Wall clock time and date at job start Fri Apr 10 2020 18:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46947 * 2 1 4 4 C 1.52997 * 109.46827 * 240.00277 * 2 1 3 5 5 C 1.53003 * 109.46705 * 174.99920 * 4 2 1 6 6 H 1.09002 * 109.47398 * 304.99859 * 5 4 2 7 7 C 1.53007 * 109.46702 * 184.99886 * 5 4 2 8 8 N 1.46493 * 109.47221 * 65.00137 * 5 4 2 9 9 C 1.36939 * 120.00051 * 204.99622 * 8 5 4 10 10 H 1.07996 * 119.99894 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00017 * 179.97438 * 9 8 5 12 12 N 1.31625 * 119.99923 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00056 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47119 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47352 * 120.00069 * 13 11 9 16 16 H 1.48500 * 109.46768 * 240.00180 * 13 11 9 17 17 N 1.46501 * 109.47192 * 120.00055 * 2 1 3 18 18 C 1.34770 * 120.00146 * 275.00378 * 17 2 1 19 19 O 1.21562 * 120.00004 * 359.97438 * 18 17 2 20 20 C 1.47821 * 119.99967 * 180.02562 * 18 17 2 21 21 C 1.41578 * 120.37301 * 0.02562 * 20 18 17 22 22 C 1.34818 * 120.11220 * 180.02562 * 21 20 18 23 23 N 1.36056 * 120.83198 * 359.96917 * 22 21 20 24 24 N 1.40248 * 133.73436 * 180.02562 * 23 22 21 25 25 N 1.28970 * 107.02315 * 179.97438 * 24 23 22 26 26 N 1.28549 * 110.84263 * 359.97438 * 25 24 23 27 27 C 1.32616 * 110.18234 * 359.97438 * 26 25 24 28 28 C 1.38457 * 120.37162 * 180.02562 * 20 18 17 29 29 H 1.08997 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47090 * 299.99594 * 1 2 3 31 31 H 1.08998 * 109.47235 * 59.99796 * 1 2 3 32 32 H 1.08998 * 109.46991 * 294.99629 * 4 2 1 33 33 H 1.08998 * 109.47172 * 55.00048 * 4 2 1 34 34 H 1.08997 * 109.47492 * 299.99761 * 7 5 4 35 35 H 1.09000 * 109.47161 * 60.00189 * 7 5 4 36 36 H 1.09001 * 109.46635 * 179.97438 * 7 5 4 37 37 H 0.97000 * 120.00108 * 25.00067 * 8 5 4 38 38 H 0.97007 * 119.99353 * 180.02562 * 12 11 9 39 39 H 0.97000 * 119.99522 * 94.99491 * 17 2 1 40 40 H 1.07998 * 119.94403 * 0.02562 * 21 20 18 41 41 H 1.08001 * 119.58536 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.52354 * 0.25130 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.8571 0.4359 -1.2678 7 6 4.0644 -1.2249 -2.6242 8 7 4.1537 -1.3341 -0.1825 9 6 5.3944 -0.9855 0.2805 10 1 5.9386 -0.1789 -0.1880 11 6 5.9521 -1.6683 1.3527 12 7 5.2886 -2.6511 1.9240 13 14 7.6443 -1.1924 1.9848 14 1 8.1756 -0.0655 1.1767 15 1 7.5428 -0.7776 3.4070 16 1 8.5598 -2.3561 1.8726 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0184 2.3571 19 8 1.8583 1.1612 2.4117 20 6 2.6404 -0.7151 3.5639 21 6 2.9805 -2.0883 3.5089 22 6 3.4294 -2.7187 4.6129 23 7 3.5633 -2.0515 5.7910 24 7 3.9926 -2.4243 7.0730 25 7 3.9156 -1.3739 7.8173 26 7 3.4822 -0.3676 7.1449 27 6 3.2483 -0.7232 5.8889 28 6 2.7750 -0.0321 4.7607 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7516 -1.7714 -1.2056 33 1 1.6053 -0.2616 -2.1369 34 1 3.7723 -2.2740 -2.6701 35 1 3.6263 -0.6885 -3.4658 36 1 5.1507 -1.1476 -2.6702 37 1 3.6648 -2.0584 0.2385 38 1 5.6783 -3.1280 2.6735 39 1 2.2490 -1.6318 1.1525 40 1 2.8801 -2.6318 2.5810 41 1 3.6859 -3.7665 4.5614 42 1 2.5177 1.0147 4.8268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135175336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:16 Heat of formation + Delta-G solvation = 125.677347 kcal Electronic energy + Delta-G solvation = -27740.020737 eV Core-core repulsion = 23951.877292 eV Total energy + Delta-G solvation = -3788.143445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.04686 -39.93615 -38.05614 -36.96748 -34.46861 -33.67402 -32.73665 -31.82937 -30.61239 -30.13682 -28.74128 -26.52576 -25.20274 -24.42134 -23.87828 -22.50747 -21.64186 -20.57345 -20.08298 -18.38946 -17.73313 -17.44754 -16.65417 -16.54839 -15.81415 -15.10381 -14.87139 -14.72961 -14.55152 -14.04208 -13.84149 -13.50942 -13.20213 -12.96579 -12.93768 -12.64043 -12.31071 -12.26023 -12.09950 -11.91328 -11.83200 -11.65493 -11.28380 -11.16023 -11.02212 -10.92916 -10.80068 -10.55777 -10.39938 -10.10597 -9.93146 -9.77908 -9.74216 -9.18280 -8.69721 -8.30228 -7.18301 -6.09795 -3.29529 0.36274 0.76892 2.01213 2.40905 2.83507 3.24370 3.28388 3.35903 3.39488 3.75501 4.02611 4.36030 4.39706 4.67626 4.87118 4.92271 5.10807 5.20937 5.27461 5.32886 5.39905 5.50357 5.60047 5.70454 5.75925 5.79412 5.83729 5.92558 5.98095 6.06544 6.10748 6.20316 6.22918 6.25042 6.37245 6.41945 6.67616 6.67883 6.82207 6.91070 7.48880 7.80611 8.12410 8.47866 8.60794 9.25469 9.76660 10.12768 11.12908 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.005861 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.718083 B = 4776.563516 C = 6391.398849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.087 0.913 4 C -0.134 4.134 5 C 0.167 3.833 6 H 0.051 0.949 7 C -0.164 4.164 8 N -0.716 5.716 9 C -0.213 4.213 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.933 5.933 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.294 1.294 16 H -0.292 1.292 17 N -0.685 5.685 18 C 0.572 3.428 19 O -0.544 6.544 20 C -0.057 4.057 21 C -0.051 4.051 22 C 0.097 3.903 23 N -0.283 5.283 24 N -0.127 5.127 25 N -0.022 5.022 26 N -0.327 5.327 27 C 0.227 3.773 28 C -0.041 4.041 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.376 0.624 38 H 0.253 0.747 39 H 0.405 0.595 40 H 0.179 0.821 41 H 0.181 0.819 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 -0.701 -4.626 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.058 3.942 6 H 0.069 0.931 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.344 4.344 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.582 5.582 13 Si 0.730 3.270 14 H -0.206 1.206 15 H -0.222 1.222 16 H -0.219 1.219 17 N -0.338 5.338 18 C 0.358 3.642 19 O -0.422 6.422 20 C -0.069 4.069 21 C -0.075 4.075 22 C -0.031 4.031 23 N -0.062 5.062 24 N -0.110 5.110 25 N -0.015 5.015 26 N -0.190 5.190 27 C -0.025 4.025 28 C -0.066 4.066 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.211 0.789 38 H 0.063 0.937 39 H 0.244 0.756 40 H 0.196 0.804 41 H 0.199 0.801 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.695 -0.036 -3.046 10.162 hybrid contribution 1.195 -0.671 -0.523 1.467 sum -8.500 -0.706 -3.569 9.246 Atomic orbital electron populations 1.22216 0.95835 1.01867 1.02285 1.20905 0.92770 0.97869 0.83995 0.89445 1.22228 0.97715 1.00733 0.96621 1.20336 0.89729 0.96044 0.88137 0.93124 1.22404 1.01606 1.00389 0.97963 1.42501 1.18673 1.39862 1.34870 1.19326 0.92967 1.12436 1.09655 0.91191 1.24454 0.98474 0.98751 0.98943 1.69492 1.37697 1.24768 1.26289 0.86228 0.84582 0.77671 0.78499 1.20636 1.22180 1.21869 1.45875 1.64921 1.14424 1.08536 1.17605 0.77571 0.86136 0.82890 1.90755 1.51099 1.15163 1.85204 1.20358 0.98327 0.94281 0.93942 1.21236 0.95076 0.93353 0.97841 1.21469 1.00872 1.00009 0.80767 1.48913 1.37825 1.09320 1.10142 1.82693 1.25875 1.18479 0.83969 1.77754 1.07500 0.93520 1.22702 1.75120 1.22785 1.21058 1.00054 1.22608 1.00354 0.83824 0.95699 1.20623 0.97413 1.01421 0.87106 0.92634 0.92206 0.91839 0.91562 0.90443 0.93524 0.94431 0.92820 0.78948 0.93659 0.75638 0.80373 0.80147 0.81081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 2 C 0.15 1.92 2.57 -67.93 -0.17 1.75 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 4 C -0.13 -1.60 4.43 -26.73 -0.12 -1.72 16 5 C 0.17 2.60 2.89 -67.93 -0.20 2.41 16 6 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 7 C -0.16 -2.40 9.49 37.16 0.35 -2.05 16 8 N -0.72 -13.52 3.84 -53.42 -0.21 -13.73 16 9 C -0.21 -4.86 9.93 -15.06 -0.15 -5.01 16 10 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -20.83 10.67 55.49 0.59 -20.24 16 13 Si 0.90 20.79 29.55 -169.99 -5.02 15.77 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 N -0.69 -9.78 3.76 -54.76 -0.21 -9.99 16 18 C 0.57 9.45 7.74 -12.34 -0.10 9.35 16 19 O -0.54 -10.24 16.03 5.31 0.09 -10.16 16 20 C -0.06 -0.91 5.90 -104.62 -0.62 -1.53 16 21 C -0.05 -0.75 7.76 -39.52 -0.31 -1.06 16 22 C 0.10 1.45 11.19 -16.89 -0.19 1.26 16 23 N -0.28 -4.95 3.94 -12.43 -0.05 -5.00 16 24 N -0.13 -2.38 13.98 60.35 0.84 -1.54 16 25 N -0.02 -0.43 13.35 60.35 0.81 0.38 16 26 N -0.33 -6.33 12.27 31.04 0.38 -5.95 16 27 C 0.23 4.10 8.02 -156.36 -1.25 2.84 16 28 C -0.04 -0.68 9.70 -38.64 -0.37 -1.05 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.38 6.99 5.70 -40.82 -0.23 6.76 16 38 H 0.25 5.76 8.31 -40.82 -0.34 5.42 16 39 H 0.40 5.55 4.58 -40.82 -0.19 5.37 16 40 H 0.18 2.47 5.88 -52.49 -0.31 2.16 16 41 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.17 2.62 7.67 -52.49 -0.40 2.21 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -27.21 352.16 -5.63 -32.84 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.29 Total: 8.88 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.87 Total: 3.43 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 2.16 Total: -56.06 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.21 -5.63 -32.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135175336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.514 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds