Wall clock time and date at job start Fri Apr 10 2020 18:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21571 * 120.00048 * 359.97438 * 9 8 5 11 11 C 1.47696 * 119.99916 * 179.97438 * 9 8 5 12 12 C 1.41595 * 120.03325 * 0.02562 * 11 9 8 13 13 C 1.35782 * 119.55119 * 179.97438 * 12 11 9 14 14 C 1.40867 * 119.38877 * 359.97438 * 13 12 11 15 15 N 1.32484 * 133.41817 * 179.97438 * 14 13 12 16 16 N 1.28530 * 110.24591 * 180.02562 * 15 14 13 17 17 N 1.28994 * 110.84300 * 359.97438 * 16 15 14 18 18 N 1.36931 * 119.93014 * 359.97438 * 14 13 12 19 19 C 1.35493 * 120.84415 * 359.74351 * 18 14 13 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 35 35 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 36 36 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.07997 * 120.22394 * 359.94932 * 12 11 9 39 39 H 1.07993 * 120.30896 * 180.02562 * 13 12 11 40 40 H 1.08008 * 119.82617 * 180.25767 * 19 18 14 41 41 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 42 42 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9877 -0.0835 -0.2546 11 6 5.9681 -1.7173 1.4143 12 6 5.2550 -2.7747 2.0294 13 6 5.8101 -3.4362 3.0772 14 6 7.0879 -3.0588 3.5344 15 7 7.8735 -3.4978 4.5067 16 7 8.9664 -2.8219 4.5349 17 7 8.9730 -1.9213 3.6115 18 7 7.7574 -2.0335 2.9217 19 6 7.2091 -1.3748 1.8723 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.7724 -2.2740 -2.6699 35 1 3.6264 -0.6885 -3.4657 36 1 5.1509 -1.1482 -2.6697 37 1 3.6648 -2.0583 0.2386 38 1 4.2761 -3.0528 1.6678 39 1 5.2772 -4.2448 3.5552 40 1 7.7536 -0.5712 1.3986 41 1 2.2490 -1.6318 1.1526 42 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134965513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:06 Heat of formation + Delta-G solvation = 129.616747 kcal Electronic energy + Delta-G solvation = -27798.237163 eV Core-core repulsion = 24010.264543 eV Total energy + Delta-G solvation = -3787.972619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.11947 -40.09305 -38.13831 -37.04876 -34.63715 -33.98232 -32.82372 -31.95917 -30.64886 -30.17931 -28.50277 -26.59568 -25.35390 -24.23318 -23.64124 -22.59379 -21.81885 -20.67592 -20.28084 -18.70109 -17.71259 -17.19738 -17.12986 -16.61354 -16.07282 -15.27899 -14.93660 -14.73286 -14.61406 -14.15914 -13.73117 -13.47662 -13.32154 -13.26512 -13.17388 -12.68009 -12.36951 -12.31482 -12.18819 -11.92459 -11.82312 -11.53608 -11.35094 -11.27113 -10.92425 -10.83193 -10.70481 -10.62221 -10.33229 -10.12797 -9.87081 -9.85644 -9.38610 -9.18448 -8.78910 -8.34398 -7.23826 -6.33390 -3.30765 0.36517 0.77987 1.84543 2.18874 2.93250 3.30848 3.40875 3.43199 3.59524 3.66474 3.92058 4.35197 4.47773 4.62903 4.73217 4.83959 5.05758 5.10097 5.18475 5.24013 5.36764 5.41774 5.53126 5.60975 5.69596 5.75306 5.78669 5.88589 5.94600 5.99762 6.11310 6.14642 6.17480 6.26412 6.28909 6.32853 6.50373 6.60915 6.72239 6.83895 7.59652 7.67064 8.35734 8.47193 8.58068 8.93066 9.77661 9.93541 11.10452 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.005883 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.405851 B = 4758.043326 C = 6372.151886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.052 0.948 4 C -0.136 4.136 5 C 0.150 3.850 6 H 0.088 0.912 7 C -0.164 4.164 8 N -0.688 5.688 9 C 0.583 3.417 10 O -0.547 6.547 11 C -0.137 4.137 12 C 0.007 3.993 13 C -0.079 4.079 14 C 0.256 3.744 15 N -0.333 5.333 16 N -0.013 5.013 17 N -0.125 5.125 18 N -0.305 5.305 19 C 0.161 3.839 20 N -0.727 5.727 21 C -0.305 4.305 22 H 0.064 0.936 23 C -0.041 4.041 24 N -0.932 5.932 25 Si 1.065 2.935 26 H -0.283 1.283 27 H -0.298 1.298 28 H -0.295 1.295 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.400 0.600 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.188 0.812 41 H 0.358 0.642 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -2.407 -10.717 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.070 0.930 4 C -0.174 4.174 5 C 0.046 3.954 6 H 0.106 0.894 7 C -0.222 4.222 8 N -0.340 5.340 9 C 0.368 3.632 10 O -0.426 6.426 11 C -0.146 4.146 12 C -0.021 4.021 13 C -0.102 4.102 14 C 0.004 3.996 15 N -0.194 5.194 16 N -0.006 5.006 17 N -0.109 5.109 18 N -0.082 5.082 19 C 0.030 3.970 20 N -0.371 5.371 21 C -0.436 4.436 22 H 0.082 0.918 23 C -0.238 4.238 24 N -0.580 5.580 25 Si 0.897 3.103 26 H -0.209 1.209 27 H -0.226 1.226 28 H -0.222 1.222 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.173 0.827 39 H 0.186 0.814 40 H 0.205 0.795 41 H 0.193 0.807 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.011 -1.672 -8.511 8.904 hybrid contribution -1.642 -0.018 -1.742 2.394 sum 0.369 -1.690 -10.253 10.398 Atomic orbital electron populations 1.22390 0.98943 1.00769 1.00232 1.20263 0.91836 0.95819 0.85721 0.93027 1.22250 0.93741 1.01713 0.99728 1.20911 0.92598 0.97436 0.84463 0.89354 1.22216 1.01981 1.00970 0.97021 1.45819 1.17126 1.37290 1.33774 1.17357 0.81668 0.82562 0.81590 1.90758 1.62002 1.30435 1.59406 1.19684 0.94081 1.00361 1.00471 1.21283 0.97744 0.90412 0.92644 1.20130 0.89420 1.03456 0.97231 1.23113 0.96426 0.88277 0.91765 1.75115 0.99769 1.25267 1.19278 1.77765 1.13048 0.99062 1.10743 1.82741 0.98251 1.22192 1.07670 1.48629 1.14124 1.23266 1.22215 1.21502 0.93814 0.95912 0.85733 1.42514 1.78939 1.09157 1.06534 1.20086 1.39620 0.95105 0.88816 0.91787 1.25466 0.99863 0.97518 1.00964 1.71152 1.51826 1.07887 1.27089 0.83392 0.76039 0.74677 0.76238 1.20874 1.22556 1.22227 0.94302 0.93651 0.92738 0.91678 0.90274 0.92622 0.91739 0.92161 0.76242 0.82714 0.81357 0.79484 0.80731 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.49 37.16 0.35 -2.12 16 2 C 0.17 2.77 2.89 -67.93 -0.20 2.58 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.14 -1.65 4.43 -26.73 -0.12 -1.77 16 5 C 0.15 1.96 2.57 -67.93 -0.17 1.78 16 6 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 7 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 8 N -0.69 -9.89 3.75 -54.80 -0.21 -10.09 16 9 C 0.58 9.57 7.73 -12.40 -0.10 9.47 16 10 O -0.55 -10.13 15.94 5.30 0.08 -10.05 16 11 C -0.14 -2.18 5.84 -105.33 -0.62 -2.80 16 12 C 0.01 0.10 7.78 -39.18 -0.30 -0.20 16 13 C -0.08 -1.25 10.09 -39.47 -0.40 -1.65 16 14 C 0.26 4.61 8.02 -156.27 -1.25 3.36 16 15 N -0.33 -6.44 12.26 31.10 0.38 -6.06 16 16 N -0.01 -0.25 13.35 60.35 0.81 0.55 16 17 N -0.13 -2.34 13.99 60.35 0.84 -1.50 16 18 N -0.30 -5.40 3.92 -12.05 -0.05 -5.45 16 19 C 0.16 2.58 10.77 -16.51 -0.18 2.41 16 20 N -0.73 -14.08 3.84 -53.43 -0.21 -14.28 16 21 C -0.31 -7.19 9.93 -15.06 -0.15 -7.34 16 22 H 0.06 1.58 7.83 -52.48 -0.41 1.17 16 23 C -0.04 -1.01 5.50 -17.43 -0.10 -1.11 16 24 N -0.93 -22.12 12.23 55.49 0.68 -21.44 16 25 Si 1.07 24.17 29.92 -169.99 -5.09 19.08 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 5.50 4.55 -40.82 -0.19 5.32 16 38 H 0.16 2.20 4.76 -52.49 -0.25 1.95 16 39 H 0.17 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.19 2.70 7.57 -52.48 -0.40 2.30 16 41 H 0.36 6.72 4.54 -40.82 -0.19 6.53 16 42 H 0.25 5.35 4.74 -40.82 -0.19 5.16 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -28.25 347.89 -5.42 -33.67 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.04 Total: 9.08 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.88 Total: 1.23 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 2.25 Total: -58.26 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.09 Total: 19.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.25 -5.42 -33.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134965513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.283 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds