Wall clock time and date at job start Fri Apr 10 2020 18:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 H 1.08997 * 109.47184 * 304.99763 * 5 4 2 7 7 C 1.53004 * 109.47006 * 185.00314 * 5 4 2 8 8 N 1.46503 * 109.46950 * 65.00161 * 5 4 2 9 9 C 1.34777 * 119.99650 * 204.99748 * 8 5 4 10 10 O 1.21515 * 120.00323 * 0.02562 * 9 8 5 11 11 C 1.48123 * 119.99411 * 180.02562 * 9 8 5 12 12 C 1.39815 * 119.37004 * 180.02562 * 11 9 8 13 13 C 1.36968 * 119.60604 * 179.97438 * 12 11 9 14 14 C 1.39813 * 118.25651 * 359.97438 * 13 12 11 15 15 N 1.34651 * 135.01254 * 180.02562 * 14 13 12 16 16 N 1.28668 * 109.16271 * 179.97438 * 15 14 13 17 17 N 1.28763 * 111.84577 * 0.02562 * 16 15 14 18 18 H 0.97008 * 125.85883 * 180.02562 * 17 16 15 19 19 C 1.37251 * 108.28312 * 359.97438 * 17 16 15 20 20 N 1.31956 * 134.70542 * 180.35830 * 19 17 16 21 21 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 22 22 C 1.36940 * 120.00276 * 274.99870 * 21 2 1 23 23 H 1.08002 * 119.99359 * 0.02562 * 22 21 2 24 24 C 1.38803 * 120.00232 * 180.02562 * 22 21 2 25 25 N 1.31619 * 120.00338 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99991 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47288 * 59.99896 * 26 24 22 28 28 H 1.48501 * 109.46947 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46912 * 300.00063 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09000 * 109.46797 * 180.02562 * 7 5 4 36 36 H 1.09006 * 109.46751 * 299.99598 * 7 5 4 37 37 H 1.08995 * 109.47371 * 60.00309 * 7 5 4 38 38 H 0.96994 * 119.99716 * 25.00238 * 8 5 4 39 39 H 1.08002 * 120.19669 * 359.96970 * 12 11 9 40 40 H 1.08001 * 120.87290 * 180.02562 * 13 12 11 41 41 H 0.97003 * 119.99825 * 95.00368 * 21 2 1 42 42 H 0.96996 * 120.00427 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 1 3.8571 0.4360 -1.2678 7 6 4.0646 -1.2247 -2.6241 8 7 4.1538 -1.3341 -0.1824 9 6 5.3749 -0.9909 0.2733 10 8 5.9872 -0.0832 -0.2539 11 6 5.9704 -1.7202 1.4167 12 6 7.2378 -1.3530 1.8791 13 6 7.7928 -2.0238 2.9364 14 6 7.0605 -3.0624 3.5194 15 7 7.2675 -3.9187 4.5377 16 7 6.2448 -4.6907 4.6548 17 7 5.3396 -4.4231 3.7790 18 1 4.4883 -4.8784 3.6842 19 6 5.7854 -3.3821 3.0034 20 7 5.2894 -2.7040 1.9859 21 7 2.0184 -0.6906 1.1961 22 6 2.1492 -0.0076 2.3758 23 1 1.8919 1.0402 2.4243 24 6 2.6123 -0.6619 3.5089 25 7 2.9263 -1.9387 3.4496 26 14 2.7901 0.2698 5.1183 27 1 1.4673 0.8056 5.5288 28 1 3.3003 -0.6484 6.1680 29 1 3.7445 1.3930 4.9372 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6055 -0.2616 -2.1370 35 1 5.1509 -1.1481 -2.6698 36 1 3.7724 -2.2739 -2.6700 37 1 3.6265 -0.6883 -3.4658 38 1 3.6649 -2.0584 0.2385 39 1 7.7759 -0.5453 1.4054 40 1 8.7702 -1.7570 3.3106 41 1 2.2491 -1.6318 1.1525 42 1 3.2503 -2.3958 4.2414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134553343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:24 Heat of formation + Delta-G solvation = 88.794843 kcal Electronic energy + Delta-G solvation = -27980.833496 eV Core-core repulsion = 24191.090706 eV Total energy + Delta-G solvation = -3789.742790 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.32786 -41.16988 -39.50285 -38.18155 -35.77896 -35.24042 -33.98907 -32.89280 -32.33518 -31.36114 -30.13335 -27.56884 -26.70454 -25.51938 -24.91019 -23.69783 -22.82050 -21.64443 -21.29071 -19.81204 -19.42994 -19.06595 -18.71285 -17.55173 -17.19063 -16.67389 -16.27543 -15.98098 -15.63987 -15.48866 -15.24155 -14.43488 -14.39811 -14.21331 -14.19351 -13.79746 -13.54019 -13.43148 -13.29562 -13.14337 -12.90834 -12.82505 -12.77149 -12.65443 -12.61496 -12.26221 -12.20435 -11.68716 -11.56859 -11.38424 -11.24108 -10.84937 -10.41039 -10.22917 -10.03733 -9.76797 -8.75088 -7.79302 -4.99027 -0.82420 0.02510 1.09280 1.27654 1.37021 1.40493 1.42821 1.81989 2.29341 2.56743 2.77150 2.86068 3.26722 3.41854 3.51794 3.75533 3.85419 3.92117 4.10003 4.22196 4.37562 4.42892 4.47942 4.61383 4.73751 4.81437 4.87643 4.89060 4.91492 4.97606 5.12396 5.17821 5.19640 5.32059 5.42040 5.45632 5.63024 5.65253 5.69311 5.79063 6.37590 6.45702 6.77270 7.08490 7.33100 7.49802 8.24089 8.51657 9.36195 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.006486 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.347548 B = 4315.729284 C = 5737.970642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.120 4.120 5 C 0.142 3.858 6 H 0.065 0.935 7 C -0.152 4.152 8 N -0.669 5.669 9 C 0.576 3.424 10 O -0.572 6.572 11 C 0.127 3.873 12 C -0.126 4.126 13 C -0.010 4.010 14 C -0.047 4.047 15 N -0.265 5.265 16 N -0.004 5.004 17 N -0.381 5.381 18 H 0.467 0.533 19 C 0.222 3.778 20 N -0.392 5.392 21 N -0.716 5.716 22 C -0.225 4.225 23 H 0.052 0.948 24 C -0.039 4.039 25 N -0.905 5.905 26 Si 0.921 3.079 27 H -0.289 1.289 28 H -0.308 1.308 29 H -0.297 1.297 30 H 0.046 0.954 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.412 0.588 39 H 0.175 0.825 40 H 0.187 0.813 41 H 0.377 0.623 42 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -3.472 -9.877 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.049 0.951 4 C -0.158 4.158 5 C 0.038 3.962 6 H 0.083 0.917 7 C -0.210 4.210 8 N -0.319 5.319 9 C 0.361 3.639 10 O -0.452 6.452 11 C -0.029 4.029 12 C -0.150 4.150 13 C -0.040 4.040 14 C -0.175 4.175 15 N -0.141 5.141 16 N 0.013 4.987 17 N -0.114 5.114 18 H 0.317 0.683 19 C -0.023 4.023 20 N -0.107 5.107 21 N -0.359 5.359 22 C -0.358 4.358 23 H 0.070 0.930 24 C -0.235 4.235 25 N -0.555 5.555 26 Si 0.755 3.245 27 H -0.216 1.216 28 H -0.235 1.235 29 H -0.225 1.225 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.251 0.749 39 H 0.192 0.808 40 H 0.205 0.795 41 H 0.212 0.788 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.501 -3.874 -9.222 10.597 hybrid contribution -0.443 0.599 1.396 1.583 sum 3.058 -3.274 -7.826 9.017 Atomic orbital electron populations 1.22270 0.97905 1.00851 1.00281 1.20504 0.92591 0.95035 0.86629 0.95086 1.22130 0.92867 1.02014 0.98784 1.21080 0.93413 0.96289 0.85431 0.91702 1.22112 1.00948 1.01742 0.96214 1.45956 1.16479 1.36620 1.32892 1.17724 0.82260 0.82341 0.81584 1.90692 1.63160 1.31457 1.59919 1.21302 0.92432 0.93369 0.95792 1.21854 0.94977 1.01164 0.96994 1.20713 1.00755 0.89938 0.92633 1.21027 0.96782 1.01431 0.98288 1.75261 1.16863 1.05359 1.16665 1.77922 0.94051 1.18176 1.08584 1.44584 1.18739 1.25710 1.22350 0.68255 1.19819 0.92161 0.93967 0.96353 1.66247 1.31953 1.05330 1.07131 1.42480 1.77929 1.10058 1.05446 1.19107 1.34879 0.93215 0.88574 0.93041 1.24803 1.03855 0.96688 0.98146 1.69730 1.51098 1.07761 1.26870 0.86033 0.77162 0.77881 0.83393 1.21558 1.23522 1.22501 0.93509 0.95457 0.91307 0.90798 0.87125 0.93740 0.91619 0.89317 0.74939 0.80800 0.79547 0.78793 0.95426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.49 71.98 0.68 -4.05 16 2 C 0.16 5.47 2.89 44.99 0.13 5.60 16 3 H 0.03 1.16 8.08 -2.39 -0.02 1.15 16 4 C -0.12 -3.04 4.43 30.59 0.14 -2.90 16 5 C 0.14 4.05 2.57 44.99 0.12 4.17 16 6 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 7 C -0.15 -3.39 9.48 71.98 0.68 -2.71 16 8 N -0.67 -22.79 3.79 -445.13 -1.69 -24.47 16 9 C 0.58 21.78 7.77 86.87 0.68 22.46 16 10 O -0.57 -23.13 15.95 -3.76 -0.06 -23.19 16 11 C 0.13 4.65 6.74 42.05 0.28 4.94 16 12 C -0.13 -3.91 9.55 22.35 0.21 -3.70 16 13 C -0.01 -0.28 10.16 22.35 0.23 -0.06 16 14 C -0.05 -1.63 7.38 39.83 0.29 -1.33 16 15 N -0.26 -9.23 12.43 -52.29 -0.65 -9.88 16 16 N 0.00 -0.13 13.28 37.02 0.49 0.36 16 17 N -0.38 -12.27 7.06 -55.42 -0.39 -12.66 16 18 H 0.47 12.80 8.96 -219.83 -1.97 10.83 16 19 C 0.22 8.04 8.49 134.30 1.14 9.18 16 20 N -0.39 -14.75 8.49 -182.09 -1.55 -16.30 16 21 N -0.72 -30.53 3.84 -322.95 -1.24 -31.78 16 22 C -0.22 -11.39 9.93 84.03 0.83 -10.55 16 23 H 0.05 2.70 7.83 -2.91 -0.02 2.68 16 24 C -0.04 -2.05 5.50 84.86 0.47 -1.58 16 25 N -0.91 -45.74 11.94 21.65 0.26 -45.48 16 26 Si 0.92 45.44 29.55 68.60 2.03 47.46 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 28 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 29 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.41 14.69 5.82 -92.71 -0.54 14.16 16 39 H 0.17 4.67 7.61 -2.91 -0.02 4.65 16 40 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 41 H 0.38 16.54 5.70 -92.71 -0.53 16.01 16 42 H 0.24 12.17 8.31 -92.71 -0.77 11.40 16 Total: -1.00 -61.81 355.13 1.14 -60.68 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -1.95 Total: 35.81 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 5.88 Total: 19.46 kcal Atomic # 7 Polarization: -135.45 SS G_CDS: -4.76 Total: -140.21 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -61.81 1.14 -60.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134553343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.470 kcal (2) G-P(sol) polarization free energy of solvation -61.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds