Wall clock time and date at job start Fri Apr 10 2020 18:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 H 1.08997 * 109.47184 * 304.99763 * 5 4 2 7 7 C 1.53004 * 109.47006 * 185.00314 * 5 4 2 8 8 N 1.46503 * 109.46950 * 65.00161 * 5 4 2 9 9 C 1.34777 * 119.99650 * 204.99748 * 8 5 4 10 10 O 1.21515 * 120.00323 * 0.02562 * 9 8 5 11 11 C 1.48123 * 119.99411 * 180.02562 * 9 8 5 12 12 C 1.39815 * 119.37004 * 180.02562 * 11 9 8 13 13 C 1.36968 * 119.60604 * 179.97438 * 12 11 9 14 14 C 1.39813 * 118.25651 * 359.97438 * 13 12 11 15 15 N 1.34651 * 135.01254 * 180.02562 * 14 13 12 16 16 N 1.28668 * 109.16271 * 179.97438 * 15 14 13 17 17 N 1.28763 * 111.84577 * 0.02562 * 16 15 14 18 18 H 0.97008 * 125.85883 * 180.02562 * 17 16 15 19 19 C 1.37251 * 108.28312 * 359.97438 * 17 16 15 20 20 N 1.31956 * 134.70542 * 180.35830 * 19 17 16 21 21 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 22 22 C 1.36940 * 120.00276 * 274.99870 * 21 2 1 23 23 H 1.08002 * 119.99359 * 0.02562 * 22 21 2 24 24 C 1.38803 * 120.00232 * 180.02562 * 22 21 2 25 25 N 1.31619 * 120.00338 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99991 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47288 * 59.99896 * 26 24 22 28 28 H 1.48501 * 109.46947 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46912 * 300.00063 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09000 * 109.46797 * 180.02562 * 7 5 4 36 36 H 1.09006 * 109.46751 * 299.99598 * 7 5 4 37 37 H 1.08995 * 109.47371 * 60.00309 * 7 5 4 38 38 H 0.96994 * 119.99716 * 25.00238 * 8 5 4 39 39 H 1.08002 * 120.19669 * 359.96970 * 12 11 9 40 40 H 1.08001 * 120.87290 * 180.02562 * 13 12 11 41 41 H 0.97003 * 119.99825 * 95.00368 * 21 2 1 42 42 H 0.96996 * 120.00427 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 1 3.8571 0.4360 -1.2678 7 6 4.0646 -1.2247 -2.6241 8 7 4.1538 -1.3341 -0.1824 9 6 5.3749 -0.9909 0.2733 10 8 5.9872 -0.0832 -0.2539 11 6 5.9704 -1.7202 1.4167 12 6 7.2378 -1.3530 1.8791 13 6 7.7928 -2.0238 2.9364 14 6 7.0605 -3.0624 3.5194 15 7 7.2675 -3.9187 4.5377 16 7 6.2448 -4.6907 4.6548 17 7 5.3396 -4.4231 3.7790 18 1 4.4883 -4.8784 3.6842 19 6 5.7854 -3.3821 3.0034 20 7 5.2894 -2.7040 1.9859 21 7 2.0184 -0.6906 1.1961 22 6 2.1492 -0.0076 2.3758 23 1 1.8919 1.0402 2.4243 24 6 2.6123 -0.6619 3.5089 25 7 2.9263 -1.9387 3.4496 26 14 2.7901 0.2698 5.1183 27 1 1.4673 0.8056 5.5288 28 1 3.3003 -0.6484 6.1680 29 1 3.7445 1.3930 4.9372 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6055 -0.2616 -2.1370 35 1 5.1509 -1.1481 -2.6698 36 1 3.7724 -2.2739 -2.6700 37 1 3.6265 -0.6883 -3.4658 38 1 3.6649 -2.0584 0.2385 39 1 7.7759 -0.5453 1.4054 40 1 8.7702 -1.7570 3.3106 41 1 2.2491 -1.6318 1.1525 42 1 3.2503 -2.3958 4.2414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134553343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:24 Heat of formation + Delta-G solvation = 107.274921 kcal Electronic energy + Delta-G solvation = -27980.032140 eV Core-core repulsion = 24191.090706 eV Total energy + Delta-G solvation = -3788.941434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.97185 -39.77466 -38.15336 -36.73443 -34.26471 -33.88308 -32.35346 -31.51792 -30.95539 -29.98265 -28.56332 -26.38811 -25.34205 -23.71582 -23.57886 -22.33788 -21.51233 -20.28725 -19.88565 -18.47288 -18.08069 -17.37168 -17.21176 -16.18249 -15.84001 -15.07288 -14.77373 -14.55135 -14.20101 -13.87871 -13.65841 -13.14954 -13.13607 -12.93545 -12.77134 -12.41355 -12.15217 -12.06015 -11.91541 -11.78751 -11.69856 -11.45716 -11.28683 -11.05483 -10.89290 -10.78902 -10.42544 -10.33426 -9.97537 -9.81565 -9.71692 -9.03908 -9.01342 -8.87644 -8.67003 -8.38966 -6.98266 -5.84921 -3.07069 0.52054 1.34795 2.46383 2.60191 3.22431 3.36627 3.40993 3.44563 3.62311 4.09705 4.24390 4.51852 4.60976 4.74729 5.03433 5.12298 5.16220 5.37442 5.47766 5.50542 5.63256 5.64739 5.80321 5.85372 5.93588 5.96847 6.02969 6.10525 6.18131 6.21283 6.32239 6.37392 6.51069 6.56331 6.59549 6.81243 6.96419 7.01071 7.10111 7.63029 7.83756 8.18331 8.30319 8.45516 8.76253 9.43791 9.99431 10.35000 11.32661 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.006486 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.347548 B = 4315.729284 C = 5737.970642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.048 0.952 4 C -0.133 4.133 5 C 0.147 3.853 6 H 0.085 0.915 7 C -0.162 4.162 8 N -0.673 5.673 9 C 0.584 3.416 10 O -0.553 6.553 11 C 0.143 3.857 12 C -0.124 4.124 13 C -0.024 4.024 14 C -0.036 4.036 15 N -0.254 5.254 16 N -0.008 5.008 17 N -0.392 5.392 18 H 0.459 0.541 19 C 0.242 3.758 20 N -0.379 5.379 21 N -0.713 5.713 22 C -0.221 4.221 23 H 0.066 0.934 24 C -0.008 4.008 25 N -0.906 5.906 26 Si 0.891 3.109 27 H -0.287 1.287 28 H -0.295 1.295 29 H -0.288 1.288 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.381 0.619 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -3.200 -8.335 9.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.042 3.958 6 H 0.104 0.896 7 C -0.221 4.221 8 N -0.325 5.325 9 C 0.368 3.632 10 O -0.431 6.431 11 C -0.013 4.013 12 C -0.148 4.148 13 C -0.055 4.055 14 C -0.164 4.164 15 N -0.130 5.130 16 N 0.009 4.991 17 N -0.123 5.123 18 H 0.307 0.693 19 C -0.003 4.003 20 N -0.094 5.094 21 N -0.356 5.356 22 C -0.353 4.353 23 H 0.084 0.916 24 C -0.204 4.204 25 N -0.555 5.555 26 Si 0.723 3.277 27 H -0.214 1.214 28 H -0.221 1.221 29 H -0.215 1.215 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.255 0.745 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.216 0.784 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.430 -3.600 -7.650 9.124 hybrid contribution -0.452 0.518 0.941 1.165 sum 2.978 -3.082 -6.709 7.961 Atomic orbital electron populations 1.22413 0.99274 1.00695 0.99917 1.20305 0.91729 0.95762 0.86424 0.93379 1.22213 0.93823 1.01705 0.99456 1.20897 0.92672 0.97376 0.84859 0.89645 1.22208 1.01849 1.00903 0.97124 1.45854 1.17052 1.37005 1.32618 1.17525 0.81787 0.82426 0.81435 1.90716 1.62563 1.30591 1.59192 1.21064 0.91381 0.93257 0.95586 1.21625 0.95707 1.00699 0.96782 1.20267 0.99698 0.91638 0.93876 1.20630 0.96591 1.00879 0.98301 1.75274 1.16498 1.04952 1.16306 1.77971 0.94058 1.18396 1.08692 1.44559 1.18542 1.26202 1.22971 0.69308 1.19601 0.91512 0.93318 0.95908 1.66314 1.31493 1.04924 1.06652 1.42485 1.77538 1.10337 1.05281 1.19117 1.35308 0.93675 0.87176 0.91642 1.24520 1.02605 0.96016 0.97270 1.69683 1.50164 1.08071 1.27538 0.86505 0.77779 0.79020 0.84407 1.21419 1.22103 1.21466 0.93638 0.92918 0.94578 0.91695 0.90676 0.92279 0.92750 0.91979 0.74531 0.82630 0.83396 0.78388 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.49 37.16 0.35 -2.31 16 2 C 0.17 2.95 2.89 -67.93 -0.20 2.76 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.87 4.43 -26.73 -0.12 -1.99 16 5 C 0.15 2.21 2.57 -67.93 -0.17 2.04 16 6 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 7 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 8 N -0.67 -11.66 3.79 -54.66 -0.21 -11.87 16 9 C 0.58 11.09 7.77 -12.20 -0.09 10.99 16 10 O -0.55 -11.22 15.95 5.35 0.09 -11.13 16 11 C 0.14 2.66 6.74 -82.93 -0.56 2.10 16 12 C -0.12 -2.01 9.55 -39.45 -0.38 -2.38 16 13 C -0.02 -0.37 10.16 -39.45 -0.40 -0.77 16 14 C -0.04 -0.63 7.38 -84.91 -0.63 -1.26 16 15 N -0.25 -4.56 12.43 32.12 0.40 -4.16 16 16 N -0.01 -0.13 13.28 60.35 0.80 0.67 16 17 N -0.39 -6.39 7.06 31.13 0.22 -6.17 16 18 H 0.46 6.34 8.96 -190.26 -1.71 4.63 16 19 C 0.24 4.43 8.49 -156.28 -1.33 3.10 16 20 N -0.38 -7.17 8.49 -8.90 -0.08 -7.25 16 21 N -0.71 -15.29 3.84 -53.43 -0.21 -15.50 16 22 C -0.22 -5.55 9.93 -15.06 -0.15 -5.69 16 23 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 25 N -0.91 -22.80 11.94 55.49 0.66 -22.13 16 26 Si 0.89 21.89 29.55 -169.99 -5.02 16.87 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.41 7.50 5.82 -40.82 -0.24 7.27 16 39 H 0.16 2.22 7.61 -52.49 -0.40 1.82 16 40 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.38 8.41 5.70 -40.82 -0.23 8.18 16 42 H 0.24 6.26 8.31 -40.82 -0.34 5.92 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -28.54 355.13 -8.15 -36.68 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -6.74 Total: 14.03 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -3.42 Total: 4.61 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: 1.59 Total: -66.41 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.54 -8.15 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134553343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.958 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds