Wall clock time and date at job start Fri Apr 10 2020 18:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47545 * 2 1 4 4 C 1.53002 * 109.46610 * 239.99953 * 2 1 3 5 5 C 1.53006 * 109.46791 * 175.00557 * 4 2 1 6 6 H 1.09003 * 109.46914 * 304.99552 * 5 4 2 7 7 C 1.52999 * 109.46809 * 185.00139 * 5 4 2 8 8 N 1.46493 * 109.47135 * 64.99692 * 5 4 2 9 9 C 1.34784 * 119.99864 * 204.99938 * 8 5 4 10 10 O 1.21566 * 119.99936 * 359.72920 * 9 8 5 11 11 C 1.47717 * 120.00134 * 179.72605 * 9 8 5 12 12 C 1.40124 * 120.34950 * 0.02562 * 11 9 8 13 13 N 1.31262 * 121.14552 * 179.97438 * 12 11 9 14 14 C 1.32713 * 121.80537 * 0.02562 * 13 12 11 15 15 N 1.37114 * 133.41140 * 180.02562 * 14 13 12 16 16 H 0.97006 * 126.58806 * 359.97438 * 15 14 13 17 17 N 1.40183 * 106.82501 * 179.97438 * 15 14 13 18 18 N 1.28673 * 109.51159 * 0.02562 * 17 15 14 19 19 C 1.35332 * 109.99577 * 359.97438 * 18 17 15 20 20 C 1.39427 * 120.35098 * 179.72209 * 11 9 8 21 21 N 1.46503 * 109.46876 * 120.00038 * 2 1 3 22 22 C 1.36933 * 120.00247 * 274.99506 * 21 2 1 23 23 H 1.08001 * 119.99538 * 0.02562 * 22 21 2 24 24 C 1.38802 * 120.00371 * 180.02562 * 22 21 2 25 25 N 1.31623 * 120.00104 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00342 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46918 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47236 * 120.00434 * 26 24 22 29 29 H 1.48505 * 109.47006 * 240.00313 * 26 24 22 30 30 H 1.09000 * 109.47038 * 59.99736 * 1 2 3 31 31 H 1.08994 * 109.47545 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47069 * 300.00301 * 1 2 3 33 33 H 1.08997 * 109.47377 * 55.00465 * 4 2 1 34 34 H 1.09002 * 109.46930 * 294.99663 * 4 2 1 35 35 H 1.09003 * 109.46903 * 299.99419 * 7 5 4 36 36 H 1.08994 * 109.47399 * 59.99551 * 7 5 4 37 37 H 1.09003 * 109.46886 * 180.02562 * 7 5 4 38 38 H 0.97000 * 120.00740 * 24.72630 * 8 5 4 39 39 H 1.07998 * 119.42454 * 359.97438 * 12 11 9 40 40 H 1.08003 * 120.95487 * 359.97438 * 20 11 9 41 41 H 0.97003 * 119.99774 * 94.99609 * 21 2 1 42 42 H 0.96993 * 120.00271 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6135 -1.3137 6 1 3.8571 0.4356 -1.2678 7 6 4.0643 -1.2252 -2.6241 8 7 4.1535 -1.3344 -0.1825 9 6 5.3747 -0.9913 0.2733 10 8 5.9896 -0.0869 -0.2576 11 6 5.9658 -1.7142 1.4179 12 6 5.2637 -2.7581 2.0349 13 7 5.7743 -3.4112 3.0526 14 6 6.9716 -3.1163 3.5433 15 7 7.7205 -3.6277 4.5717 16 1 7.4714 -4.3562 5.1619 17 7 8.9155 -2.8956 4.6065 18 7 8.9022 -2.0067 3.6763 19 6 7.7428 -2.0807 2.9821 20 6 7.2310 -1.3692 1.8916 21 7 2.0183 -0.6906 1.1962 22 6 2.1492 -0.0076 2.3758 23 1 1.8920 1.0403 2.4243 24 6 2.6123 -0.6617 3.5090 25 7 2.9262 -1.9386 3.4497 26 14 2.7901 0.2699 5.1183 27 1 2.3754 1.6821 4.9211 28 1 1.9300 -0.3595 6.1523 29 1 4.2072 0.2279 5.5606 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -0.2618 -2.1370 34 1 1.7515 -1.7716 -1.2055 35 1 3.7720 -2.2743 -2.6700 36 1 3.6262 -0.6888 -3.4657 37 1 5.1507 -1.1488 -2.6698 38 1 3.6629 -2.0560 0.2412 39 1 4.2855 -3.0299 1.6668 40 1 7.7978 -0.5726 1.4327 41 1 2.2489 -1.6319 1.1526 42 1 3.2502 -2.3957 4.2415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134623579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:36 Heat of formation + Delta-G solvation = 101.499392 kcal Electronic energy + Delta-G solvation = -27695.891028 eV Core-core repulsion = 23906.699148 eV Total energy + Delta-G solvation = -3789.191879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02180 -39.69364 -37.92976 -36.81915 -34.33310 -33.66031 -32.50838 -31.42059 -31.04784 -29.72844 -28.59707 -26.41731 -24.64834 -24.04341 -23.76088 -22.37687 -21.35584 -20.42523 -19.93248 -18.33669 -18.13205 -17.32557 -16.53094 -16.18694 -15.79537 -15.50137 -14.90795 -14.48276 -14.05775 -13.91969 -13.58584 -13.34521 -13.08617 -12.85532 -12.74954 -12.47947 -12.32910 -12.20296 -12.00209 -11.83695 -11.73645 -11.69119 -11.25309 -11.09073 -10.94498 -10.83432 -10.45539 -10.32079 -10.01352 -9.84451 -9.72164 -9.13847 -9.05183 -8.94530 -8.71688 -8.46177 -7.07680 -5.96403 -3.17695 0.54062 1.04753 2.27985 2.38268 3.25452 3.33884 3.41644 3.43887 3.54962 4.14096 4.20978 4.47707 4.59612 4.63406 4.98924 5.05029 5.16961 5.28448 5.35585 5.43119 5.44888 5.60764 5.72535 5.80965 5.88463 5.93115 5.96059 6.06157 6.15687 6.22196 6.30527 6.35520 6.46268 6.51085 6.58619 6.76754 6.94302 6.95806 7.03231 7.57978 7.89792 8.00040 8.10359 8.24463 8.70529 9.36142 9.87109 10.22806 11.26055 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.005876 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.665217 B = 4763.678514 C = 6375.171693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.086 0.914 7 C -0.163 4.163 8 N -0.692 5.692 9 C 0.583 3.417 10 O -0.555 6.555 11 C -0.202 4.202 12 C 0.268 3.732 13 N -0.487 5.487 14 C 0.301 3.699 15 N -0.492 5.492 16 H 0.449 0.551 17 N -0.006 5.006 18 N -0.196 5.196 19 C -0.093 4.093 20 C 0.071 3.929 21 N -0.716 5.716 22 C -0.214 4.214 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.923 5.923 26 Si 0.898 3.102 27 H -0.282 1.282 28 H -0.293 1.293 29 H -0.296 1.296 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.403 0.597 39 H 0.184 0.816 40 H 0.156 0.844 41 H 0.376 0.624 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 -4.126 -7.796 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.068 0.932 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.104 0.896 7 C -0.222 4.222 8 N -0.344 5.344 9 C 0.369 3.631 10 O -0.434 6.434 11 C -0.210 4.210 12 C 0.095 3.905 13 N -0.202 5.202 14 C 0.056 3.944 15 N -0.217 5.217 16 H 0.296 0.704 17 N 0.011 4.989 18 N -0.077 5.077 19 C -0.219 4.219 20 C 0.040 3.960 21 N -0.358 5.358 22 C -0.345 4.345 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.730 3.270 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.223 1.223 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.241 0.759 39 H 0.200 0.800 40 H 0.174 0.826 41 H 0.211 0.789 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.420 -3.792 -6.927 8.605 hybrid contribution -0.920 -0.039 1.130 1.457 sum 2.501 -3.830 -5.797 7.384 Atomic orbital electron populations 1.22406 0.99107 1.00804 1.00029 1.20324 0.91774 0.95850 0.86244 0.93183 1.22225 0.93871 1.01741 0.99469 1.20852 0.92514 0.97382 0.84687 0.89606 1.22213 1.01914 1.00900 0.97127 1.45869 1.17306 1.37664 1.33585 1.17547 0.81395 0.82421 0.81711 1.90715 1.62119 1.30950 1.59645 1.20777 0.96306 1.02177 1.01766 1.23096 0.95833 0.86222 0.85358 1.66765 1.08114 1.31963 1.13354 1.19737 0.91797 0.92483 0.90416 1.47352 1.14310 1.32380 1.27697 0.70353 1.81578 1.00184 1.01711 1.15433 1.74737 1.17831 1.13239 1.01917 1.20288 0.94666 1.03336 1.03637 1.20914 0.92588 0.93853 0.88641 1.42503 1.77717 1.10073 1.05543 1.19312 1.34170 0.93884 0.87096 0.91238 1.24508 1.02720 0.96080 0.97531 1.69400 1.50634 1.08144 1.29046 0.86234 0.77175 0.79033 0.84551 1.20709 1.21983 1.22310 0.94492 0.93533 0.92861 0.90574 0.91589 0.92696 0.92006 0.92252 0.75871 0.79986 0.82640 0.78912 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.49 37.16 0.35 -2.18 16 2 C 0.17 2.78 2.89 -67.93 -0.20 2.58 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.74 4.43 -26.73 -0.12 -1.86 16 5 C 0.15 2.12 2.57 -67.93 -0.17 1.94 16 6 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 7 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 8 N -0.69 -10.94 3.76 -54.79 -0.21 -11.15 16 9 C 0.58 10.56 7.74 -12.38 -0.10 10.47 16 10 O -0.55 -11.23 16.06 5.31 0.09 -11.15 16 11 C -0.20 -3.61 5.88 -104.87 -0.62 -4.22 16 12 C 0.27 4.78 8.96 -17.09 -0.15 4.62 16 13 N -0.49 -8.87 10.37 -12.03 -0.12 -8.99 16 14 C 0.30 5.32 8.49 -155.93 -1.32 3.99 16 15 N -0.49 -7.36 7.52 31.15 0.23 -7.12 16 16 H 0.45 5.07 8.96 -182.53 -1.64 3.43 16 17 N -0.01 -0.10 13.82 60.35 0.83 0.73 16 18 N -0.20 -3.47 12.40 32.17 0.40 -3.07 16 19 C -0.09 -1.68 7.27 -84.73 -0.62 -2.30 16 20 C 0.07 1.25 9.75 -38.51 -0.38 0.87 16 21 N -0.72 -14.39 3.84 -53.43 -0.21 -14.59 16 22 C -0.21 -5.12 9.93 -15.06 -0.15 -5.26 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.92 -22.47 10.65 55.49 0.59 -21.88 16 26 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.40 6.25 4.53 -40.82 -0.18 6.06 16 39 H 0.18 3.17 5.80 -52.49 -0.30 2.86 16 40 H 0.16 2.54 7.71 -52.48 -0.40 2.14 16 41 H 0.38 7.57 5.70 -40.82 -0.23 7.33 16 42 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -27.89 351.34 -7.84 -35.73 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.50 Total: 13.05 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -3.21 Total: 6.67 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: 1.52 Total: -66.08 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.89 -7.84 -35.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134623579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.225 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds