.929 4 C -0.156 4.156 5 C 0.051 3.949 6 H 0.043 0.957 7 C -0.212 4.212 8 N -0.356 5.356 9 C -0.345 4.345 10 H 0.066 0.934 11 C -0.233 4.233 12 N -0.570 5.570 13 Si 0.759 3.241 14 H -0.251 1.251 15 H -0.210 1.210 16 H -0.217 1.217 17 N -0.332 5.332 18 C 0.355 3.645 19 O -0.457 6.457 20 C -0.161 4.161 21 C 0.031 3.969 22 C -0.131 4.131 23 C -0.024 4.024 24 N -0.087 5.087 25 N -0.113 5.113 26 N -0.035 5.035 27 N -0.207 5.207 28 C 0.002 3.998 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.215 0.785 38 H 0.069 0.931 39 H 0.247 0.753 40 H 0.198 0.802 41 H 0.236 0.764 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.610 -7.244 -1.207 11.316 hybrid contribution 1.795 -0.408 0.337 1.871 sum -6.814 -7.651 -0.869 10.283 Atomic orbital electron populations 1.22115 0.93780 1.03055 1.02149 1.20980 0.94378 0.96292 0.84104 0.92921 1.22131 0.94552 1.02008 0.96909 1.20519 0.92309 0.94348 0.87740 0.95701 1.22248 0.99944 1.01088 0.97954 1.42462 1.17419 1.39991 1.35695 1.19298 0.94252 1.11426 1.09534 0.93407 1.24614 0.99158 0.99845 0.99662 1.69420 1.37292 1.24068 1.26178 0.85925 0.84351 0.76375 0.77487 1.25100 1.20962 1.21718 1.45755 1.65235 1.14188 1.08054 1.17560 0.77513 0.85942 0.83528 1.90788 1.52386 1.16853 1.85675 1.20183 1.11954 0.94688 0.89291 1.22338 0.83696 0.90590 1.00279 1.21626 0.98612 1.04120 0.88780 1.22671 0.97838 0.78058 1.03784 1.48944 1.40465 1.11267 1.08017 1.82471 1.27924 0.92800 1.08140 1.77849 1.06667 1.16256 1.02773 1.75066 1.26478 1.15067 1.04105 1.23811 0.96041 0.88836 0.91067 0.90569 0.94701 0.89671 0.89512 0.87378 0.95425 0.92712 0.91567 0.78505 0.93098 0.75338 0.80172 0.76417 0.76039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.48 71.98 0.68 -2.79 16 2 C 0.15 4.15 2.57 44.99 0.12 4.27 16 3 H 0.05 1.86 7.58 -2.38 -0.02 1.85 16 4 C -0.12 -2.73 4.43 30.59 0.14 -2.59 16 5 C 0.16 5.05 2.89 44.99 0.13 5.18 16 6 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 7 C -0.15 -4.32 9.49 71.98 0.68 -3.64 16 8 N -0.71 -27.32 3.84 -322.94 -1.24 -28.57 16 9 C -0.21 -10.01 9.93 84.03 0.83 -9.17 16 10 H 0.05 2.42 7.83 -2.91 -0.02 2.40 16 11 C -0.04 -1.78 5.50 84.86 0.47 -1.31 16 12 N -0.92 -38.47 10.79 21.65 0.23 -38.23 16 13 Si 0.92 42.19 29.55 68.60 2.03 44.22 16 14 H -0.32 -16.10 7.11 99.48 0.71 -15.39 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 17 N -0.68 -21.58 3.75 -445.90 -1.67 -23.25 16 18 C 0.57 22.69 7.74 86.63 0.67 23.36 16 19 O -0.58 -27.88 15.94 -4.08 -0.07 -27.94 16 20 C -0.15 -5.56 6.06 -18.63 -0.11 -5.67 16 21 C 0.06 1.59 8.01 22.81 0.18 1.78 16 22 C -0.11 -2.20 9.92 21.94 0.22 -1.98 16 23 C 0.10 2.31 11.15 83.40 0.93 3.24 16 24 N -0.31 -10.59 3.94 -188.68 -0.74 -11.33 16 25 N -0.13 -5.01 13.99 37.02 0.52 -4.49 16 26 N -0.04 -1.87 13.36 37.02 0.49 -1.38 16 27 N -0.35 -16.40 11.75 -52.04 -0.61 -17.02 16 28 C 0.26 10.70 7.85 135.76 1.07 11.76 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.38 13.86 5.70 -92.71 -0.53 13.34 16 38 H 0.26 10.44 8.31 -92.71 -0.77 9.67 16 39 H 0.41 11.55 4.61 -92.71 -0.43 11.12 16 40 H 0.18 4.55 5.92 -2.91 -0.02 4.53 16 41 H 0.22 2.31 8.06 -2.91 -0.02 2.29 16 42 H 0.22 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -70.56 352.55 5.05 -65.51 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.11 Total: 20.05 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 6.00 Total: 22.44 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -3.02 Total: -124.27 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.07 Total: -27.94 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -70.56 5.05 -65.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134456578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.797 kcal (2) G-P(sol) polarization free energy of solvation -70.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds