Wall clock time and date at job start Fri Apr 10 2020 18:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47545 * 2 1 4 4 C 1.53002 * 109.46610 * 239.99953 * 2 1 3 5 5 C 1.53006 * 109.46791 * 175.00557 * 4 2 1 6 6 H 1.09003 * 109.46914 * 304.99552 * 5 4 2 7 7 C 1.52999 * 109.46809 * 185.00139 * 5 4 2 8 8 N 1.46493 * 109.47135 * 64.99692 * 5 4 2 9 9 C 1.34784 * 119.99864 * 204.99938 * 8 5 4 10 10 O 1.21566 * 119.99936 * 359.72920 * 9 8 5 11 11 C 1.47717 * 120.00134 * 179.72605 * 9 8 5 12 12 C 1.40124 * 120.34950 * 0.02562 * 11 9 8 13 13 N 1.31262 * 121.14552 * 179.97438 * 12 11 9 14 14 C 1.32713 * 121.80537 * 0.02562 * 13 12 11 15 15 N 1.37114 * 133.41140 * 180.02562 * 14 13 12 16 16 H 0.97006 * 126.58806 * 359.97438 * 15 14 13 17 17 N 1.40183 * 106.82501 * 179.97438 * 15 14 13 18 18 N 1.28673 * 109.51159 * 0.02562 * 17 15 14 19 19 C 1.35332 * 109.99577 * 359.97438 * 18 17 15 20 20 C 1.39427 * 120.35098 * 179.72209 * 11 9 8 21 21 N 1.46503 * 109.46876 * 120.00038 * 2 1 3 22 22 C 1.36933 * 120.00247 * 274.99506 * 21 2 1 23 23 H 1.08001 * 119.99538 * 0.02562 * 22 21 2 24 24 C 1.38802 * 120.00371 * 180.02562 * 22 21 2 25 25 N 1.31623 * 120.00104 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00342 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46918 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47236 * 120.00434 * 26 24 22 29 29 H 1.48505 * 109.47006 * 240.00313 * 26 24 22 30 30 H 1.09000 * 109.47038 * 59.99736 * 1 2 3 31 31 H 1.08994 * 109.47545 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47069 * 300.00301 * 1 2 3 33 33 H 1.08997 * 109.47377 * 55.00465 * 4 2 1 34 34 H 1.09002 * 109.46930 * 294.99663 * 4 2 1 35 35 H 1.09003 * 109.46903 * 299.99419 * 7 5 4 36 36 H 1.08994 * 109.47399 * 59.99551 * 7 5 4 37 37 H 1.09003 * 109.46886 * 180.02562 * 7 5 4 38 38 H 0.97000 * 120.00740 * 24.72630 * 8 5 4 39 39 H 1.07998 * 119.42454 * 359.97438 * 12 11 9 40 40 H 1.08003 * 120.95487 * 359.97438 * 20 11 9 41 41 H 0.97003 * 119.99774 * 94.99609 * 21 2 1 42 42 H 0.96993 * 120.00271 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6135 -1.3137 6 1 3.8571 0.4356 -1.2678 7 6 4.0643 -1.2252 -2.6241 8 7 4.1535 -1.3344 -0.1825 9 6 5.3747 -0.9913 0.2733 10 8 5.9896 -0.0869 -0.2576 11 6 5.9658 -1.7142 1.4179 12 6 5.2637 -2.7581 2.0349 13 7 5.7743 -3.4112 3.0526 14 6 6.9716 -3.1163 3.5433 15 7 7.7205 -3.6277 4.5717 16 1 7.4714 -4.3562 5.1619 17 7 8.9155 -2.8956 4.6065 18 7 8.9022 -2.0067 3.6763 19 6 7.7428 -2.0807 2.9821 20 6 7.2310 -1.3692 1.8916 21 7 2.0183 -0.6906 1.1962 22 6 2.1492 -0.0076 2.3758 23 1 1.8920 1.0403 2.4243 24 6 2.6123 -0.6617 3.5090 25 7 2.9262 -1.9386 3.4497 26 14 2.7901 0.2699 5.1183 27 1 2.3754 1.6821 4.9211 28 1 1.9300 -0.3595 6.1523 29 1 4.2072 0.2279 5.5606 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -0.2618 -2.1370 34 1 1.7515 -1.7716 -1.2055 35 1 3.7720 -2.2743 -2.6700 36 1 3.6262 -0.6888 -3.4657 37 1 5.1507 -1.1488 -2.6698 38 1 3.6629 -2.0560 0.2412 39 1 4.2855 -3.0299 1.6668 40 1 7.7978 -0.5726 1.4327 41 1 2.2489 -1.6319 1.1526 42 1 3.2502 -2.3957 4.2415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134623579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:35 Heat of formation + Delta-G solvation = 83.342493 kcal Electronic energy + Delta-G solvation = -27696.678370 eV Core-core repulsion = 23906.699148 eV Total energy + Delta-G solvation = -3789.979222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.40026 -41.06577 -39.29459 -38.21758 -35.78993 -35.03465 -34.08079 -32.81699 -32.43209 -31.12078 -30.06919 -27.52358 -26.02210 -25.55710 -25.36498 -23.75410 -22.63673 -21.69891 -21.30103 -19.69877 -19.50629 -19.06203 -17.88890 -17.56584 -17.17150 -16.87753 -16.53389 -15.88716 -15.54518 -15.47829 -15.07696 -14.73369 -14.32958 -14.22000 -14.12233 -13.87694 -13.70708 -13.52184 -13.26860 -13.17009 -13.06013 -12.93234 -12.73687 -12.60477 -12.56606 -12.23137 -12.13074 -11.64230 -11.58050 -11.35207 -11.17011 -10.88259 -10.48695 -10.33692 -10.14208 -9.77893 -8.76803 -7.84914 -5.01947 -0.83486 -0.36146 0.97083 1.00675 1.38024 1.46856 1.47432 1.83927 2.23574 2.58404 2.74137 2.86025 3.20185 3.26389 3.51230 3.65266 3.78929 3.83178 4.00224 4.10893 4.25446 4.34264 4.47372 4.57806 4.65902 4.76270 4.85076 4.92648 4.96331 5.00200 5.17178 5.17994 5.22342 5.25911 5.47112 5.49642 5.65950 5.69365 5.75844 5.79092 6.39314 6.50664 6.65931 6.72140 7.33449 7.49551 8.19661 8.48391 9.35057 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.005876 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.665217 B = 4763.678514 C = 6375.171693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.161 3.839 3 H 0.032 0.968 4 C -0.121 4.121 5 C 0.146 3.854 6 H 0.062 0.938 7 C -0.154 4.154 8 N -0.683 5.683 9 C 0.579 3.421 10 O -0.581 6.581 11 C -0.207 4.207 12 C 0.272 3.728 13 N -0.493 5.493 14 C 0.289 3.711 15 N -0.471 5.471 16 H 0.466 0.534 17 N 0.004 4.996 18 N -0.210 5.210 19 C -0.101 4.101 20 C 0.068 3.932 21 N -0.717 5.717 22 C -0.211 4.211 23 H 0.055 0.945 24 C -0.043 4.043 25 N -0.922 5.922 26 Si 0.924 3.076 27 H -0.283 1.283 28 H -0.299 1.299 29 H -0.317 1.317 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.026 0.974 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.405 0.595 39 H 0.187 0.813 40 H 0.164 0.836 41 H 0.376 0.624 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -5.024 -9.326 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.050 0.950 4 C -0.159 4.159 5 C 0.042 3.958 6 H 0.080 0.920 7 C -0.212 4.212 8 N -0.334 5.334 9 C 0.365 3.635 10 O -0.464 6.464 11 C -0.216 4.216 12 C 0.099 3.901 13 N -0.207 5.207 14 C 0.043 3.957 15 N -0.199 5.199 16 H 0.317 0.683 17 N 0.021 4.979 18 N -0.091 5.091 19 C -0.227 4.227 20 C 0.037 3.963 21 N -0.360 5.360 22 C -0.343 4.343 23 H 0.073 0.927 24 C -0.237 4.237 25 N -0.573 5.573 26 Si 0.759 3.241 27 H -0.208 1.208 28 H -0.227 1.227 29 H -0.246 1.246 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.244 0.756 39 H 0.204 0.796 40 H 0.181 0.819 41 H 0.211 0.789 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.753 -4.713 -8.468 10.074 hybrid contribution -0.657 0.238 1.611 1.756 sum 2.096 -4.475 -6.856 8.451 Atomic orbital electron populations 1.22273 0.97799 1.01074 1.00292 1.20517 0.92591 0.95115 0.86505 0.95025 1.22148 0.92669 1.02409 0.98666 1.21020 0.93381 0.96159 0.85242 0.91986 1.22123 1.00807 1.02029 0.96219 1.45918 1.16441 1.37337 1.33709 1.17630 0.81983 0.82176 0.81673 1.90695 1.62950 1.32158 1.60550 1.20844 0.96501 1.02297 1.01954 1.23155 0.95937 0.85953 0.85094 1.66777 1.08328 1.32182 1.13460 1.19883 0.91833 0.92840 0.91110 1.47358 1.13363 1.32195 1.27028 0.68340 1.81527 1.00350 1.01235 1.14744 1.74759 1.17943 1.13968 1.02456 1.20452 0.94907 1.03536 1.03818 1.21050 0.92655 0.93982 0.88599 1.42515 1.77902 1.10013 1.05561 1.19270 1.33271 0.93372 0.88431 0.92708 1.24726 1.04142 0.96663 0.98185 1.69443 1.51845 1.07759 1.28249 0.85814 0.75502 0.78691 0.84068 1.20819 1.22701 1.24589 0.91433 0.93181 0.95425 0.87234 0.90091 0.91081 0.89601 0.94018 0.75585 0.79597 0.81881 0.78864 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.49 71.98 0.68 -3.75 16 2 C 0.16 5.06 2.89 44.99 0.13 5.19 16 3 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 4 C -0.12 -2.74 4.43 30.60 0.14 -2.60 16 5 C 0.15 3.84 2.57 44.99 0.12 3.95 16 6 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 7 C -0.15 -3.17 9.48 71.98 0.68 -2.48 16 8 N -0.68 -20.90 3.76 -445.52 -1.68 -22.57 16 9 C 0.58 20.88 7.74 86.75 0.67 21.55 16 10 O -0.58 -23.68 16.06 -3.92 -0.06 -23.74 16 11 C -0.21 -7.39 5.88 -20.03 -0.12 -7.51 16 12 C 0.27 9.56 8.96 85.24 0.76 10.32 16 13 N -0.49 -17.61 10.37 -191.97 -1.99 -19.60 16 14 C 0.29 9.96 8.49 134.01 1.14 11.10 16 15 N -0.47 -13.43 7.52 -55.37 -0.42 -13.84 16 16 H 0.47 9.68 8.96 -213.26 -1.91 7.77 16 17 N 0.00 0.14 13.82 37.02 0.51 0.65 16 18 N -0.21 -7.28 12.40 -52.14 -0.65 -7.92 16 19 C -0.10 -3.61 7.27 39.63 0.29 -3.33 16 20 C 0.07 2.39 9.75 22.96 0.22 2.61 16 21 N -0.72 -28.20 3.84 -322.95 -1.24 -29.45 16 22 C -0.21 -10.10 9.93 84.03 0.83 -9.26 16 23 H 0.05 2.76 7.83 -2.91 -0.02 2.73 16 24 C -0.04 -2.13 5.50 84.86 0.47 -1.66 16 25 N -0.92 -44.69 10.65 21.65 0.23 -44.46 16 26 Si 0.92 44.52 29.55 68.60 2.03 46.55 16 27 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 28 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 29 H -0.32 -16.25 7.11 99.48 0.71 -15.54 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.41 12.04 4.53 -92.71 -0.42 11.62 16 39 H 0.19 6.34 5.80 -2.91 -0.02 6.33 16 40 H 0.16 5.38 7.71 -2.91 -0.02 5.35 16 41 H 0.38 14.68 5.70 -92.71 -0.53 14.15 16 42 H 0.25 12.56 8.31 -92.71 -0.77 11.79 16 Total: -1.00 -59.83 351.34 0.99 -58.84 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -1.76 Total: 31.42 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: 6.02 Total: 24.13 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -5.23 Total: -137.19 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.06 Total: -23.74 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -59.83 0.99 -58.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134623579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.183 kcal (2) G-P(sol) polarization free energy of solvation -59.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds