Wall clock time and date at job start Fri Apr 10 2020 18:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21571 * 119.99859 * 0.02562 * 18 17 2 20 20 C 1.47718 * 120.00073 * 180.02562 * 18 17 2 21 21 C 1.40115 * 120.35279 * 359.97438 * 20 18 17 22 22 N 1.31253 * 121.15024 * 179.97438 * 21 20 18 23 23 C 1.32719 * 121.80482 * 0.02719 * 22 21 20 24 24 N 1.37120 * 133.40818 * 179.97438 * 23 22 21 25 25 H 0.97003 * 126.58713 * 359.97438 * 24 23 22 26 26 N 1.40188 * 106.81712 * 179.97438 * 24 23 22 27 27 N 1.28666 * 109.51196 * 359.97438 * 26 24 23 28 28 C 1.35327 * 109.99673 * 359.97438 * 27 26 24 29 29 C 1.39436 * 120.35044 * 179.72454 * 20 18 17 30 30 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 31 31 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 33 33 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 34 34 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 35 35 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 36 36 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 37 37 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 38 38 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 41 41 H 1.07998 * 119.41962 * 359.97438 * 21 20 18 42 42 H 1.08005 * 120.95196 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.4946 -0.1451 3.0435 15 1 8.3096 -2.3787 2.5670 16 1 8.4552 -0.6482 0.8744 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8575 1.1611 2.4118 20 6 2.6398 -0.7147 3.5632 21 6 2.9750 -2.0740 3.5086 22 7 3.4148 -2.7080 4.5704 23 6 3.5618 -2.0966 5.7392 24 7 3.9901 -2.5134 6.9734 25 1 4.2818 -3.4070 7.2128 26 7 3.9254 -1.3998 7.8225 27 7 3.4935 -0.3820 7.1644 28 6 3.2496 -0.7311 5.8798 29 6 2.7812 -0.0248 4.7666 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6055 -0.2618 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 3.7722 -2.2743 -2.6698 36 1 3.6264 -0.6888 -3.4656 37 1 5.1509 -1.1487 -2.6696 38 1 3.6646 -2.0586 0.2387 39 1 5.6745 -3.1228 2.6790 40 1 2.2489 -1.6319 1.1527 41 1 2.8697 -2.6094 2.5766 42 1 2.5348 1.0244 4.8378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134623580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:38 Heat of formation + Delta-G solvation = 83.451800 kcal Electronic energy + Delta-G solvation = -27694.413204 eV Core-core repulsion = 23904.438722 eV Total energy + Delta-G solvation = -3789.974482 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.40213 -41.06604 -39.29624 -38.21551 -35.78904 -35.03426 -34.07920 -32.81661 -32.43403 -31.12032 -30.06826 -27.52354 -26.02240 -25.55137 -25.36528 -23.75407 -22.63689 -21.69874 -21.30064 -19.69890 -19.50579 -19.05964 -17.88906 -17.56672 -17.17167 -16.87651 -16.53346 -15.88599 -15.54742 -15.47329 -15.07592 -14.73163 -14.33088 -14.21933 -14.12326 -13.87796 -13.70592 -13.52148 -13.26645 -13.17138 -13.05991 -12.92524 -12.73174 -12.60062 -12.56551 -12.22973 -12.15486 -11.63997 -11.57546 -11.35179 -11.17159 -10.87652 -10.48959 -10.33675 -10.14301 -9.77915 -8.76626 -7.84524 -5.01523 -0.83533 -0.36286 0.97266 1.00468 1.38990 1.46451 1.47239 1.83899 2.23507 2.58759 2.73966 2.85910 3.20002 3.26270 3.51444 3.65193 3.78813 3.83203 4.00209 4.11016 4.25453 4.34046 4.47332 4.57675 4.65824 4.76243 4.84967 4.92567 4.96319 5.00155 5.17134 5.17836 5.22295 5.25862 5.46963 5.49666 5.65794 5.69436 5.75966 5.79002 6.39542 6.50627 6.65903 6.72057 7.33443 7.49855 8.20073 8.48910 9.35289 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.005870 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.505155 B = 4768.639214 C = 6373.804753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 H 0.062 0.938 4 C -0.121 4.121 5 C 0.161 3.839 6 H 0.031 0.969 7 C -0.155 4.155 8 N -0.717 5.717 9 C -0.213 4.213 10 H 0.054 0.946 11 C -0.042 4.042 12 N -0.922 5.922 13 Si 0.923 3.077 14 H -0.312 1.312 15 H -0.301 1.301 16 H -0.282 1.282 17 N -0.683 5.683 18 C 0.579 3.421 19 O -0.582 6.582 20 C -0.207 4.207 21 C 0.272 3.728 22 N -0.493 5.493 23 C 0.289 3.711 24 N -0.471 5.471 25 H 0.466 0.534 26 N 0.005 4.995 27 N -0.210 5.210 28 C -0.101 4.101 29 C 0.068 3.932 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.376 0.624 39 H 0.249 0.751 40 H 0.405 0.595 41 H 0.187 0.813 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 -1.545 -1.592 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.080 0.920 4 C -0.159 4.159 5 C 0.053 3.947 6 H 0.049 0.951 7 C -0.214 4.214 8 N -0.360 5.360 9 C -0.345 4.345 10 H 0.073 0.927 11 C -0.236 4.236 12 N -0.573 5.573 13 Si 0.757 3.243 14 H -0.242 1.242 15 H -0.229 1.229 16 H -0.208 1.208 17 N -0.334 5.334 18 C 0.365 3.635 19 O -0.464 6.464 20 C -0.216 4.216 21 C 0.099 3.901 22 N -0.207 5.207 23 C 0.044 3.956 24 N -0.199 5.199 25 H 0.317 0.683 26 N 0.022 4.978 27 N -0.091 5.091 28 C -0.227 4.227 29 C 0.037 3.963 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.211 0.789 39 H 0.059 0.941 40 H 0.244 0.756 41 H 0.204 0.796 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.015 -0.978 -0.150 10.064 hybrid contribution 1.675 -0.426 0.090 1.731 sum -8.340 -1.404 -0.060 8.457 Atomic orbital electron populations 1.22125 0.93648 1.02944 1.02467 1.21022 0.94439 0.96503 0.83841 0.91994 1.22145 0.94629 1.01854 0.97256 1.20516 0.92248 0.94537 0.87422 0.95051 1.22272 0.99964 1.00919 0.98272 1.42501 1.17521 1.40100 1.35851 1.19236 0.94399 1.11704 1.09196 0.92749 1.24726 0.99166 0.99830 0.99927 1.69440 1.37454 1.24511 1.25863 0.85916 0.84466 0.75993 0.77877 1.24178 1.22855 1.20810 1.45910 1.64634 1.14283 1.08551 1.17633 0.76766 0.85724 0.83359 1.90697 1.53372 1.16488 1.85841 1.20844 1.09107 0.96569 0.95067 1.23142 0.82645 0.89803 0.94544 1.66779 1.18274 1.39131 0.96542 1.19875 0.95841 0.90973 0.88945 1.47362 1.53753 1.14094 1.04712 0.68326 1.81529 1.14933 0.87669 1.13684 1.74758 1.10413 1.20539 1.03428 1.20440 1.13673 0.94516 0.94052 1.21054 0.87098 1.00539 0.87611 0.89603 0.91060 0.94021 0.87242 0.90082 0.93179 0.91430 0.95450 0.78860 0.94077 0.75583 0.79608 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.48 71.98 0.68 -2.49 16 2 C 0.15 3.84 2.57 44.99 0.12 3.96 16 3 H 0.06 1.96 7.58 -2.39 -0.02 1.95 16 4 C -0.12 -2.74 4.43 30.60 0.14 -2.61 16 5 C 0.16 5.07 2.89 44.99 0.13 5.20 16 6 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 7 C -0.15 -4.44 9.49 71.98 0.68 -3.76 16 8 N -0.72 -28.26 3.84 -322.93 -1.24 -29.50 16 9 C -0.21 -10.21 9.93 84.04 0.83 -9.38 16 10 H 0.05 2.74 7.83 -2.91 -0.02 2.71 16 11 C -0.04 -2.09 5.50 84.86 0.47 -1.63 16 12 N -0.92 -44.68 10.69 21.65 0.23 -44.45 16 13 Si 0.92 44.45 29.55 68.60 2.03 46.47 16 14 H -0.31 -15.92 7.11 99.48 0.71 -15.22 16 15 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 16 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 17 N -0.68 -20.93 3.75 -445.52 -1.67 -22.60 16 18 C 0.58 20.93 7.74 86.75 0.67 21.60 16 19 O -0.58 -23.78 16.06 -3.94 -0.06 -23.85 16 20 C -0.21 -7.39 5.88 -20.03 -0.12 -7.51 16 21 C 0.27 9.53 8.98 85.24 0.77 10.29 16 22 N -0.49 -17.50 10.37 -191.99 -1.99 -19.49 16 23 C 0.29 9.90 8.49 134.00 1.14 11.04 16 24 N -0.47 -13.30 7.53 -55.37 -0.42 -13.72 16 25 H 0.47 9.57 8.96 -213.26 -1.91 7.66 16 26 N 0.00 0.15 13.82 37.02 0.51 0.66 16 27 N -0.21 -7.25 12.40 -52.15 -0.65 -7.90 16 28 C -0.10 -3.59 7.27 39.63 0.29 -3.30 16 29 C 0.07 2.39 9.76 22.96 0.22 2.61 16 30 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.38 14.71 5.70 -92.71 -0.53 14.18 16 39 H 0.25 12.59 8.31 -92.70 -0.77 11.82 16 40 H 0.41 12.04 4.54 -92.71 -0.42 11.62 16 41 H 0.19 6.32 5.82 -2.91 -0.02 6.30 16 42 H 0.16 5.38 7.71 -2.91 -0.02 5.36 16 Total: -1.00 -59.80 351.43 0.99 -58.81 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -1.77 Total: 31.52 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 6.02 Total: 24.04 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -5.22 Total: -137.00 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -59.80 0.99 -58.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134623580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.265 kcal (2) G-P(sol) polarization free energy of solvation -59.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds