Wall clock time and date at job start Fri Apr 10 2020 18:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46800 * 2 1 4 4 C 1.53004 * 109.46692 * 240.00106 * 2 1 3 5 5 C 1.53004 * 109.46475 * 174.79466 * 4 2 1 6 6 H 1.09009 * 109.47147 * 54.13262 * 5 4 2 7 7 C 1.52990 * 109.47469 * 294.13048 * 5 4 2 8 8 N 1.46497 * 109.47144 * 174.12543 * 5 4 2 9 9 C 1.36938 * 120.00655 * 208.22396 * 8 5 4 10 10 H 1.08005 * 119.99719 * 4.98257 * 9 8 5 11 11 C 1.38810 * 120.00367 * 184.98113 * 9 8 5 12 12 N 1.31623 * 119.99955 * 184.65746 * 11 9 8 13 13 Si 1.86798 * 119.99774 * 4.65999 * 11 9 8 14 14 H 1.48506 * 109.47286 * 94.15688 * 13 11 9 15 15 H 1.48501 * 109.46945 * 214.14940 * 13 11 9 16 16 H 1.48500 * 109.47436 * 334.15112 * 13 11 9 17 17 N 1.46496 * 109.46989 * 120.00080 * 2 1 3 18 18 C 1.34777 * 119.99915 * 271.72496 * 17 2 1 19 19 O 1.21514 * 120.00203 * 4.69411 * 18 17 2 20 20 C 1.48117 * 119.99615 * 184.69259 * 18 17 2 21 21 C 1.39830 * 119.37152 * 174.85814 * 20 18 17 22 22 C 1.36963 * 119.60611 * 179.97438 * 21 20 18 23 23 C 1.39810 * 118.25750 * 0.02562 * 22 21 20 24 24 N 1.34645 * 135.00800 * 179.97438 * 23 22 21 25 25 N 1.28669 * 109.16303 * 180.02562 * 24 23 22 26 26 N 1.28773 * 111.84482 * 0.02562 * 25 24 23 27 27 H 0.97004 * 125.85725 * 180.02562 * 26 25 24 28 28 C 1.37247 * 108.28296 * 359.97438 * 26 25 24 29 29 N 1.31954 * 134.70982 * 180.33246 * 28 26 25 30 30 H 1.08993 * 109.47183 * 300.00194 * 1 2 3 31 31 H 1.08998 * 109.47370 * 60.00096 * 1 2 3 32 32 H 1.09000 * 109.46921 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47468 * 294.79328 * 4 2 1 34 34 H 1.08994 * 109.47326 * 54.80490 * 4 2 1 35 35 H 1.09004 * 109.47584 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47215 * 299.99709 * 7 5 4 37 37 H 1.08999 * 109.47650 * 59.99630 * 7 5 4 38 38 H 0.97005 * 119.99847 * 28.22420 * 8 5 4 39 39 H 0.96998 * 119.99900 * 180.02562 * 12 11 9 40 40 H 0.97000 * 120.00179 * 91.73114 * 17 2 1 41 41 H 1.08003 * 120.19581 * 359.97438 * 21 20 18 42 42 H 1.07998 * 120.87207 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5644 -0.6089 -1.3164 6 1 3.9968 -0.9712 -0.3837 7 6 3.9592 0.8541 -1.5272 8 7 4.0648 -1.4154 -2.4323 9 6 5.3244 -1.9502 -2.3800 10 1 5.9186 -1.8457 -1.4841 11 6 5.8375 -2.6265 -3.4782 12 7 7.0100 -3.2191 -3.3972 13 14 4.8641 -2.6954 -5.0710 14 1 5.3027 -1.5956 -5.9673 15 1 5.0988 -4.0011 -5.7384 16 1 3.4170 -2.5445 -4.7738 17 7 2.0183 -0.6906 1.1961 18 6 2.2098 -0.0038 2.3398 19 8 1.8973 1.1688 2.4040 20 6 2.8011 -0.6783 3.5185 21 6 3.0942 0.0711 4.6621 22 6 3.6405 -0.5478 5.7550 23 6 3.8873 -1.9221 5.6829 24 7 4.3966 -2.8434 6.5223 25 7 4.4005 -3.9902 5.9388 26 7 3.9251 -3.9215 4.7441 27 1 3.8339 -4.6629 4.1253 28 6 3.5685 -2.6194 4.4968 29 7 3.0382 -1.9810 3.4709 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7548 -1.7723 -1.2040 34 1 1.6026 -0.2640 -2.1368 35 1 5.0452 0.9341 -1.5754 36 1 3.5268 1.2164 -2.4599 37 1 3.5868 1.4542 -0.6969 38 1 3.5039 -1.5707 -3.2084 39 1 7.3688 -3.6914 -4.1648 40 1 2.2039 -1.6422 1.1650 41 1 2.8909 1.1316 4.6835 42 1 3.8745 0.0110 6.6490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134553344.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:28 Heat of formation + Delta-G solvation = 101.535111 kcal Electronic energy + Delta-G solvation = -26221.248329 eV Core-core repulsion = 22432.057998 eV Total energy + Delta-G solvation = -3789.190331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.73989 -40.51011 -38.84206 -37.09680 -34.92935 -34.61117 -32.58496 -32.06489 -31.55303 -30.56179 -29.11836 -26.44361 -26.10499 -24.36755 -23.61386 -23.09914 -21.92666 -20.81124 -19.90424 -19.25778 -18.84929 -18.24591 -17.53147 -16.96385 -16.23237 -15.73038 -15.29870 -14.82433 -14.62277 -14.40545 -13.90292 -13.77875 -13.56770 -13.39056 -13.27075 -12.73319 -12.65839 -12.57827 -12.25541 -12.16867 -12.04644 -12.00707 -11.79874 -11.33865 -11.04620 -10.72811 -10.60376 -10.51599 -10.24112 -9.99126 -9.89861 -9.65771 -9.62530 -9.47284 -9.08750 -8.97269 -7.30258 -5.80650 -3.15943 -0.27236 0.57711 1.71409 1.76424 2.48548 2.88424 3.32238 3.33534 3.37399 3.38341 3.42447 3.82534 3.97502 4.37302 4.41544 4.55286 4.75513 4.95318 5.03187 5.11099 5.24925 5.34358 5.45434 5.46375 5.53205 5.60101 5.67971 5.80655 5.85355 5.90242 6.06716 6.13616 6.19143 6.20688 6.34796 6.46499 6.51881 6.80540 6.93729 6.99923 7.43150 7.73328 7.97248 8.00503 8.38621 9.18297 9.90593 10.11101 11.37759 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.003609 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.885589 B = 7756.731778 C = 9368.828112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.097 0.903 4 C -0.138 4.138 5 C 0.177 3.823 6 H 0.056 0.944 7 C -0.168 4.168 8 N -0.750 5.750 9 C -0.241 4.241 10 H 0.087 0.913 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.888 3.112 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.278 1.278 17 N -0.694 5.694 18 C 0.573 3.427 19 O -0.527 6.527 20 C 0.152 3.848 21 C -0.122 4.122 22 C -0.002 4.002 23 C -0.023 4.023 24 N -0.241 5.241 25 N 0.012 4.988 26 N -0.399 5.399 27 H 0.461 0.539 28 C 0.218 3.782 29 N -0.440 5.440 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.412 0.588 41 H 0.167 0.833 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 4.452 16.317 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.115 0.885 4 C -0.176 4.176 5 C 0.067 3.933 6 H 0.074 0.926 7 C -0.228 4.228 8 N -0.394 5.394 9 C -0.371 4.371 10 H 0.105 0.895 11 C -0.192 4.192 12 N -0.582 5.582 13 Si 0.719 3.281 14 H -0.212 1.212 15 H -0.219 1.219 16 H -0.205 1.205 17 N -0.345 5.345 18 C 0.356 3.644 19 O -0.402 6.402 20 C -0.003 4.003 21 C -0.145 4.145 22 C -0.033 4.033 23 C -0.151 4.151 24 N -0.117 5.117 25 N 0.029 4.971 26 N -0.131 5.131 27 H 0.310 0.690 28 C -0.027 4.027 29 N -0.157 5.157 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.249 0.751 41 H 0.185 0.815 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.537 3.807 16.773 21.283 hybrid contribution -0.642 -0.212 -1.819 1.941 sum -13.178 3.595 14.954 20.253 Atomic orbital electron populations 1.22175 0.95225 1.02167 1.02450 1.21186 0.93724 0.98054 0.83446 0.88463 1.22274 0.98163 1.00934 0.96275 1.20178 0.90272 0.90493 0.92322 0.92593 1.22481 1.02094 0.98443 0.99818 1.42874 1.16090 1.61217 1.19185 1.19058 0.90403 1.27425 1.00234 0.89472 1.24695 0.96496 1.00223 0.97777 1.69713 1.18486 1.39468 1.30541 0.86497 0.79426 0.77068 0.85131 1.21224 1.21862 1.20475 1.45994 1.64966 1.13561 1.09967 1.17634 0.78546 0.85914 0.82261 1.90805 1.51141 1.15269 1.82983 1.21285 0.96364 0.87484 0.95155 1.21745 0.98358 1.02878 0.91562 1.20518 0.93715 0.89647 0.99437 1.20693 1.04730 0.96703 0.92986 1.75422 1.17704 0.94453 1.24151 1.78126 1.09677 1.18517 0.90794 1.44734 1.46627 1.08244 1.13462 0.68987 1.19770 1.02519 0.86910 0.93474 1.66266 1.12464 1.09495 1.27447 0.92198 0.91429 0.92455 0.91066 0.90507 0.92532 0.93594 0.93981 0.80475 0.93095 0.75103 0.81523 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.51 37.16 0.35 -1.30 16 2 C 0.14 1.69 2.47 -67.93 -0.17 1.52 16 3 H 0.10 1.28 5.77 -51.93 -0.30 0.98 16 4 C -0.14 -1.90 4.44 -26.73 -0.12 -2.01 16 5 C 0.18 3.18 2.92 -67.94 -0.20 2.98 16 6 H 0.06 1.07 7.52 -51.92 -0.39 0.68 16 7 C -0.17 -2.90 9.29 37.15 0.35 -2.55 16 8 N -0.75 -17.01 4.87 -53.43 -0.26 -17.27 16 9 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 10 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 11 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 12 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 13 Si 0.89 21.78 28.00 -169.99 -4.76 17.02 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.28 -6.29 6.16 56.52 0.35 -5.94 16 17 N -0.69 -8.38 4.40 -54.66 -0.24 -8.62 16 18 C 0.57 7.23 7.78 -12.21 -0.10 7.14 16 19 O -0.53 -7.58 15.95 5.35 0.09 -7.49 16 20 C 0.15 1.73 6.74 -82.93 -0.56 1.17 16 21 C -0.12 -1.11 9.55 -39.45 -0.38 -1.49 16 22 C 0.00 -0.02 10.16 -39.46 -0.40 -0.42 16 23 C -0.02 -0.26 7.38 -84.91 -0.63 -0.89 16 24 N -0.24 -2.89 12.43 32.12 0.40 -2.49 16 25 N 0.01 0.14 13.28 60.35 0.80 0.94 16 26 N -0.40 -3.82 7.06 31.13 0.22 -3.60 16 27 H 0.46 2.92 8.96 -190.25 -1.71 1.21 16 28 C 0.22 2.47 8.56 -156.28 -1.34 1.13 16 29 N -0.44 -5.15 9.55 -8.90 -0.09 -5.23 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.63 6.49 -51.93 -0.34 0.30 16 38 H 0.36 8.07 5.57 -40.82 -0.23 7.84 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.41 4.85 7.95 -40.82 -0.32 4.53 16 41 H 0.17 1.24 7.62 -52.48 -0.40 0.84 16 42 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -33.78 355.92 -7.81 -41.59 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.68 Total: 9.52 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.44 Total: -1.49 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: 1.61 Total: -64.50 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.49 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.76 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.78 -7.81 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134553344.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.125 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds