Wall clock time and date at job start Fri Apr 10 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21571 * 120.00048 * 359.97438 * 9 8 5 11 11 C 1.47696 * 119.99916 * 179.97438 * 9 8 5 12 12 C 1.41595 * 120.03325 * 0.02562 * 11 9 8 13 13 C 1.35782 * 119.55119 * 179.97438 * 12 11 9 14 14 C 1.40867 * 119.38877 * 359.97438 * 13 12 11 15 15 N 1.32484 * 133.41817 * 179.97438 * 14 13 12 16 16 N 1.28530 * 110.24591 * 180.02562 * 15 14 13 17 17 N 1.28994 * 110.84300 * 359.97438 * 16 15 14 18 18 N 1.36931 * 119.93014 * 359.97438 * 14 13 12 19 19 C 1.35493 * 120.84415 * 359.74351 * 18 14 13 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 35 35 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 36 36 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.07997 * 120.22394 * 359.94932 * 12 11 9 39 39 H 1.07993 * 120.30896 * 180.02562 * 13 12 11 40 40 H 1.08008 * 119.82617 * 180.25767 * 19 18 14 41 41 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 42 42 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9877 -0.0835 -0.2546 11 6 5.9681 -1.7173 1.4143 12 6 5.2550 -2.7747 2.0294 13 6 5.8101 -3.4362 3.0772 14 6 7.0879 -3.0588 3.5344 15 7 7.8735 -3.4978 4.5067 16 7 8.9664 -2.8219 4.5349 17 7 8.9730 -1.9213 3.6115 18 7 7.7574 -2.0335 2.9217 19 6 7.2091 -1.3748 1.8723 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.7724 -2.2740 -2.6699 35 1 3.6264 -0.6885 -3.4657 36 1 5.1509 -1.1482 -2.6697 37 1 3.6648 -2.0583 0.2386 38 1 4.2761 -3.0528 1.6678 39 1 5.2772 -4.2448 3.5552 40 1 7.7536 -0.5712 1.3986 41 1 2.2490 -1.6318 1.1526 42 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134965513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:05 Heat of formation + Delta-G solvation = 113.176159 kcal Electronic energy + Delta-G solvation = -27798.950080 eV Core-core repulsion = 24010.264543 eV Total energy + Delta-G solvation = -3788.685537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -44.53884 -41.38073 -39.44691 -38.38714 -36.03121 -35.36528 -34.28014 -33.36840 -31.92254 -31.51297 -29.96926 -27.63568 -26.69826 -25.69913 -25.23621 -23.99576 -23.04056 -21.85259 -21.58496 -20.06976 -19.37583 -18.52543 -18.45766 -18.04102 -17.29904 -16.73309 -16.23831 -16.02706 -15.97557 -15.67827 -15.37003 -14.82738 -14.54339 -14.49680 -14.41983 -14.05792 -13.76490 -13.49290 -13.37538 -13.10428 -12.86228 -12.84842 -12.75997 -12.65832 -12.54307 -12.28945 -12.19767 -11.91736 -11.74020 -11.60172 -11.25565 -11.18327 -11.09336 -10.84558 -10.04149 -9.68720 -8.87132 -8.15752 -5.09115 -0.99159 -0.54463 0.47830 0.76745 1.57810 1.58601 1.59381 1.75813 2.08223 2.37361 2.55653 2.68674 3.00960 3.35906 3.47444 3.53559 3.68429 3.75014 3.88091 3.97767 4.10719 4.13591 4.34616 4.46058 4.54736 4.63447 4.69986 4.82547 4.83628 4.85873 4.89315 5.01579 5.06483 5.09122 5.12601 5.18271 5.38020 5.38474 5.56057 5.62459 5.77502 6.44896 6.72358 7.10578 7.12728 7.26508 8.10767 8.25974 9.32290 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.005883 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.405851 B = 4758.043326 C = 6372.151886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.029 0.971 4 C -0.122 4.122 5 C 0.147 3.853 6 H 0.063 0.937 7 C -0.154 4.154 8 N -0.679 5.679 9 C 0.579 3.421 10 O -0.572 6.572 11 C -0.135 4.135 12 C 0.017 3.983 13 C -0.077 4.077 14 C 0.246 3.754 15 N -0.348 5.348 16 N -0.024 5.024 17 N -0.133 5.133 18 N -0.306 5.306 19 C 0.157 3.843 20 N -0.729 5.729 21 C -0.308 4.308 22 H 0.043 0.957 23 C -0.071 4.071 24 N -0.944 5.944 25 Si 1.088 2.912 26 H -0.298 1.298 27 H -0.305 1.305 28 H -0.289 1.289 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.024 0.976 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.404 0.596 38 H 0.170 0.830 39 H 0.187 0.813 40 H 0.201 0.799 41 H 0.362 0.638 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 -3.241 -12.774 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 H 0.047 0.953 4 C -0.160 4.160 5 C 0.043 3.957 6 H 0.082 0.918 7 C -0.212 4.212 8 N -0.330 5.330 9 C 0.364 3.636 10 O -0.453 6.453 11 C -0.144 4.144 12 C -0.010 4.010 13 C -0.101 4.101 14 C -0.005 4.005 15 N -0.210 5.210 16 N -0.017 5.017 17 N -0.117 5.117 18 N -0.083 5.083 19 C 0.026 3.974 20 N -0.373 5.373 21 C -0.440 4.440 22 H 0.061 0.939 23 C -0.267 4.267 24 N -0.593 5.593 25 Si 0.920 3.080 26 H -0.224 1.224 27 H -0.233 1.233 28 H -0.216 1.216 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.242 0.758 38 H 0.187 0.813 39 H 0.205 0.795 40 H 0.218 0.782 41 H 0.197 0.803 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.717 -2.514 -10.598 10.916 hybrid contribution -1.278 0.279 -1.174 1.757 sum -0.560 -2.235 -11.772 11.996 Atomic orbital electron populations 1.22269 0.97884 1.01048 1.00274 1.20436 0.92489 0.94983 0.86261 0.95291 1.22166 0.92730 1.02437 0.98661 1.21051 0.93291 0.96222 0.85143 0.91844 1.22129 1.00970 1.02117 0.96003 1.45867 1.16314 1.37007 1.33848 1.17441 0.82213 0.82344 0.81558 1.90747 1.62777 1.31556 1.60226 1.19794 0.93981 1.00291 1.00323 1.21442 0.98012 0.89601 0.91958 1.20407 0.88622 1.03852 0.97190 1.23403 0.96988 0.88417 0.91707 1.75048 1.00049 1.25819 1.20092 1.77734 1.13383 0.99404 1.11158 1.82679 0.98877 1.22294 1.07839 1.48659 1.13875 1.23349 1.22406 1.21766 0.94110 0.96133 0.85371 1.42475 1.79244 1.09227 1.06384 1.20020 1.39226 0.94387 0.90366 0.93882 1.25764 1.00901 0.98159 1.01877 1.71119 1.52616 1.07630 1.27926 0.83045 0.75913 0.73808 0.75212 1.22402 1.23320 1.21608 0.91342 0.93156 0.95648 0.89943 0.87145 0.90900 0.89568 0.93756 0.75758 0.81299 0.79535 0.78233 0.80278 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.49 71.98 0.68 -3.65 16 2 C 0.17 5.02 2.89 44.99 0.13 5.15 16 3 H 0.03 1.01 8.08 -2.38 -0.02 0.99 16 4 C -0.12 -2.52 4.43 30.60 0.14 -2.38 16 5 C 0.15 3.46 2.57 44.99 0.12 3.58 16 6 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 7 C -0.15 -2.76 9.48 71.98 0.68 -2.08 16 8 N -0.68 -18.22 3.75 -445.55 -1.67 -19.89 16 9 C 0.58 18.38 7.73 86.74 0.67 19.05 16 10 O -0.57 -20.89 15.94 -3.94 -0.06 -20.95 16 11 C -0.14 -4.15 5.84 -20.32 -0.12 -4.27 16 12 C 0.02 0.49 7.78 22.53 0.18 0.67 16 13 C -0.08 -2.34 10.09 22.34 0.23 -2.12 16 14 C 0.25 8.69 8.02 134.16 1.08 9.77 16 15 N -0.35 -13.37 12.26 -55.52 -0.68 -14.05 16 16 N -0.02 -0.92 13.35 37.02 0.49 -0.43 16 17 N -0.13 -4.98 13.99 37.02 0.52 -4.47 16 18 N -0.31 -10.69 3.92 -192.05 -0.75 -11.45 16 19 C 0.16 4.93 10.77 83.75 0.90 5.83 16 20 N -0.73 -27.19 3.84 -322.94 -1.24 -28.43 16 21 C -0.31 -14.37 9.93 84.03 0.83 -13.53 16 22 H 0.04 2.16 7.83 -2.91 -0.02 2.14 16 23 C -0.07 -3.43 5.50 84.86 0.47 -2.96 16 24 N -0.94 -43.58 12.23 21.65 0.26 -43.32 16 25 Si 1.09 49.09 29.92 68.60 2.05 51.14 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.31 -13.95 7.11 99.48 0.71 -13.25 16 28 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.40 10.12 4.55 -92.71 -0.42 9.70 16 38 H 0.17 4.40 4.76 -2.91 -0.01 4.39 16 39 H 0.19 4.92 8.06 -2.91 -0.02 4.90 16 40 H 0.20 5.68 7.57 -2.91 -0.02 5.66 16 41 H 0.36 12.82 4.54 -92.71 -0.42 12.40 16 42 H 0.25 10.61 4.74 -92.71 -0.44 10.17 16 Total: -1.00 -60.64 347.89 5.46 -55.17 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.56 Total: 23.61 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 5.98 Total: 13.06 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -3.07 Total: -122.03 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.05 Total: 51.14 kcal Total: -60.64 5.46 -55.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134965513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.349 kcal (2) G-P(sol) polarization free energy of solvation -60.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds