Wall clock time and date at job start Fri Apr 10 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21571 * 119.99859 * 0.02562 * 18 17 2 20 20 C 1.47718 * 120.00073 * 180.02562 * 18 17 2 21 21 C 1.40115 * 120.35279 * 359.97438 * 20 18 17 22 22 N 1.31253 * 121.15024 * 179.97438 * 21 20 18 23 23 C 1.32719 * 121.80482 * 0.02719 * 22 21 20 24 24 N 1.37120 * 133.40818 * 179.97438 * 23 22 21 25 25 H 0.97003 * 126.58713 * 359.97438 * 24 23 22 26 26 N 1.40188 * 106.81712 * 179.97438 * 24 23 22 27 27 N 1.28666 * 109.51196 * 359.97438 * 26 24 23 28 28 C 1.35327 * 109.99673 * 359.97438 * 27 26 24 29 29 C 1.39436 * 120.35044 * 179.72454 * 20 18 17 30 30 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 31 31 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 33 33 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 34 34 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 35 35 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 36 36 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 37 37 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 38 38 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 41 41 H 1.07998 * 119.41962 * 359.97438 * 21 20 18 42 42 H 1.08005 * 120.95196 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.4946 -0.1451 3.0435 15 1 8.3096 -2.3787 2.5670 16 1 8.4552 -0.6482 0.8744 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8575 1.1611 2.4118 20 6 2.6398 -0.7147 3.5632 21 6 2.9750 -2.0740 3.5086 22 7 3.4148 -2.7080 4.5704 23 6 3.5618 -2.0966 5.7392 24 7 3.9901 -2.5134 6.9734 25 1 4.2818 -3.4070 7.2128 26 7 3.9254 -1.3998 7.8225 27 7 3.4935 -0.3820 7.1644 28 6 3.2496 -0.7311 5.8798 29 6 2.7812 -0.0248 4.7666 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6055 -0.2618 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 3.7722 -2.2743 -2.6698 36 1 3.6264 -0.6888 -3.4656 37 1 5.1509 -1.1487 -2.6696 38 1 3.6646 -2.0586 0.2387 39 1 5.6745 -3.1228 2.6790 40 1 2.2489 -1.6319 1.1527 41 1 2.8697 -2.6094 2.5766 42 1 2.5348 1.0244 4.8378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134623580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:39 Heat of formation + Delta-G solvation = 101.588317 kcal Electronic energy + Delta-G solvation = -27693.626746 eV Core-core repulsion = 23904.438722 eV Total energy + Delta-G solvation = -3789.188023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02796 -39.69368 -37.93372 -36.81629 -34.33128 -33.66389 -32.50534 -31.42239 -31.05122 -29.73015 -28.59451 -26.41588 -24.65167 -24.04541 -23.75555 -22.38139 -21.35642 -20.42370 -19.93125 -18.34062 -18.13403 -17.32200 -16.53205 -16.18974 -15.80004 -15.50289 -14.90507 -14.48117 -14.05493 -13.92126 -13.58669 -13.34435 -13.08599 -12.85221 -12.75309 -12.48393 -12.33247 -12.20090 -12.00153 -11.83521 -11.73512 -11.69436 -11.25588 -11.09059 -10.92468 -10.83177 -10.45826 -10.33856 -10.02074 -9.83916 -9.72031 -9.13169 -9.05554 -8.94830 -8.71989 -8.46156 -7.07390 -5.95909 -3.17140 0.53697 1.04299 2.27548 2.37758 3.25367 3.34840 3.40842 3.43909 3.54812 4.13843 4.20419 4.48075 4.59151 4.62870 4.98940 5.04765 5.16614 5.28419 5.35775 5.43182 5.45121 5.60738 5.72110 5.81006 5.88489 5.93164 5.95835 6.06314 6.15844 6.22011 6.30592 6.35622 6.46461 6.51227 6.58111 6.77014 6.93927 6.95988 7.03305 7.57810 7.89321 8.00063 8.09825 8.24915 8.70610 9.36590 9.87639 10.23399 11.26485 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.005870 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.505155 B = 4768.639214 C = 6373.804753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.086 0.914 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.050 0.950 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.215 4.215 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.923 5.923 13 Si 0.897 3.103 14 H -0.293 1.293 15 H -0.293 1.293 16 H -0.283 1.283 17 N -0.692 5.692 18 C 0.583 3.417 19 O -0.555 6.555 20 C -0.201 4.201 21 C 0.268 3.732 22 N -0.487 5.487 23 C 0.301 3.699 24 N -0.492 5.492 25 H 0.449 0.551 26 N -0.006 5.006 27 N -0.196 5.196 28 C -0.093 4.093 29 C 0.071 3.929 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.052 0.948 38 H 0.376 0.624 39 H 0.260 0.740 40 H 0.403 0.597 41 H 0.183 0.817 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 -0.826 -0.615 9.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.104 0.896 4 C -0.173 4.173 5 C 0.058 3.942 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.346 4.346 10 H 0.087 0.913 11 C -0.208 4.208 12 N -0.572 5.572 13 Si 0.729 3.271 14 H -0.221 1.221 15 H -0.219 1.219 16 H -0.209 1.209 17 N -0.344 5.344 18 C 0.369 3.631 19 O -0.434 6.434 20 C -0.210 4.210 21 C 0.095 3.905 22 N -0.202 5.202 23 C 0.056 3.944 24 N -0.217 5.217 25 H 0.297 0.703 26 N 0.011 4.989 27 N -0.077 5.077 28 C -0.219 4.219 29 C 0.041 3.959 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.211 0.789 39 H 0.070 0.930 40 H 0.241 0.759 41 H 0.200 0.800 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.564 -0.229 0.844 8.609 hybrid contribution 1.243 -0.673 -0.271 1.439 sum -7.321 -0.902 0.573 7.398 Atomic orbital electron populations 1.22216 0.96041 1.01778 1.02129 1.20854 0.92641 0.97809 0.84132 0.89592 1.22223 0.97694 1.00729 0.96655 1.20322 0.89765 0.95984 0.88113 0.93197 1.22406 1.01557 1.00389 0.97995 1.42490 1.18645 1.39842 1.34836 1.19267 0.93071 1.12586 1.09641 0.91305 1.24507 0.98427 0.98896 0.98956 1.69396 1.37702 1.24222 1.25917 0.86322 0.84705 0.77264 0.78807 1.22056 1.21923 1.20873 1.45861 1.65652 1.14270 1.08616 1.17543 0.76831 0.85984 0.82718 1.90717 1.51900 1.15437 1.85381 1.20780 1.08883 0.96449 0.94907 1.23084 0.83150 0.89888 0.94390 1.66767 1.18193 1.38948 0.96307 1.19735 0.95412 0.90864 0.88439 1.47358 1.55011 1.13552 1.05824 0.70347 1.81580 1.15963 0.87588 1.13761 1.74734 1.09440 1.20033 1.03505 1.20284 1.13675 0.94168 0.93799 1.20920 0.87291 1.00094 0.87645 0.92008 0.92690 0.92254 0.90582 0.91593 0.93539 0.94492 0.92860 0.78908 0.92999 0.75881 0.80009 0.82637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.15 2.12 2.57 -67.93 -0.17 1.95 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.13 -1.75 4.43 -26.73 -0.12 -1.86 16 5 C 0.17 2.78 2.89 -67.93 -0.20 2.59 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 C -0.16 -2.54 9.49 37.16 0.35 -2.19 16 8 N -0.72 -14.40 3.84 -53.42 -0.21 -14.61 16 9 C -0.21 -5.15 9.93 -15.06 -0.15 -5.30 16 10 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.92 -22.49 10.69 55.49 0.59 -21.89 16 13 Si 0.90 21.49 29.55 -169.99 -5.02 16.47 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 N -0.69 -10.94 3.75 -54.79 -0.21 -11.15 16 18 C 0.58 10.58 7.74 -12.39 -0.10 10.48 16 19 O -0.55 -11.26 16.06 5.30 0.09 -11.17 16 20 C -0.20 -3.60 5.88 -104.87 -0.62 -4.22 16 21 C 0.27 4.76 8.98 -17.09 -0.15 4.61 16 22 N -0.49 -8.83 10.37 -12.04 -0.12 -8.96 16 23 C 0.30 5.29 8.49 -155.93 -1.32 3.96 16 24 N -0.49 -7.31 7.53 31.15 0.23 -7.08 16 25 H 0.45 5.03 8.96 -182.53 -1.64 3.40 16 26 N -0.01 -0.10 13.82 60.35 0.83 0.73 16 27 N -0.20 -3.46 12.40 32.17 0.40 -3.06 16 28 C -0.09 -1.68 7.27 -84.74 -0.62 -2.29 16 29 C 0.07 1.26 9.76 -38.51 -0.38 0.88 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.38 7.58 5.70 -40.82 -0.23 7.34 16 39 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 40 H 0.40 6.24 4.54 -40.82 -0.19 6.06 16 41 H 0.18 3.15 5.82 -52.49 -0.31 2.85 16 42 H 0.16 2.55 7.71 -52.48 -0.40 2.15 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -27.86 351.43 -7.84 -35.70 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -6.51 Total: 13.08 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -3.21 Total: 6.64 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: 1.53 Total: -66.01 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.86 -7.84 -35.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134623580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.288 kcal (2) G-P(sol) polarization free energy of solvation -27.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds