Wall clock time and date at job start Fri Apr 10 2020 18:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46947 * 2 1 4 4 C 1.52997 * 109.46827 * 240.00277 * 2 1 3 5 5 C 1.53003 * 109.46705 * 174.99920 * 4 2 1 6 6 H 1.09002 * 109.47398 * 304.99859 * 5 4 2 7 7 C 1.53007 * 109.46702 * 184.99886 * 5 4 2 8 8 N 1.46493 * 109.47221 * 65.00137 * 5 4 2 9 9 C 1.36939 * 120.00051 * 204.99622 * 8 5 4 10 10 H 1.07996 * 119.99894 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00017 * 179.97438 * 9 8 5 12 12 N 1.31625 * 119.99923 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00056 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47119 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47352 * 120.00069 * 13 11 9 16 16 H 1.48500 * 109.46768 * 240.00180 * 13 11 9 17 17 N 1.46501 * 109.47192 * 120.00055 * 2 1 3 18 18 C 1.34770 * 120.00146 * 275.00378 * 17 2 1 19 19 O 1.21562 * 120.00004 * 359.97438 * 18 17 2 20 20 C 1.47821 * 119.99967 * 180.02562 * 18 17 2 21 21 C 1.41578 * 120.37301 * 0.02562 * 20 18 17 22 22 C 1.34818 * 120.11220 * 180.02562 * 21 20 18 23 23 N 1.36056 * 120.83198 * 359.96917 * 22 21 20 24 24 N 1.40248 * 133.73436 * 180.02562 * 23 22 21 25 25 N 1.28970 * 107.02315 * 179.97438 * 24 23 22 26 26 N 1.28549 * 110.84263 * 359.97438 * 25 24 23 27 27 C 1.32616 * 110.18234 * 359.97438 * 26 25 24 28 28 C 1.38457 * 120.37162 * 180.02562 * 20 18 17 29 29 H 1.08997 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47090 * 299.99594 * 1 2 3 31 31 H 1.08998 * 109.47235 * 59.99796 * 1 2 3 32 32 H 1.08998 * 109.46991 * 294.99629 * 4 2 1 33 33 H 1.08998 * 109.47172 * 55.00048 * 4 2 1 34 34 H 1.08997 * 109.47492 * 299.99761 * 7 5 4 35 35 H 1.09000 * 109.47161 * 60.00189 * 7 5 4 36 36 H 1.09001 * 109.46635 * 179.97438 * 7 5 4 37 37 H 0.97000 * 120.00108 * 25.00067 * 8 5 4 38 38 H 0.97007 * 119.99353 * 180.02562 * 12 11 9 39 39 H 0.97000 * 119.99522 * 94.99491 * 17 2 1 40 40 H 1.07998 * 119.94403 * 0.02562 * 21 20 18 41 41 H 1.08001 * 119.58536 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.52354 * 0.25130 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.8571 0.4359 -1.2678 7 6 4.0644 -1.2249 -2.6242 8 7 4.1537 -1.3341 -0.1825 9 6 5.3944 -0.9855 0.2805 10 1 5.9386 -0.1789 -0.1880 11 6 5.9521 -1.6683 1.3527 12 7 5.2886 -2.6511 1.9240 13 14 7.6443 -1.1924 1.9848 14 1 8.1756 -0.0655 1.1767 15 1 7.5428 -0.7776 3.4070 16 1 8.5598 -2.3561 1.8726 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0184 2.3571 19 8 1.8583 1.1612 2.4117 20 6 2.6404 -0.7151 3.5639 21 6 2.9805 -2.0883 3.5089 22 6 3.4294 -2.7187 4.6129 23 7 3.5633 -2.0515 5.7910 24 7 3.9926 -2.4243 7.0730 25 7 3.9156 -1.3739 7.8173 26 7 3.4822 -0.3676 7.1449 27 6 3.2483 -0.7232 5.8889 28 6 2.7750 -0.0321 4.7607 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7516 -1.7714 -1.2056 33 1 1.6053 -0.2616 -2.1369 34 1 3.7723 -2.2740 -2.6701 35 1 3.6263 -0.6885 -3.4658 36 1 5.1507 -1.1476 -2.6702 37 1 3.6648 -2.0584 0.2385 38 1 5.6783 -3.1280 2.6735 39 1 2.2490 -1.6318 1.1525 40 1 2.8801 -2.6318 2.5810 41 1 3.6859 -3.7665 4.5614 42 1 2.5177 1.0147 4.8268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135175336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:15 Heat of formation + Delta-G solvation = 109.888786 kcal Electronic energy + Delta-G solvation = -27740.705380 eV Core-core repulsion = 23951.877292 eV Total energy + Delta-G solvation = -3788.828088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.45560 -41.21959 -39.35796 -38.27315 -35.83715 -35.05223 -34.19797 -33.24705 -31.86605 -31.48445 -30.15931 -27.54971 -26.50833 -25.81758 -25.49901 -23.87643 -22.85891 -21.74820 -21.37527 -19.73508 -19.10289 -19.03774 -17.96679 -17.90209 -17.08221 -16.64405 -16.17446 -16.05596 -15.83950 -15.53286 -15.31882 -14.87665 -14.36587 -14.27668 -14.20550 -13.99708 -13.67328 -13.53235 -13.28458 -13.17852 -12.95779 -12.94622 -12.74740 -12.63711 -12.59000 -12.25408 -12.23882 -12.14305 -11.65865 -11.59208 -11.36494 -11.16410 -11.07441 -10.84137 -9.93371 -9.62833 -8.77801 -7.89256 -5.03275 -0.95615 -0.58895 0.67042 1.00399 1.38081 1.46877 1.49932 1.50904 1.99792 2.45975 2.57278 2.70628 3.02789 3.43935 3.49007 3.59621 3.78779 3.87765 4.03194 4.13551 4.20701 4.24422 4.45337 4.49872 4.62922 4.64840 4.75361 4.85355 4.91542 4.95477 4.96110 4.99655 5.15849 5.20958 5.23796 5.39080 5.45762 5.48295 5.65272 5.66941 5.74544 6.38754 6.58938 7.16282 7.23022 7.49394 8.17401 8.48620 9.32114 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.005861 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.718083 B = 4776.563516 C = 6391.398849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.063 0.937 4 C -0.121 4.121 5 C 0.161 3.839 6 H 0.031 0.969 7 C -0.155 4.155 8 N -0.716 5.716 9 C -0.210 4.210 10 H 0.052 0.948 11 C -0.035 4.035 12 N -0.924 5.924 13 Si 0.919 3.081 14 H -0.286 1.286 15 H -0.318 1.318 16 H -0.299 1.299 17 N -0.674 5.674 18 C 0.568 3.432 19 O -0.571 6.571 20 C -0.054 4.054 21 C -0.041 4.041 22 C 0.098 3.902 23 N -0.284 5.284 24 N -0.135 5.135 25 N -0.034 5.034 26 N -0.345 5.345 27 C 0.219 3.781 28 C -0.047 4.047 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.378 0.622 38 H 0.250 0.750 39 H 0.409 0.591 40 H 0.194 0.806 41 H 0.210 0.790 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 -1.803 -6.678 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.159 4.159 5 C 0.052 3.948 6 H 0.049 0.951 7 C -0.215 4.215 8 N -0.359 5.359 9 C -0.343 4.343 10 H 0.070 0.930 11 C -0.230 4.230 12 N -0.575 5.575 13 Si 0.755 3.245 14 H -0.212 1.212 15 H -0.247 1.247 16 H -0.227 1.227 17 N -0.326 5.326 18 C 0.354 3.646 19 O -0.452 6.452 20 C -0.066 4.066 21 C -0.065 4.065 22 C -0.029 4.029 23 N -0.063 5.063 24 N -0.119 5.119 25 N -0.027 5.027 26 N -0.208 5.208 27 C -0.033 4.033 28 C -0.071 4.071 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.214 0.786 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.211 0.789 41 H 0.227 0.773 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.490 -1.153 -5.135 12.638 hybrid contribution 1.723 -0.297 0.014 1.749 sum -9.767 -1.451 -5.120 11.123 Atomic orbital electron populations 1.22130 0.93523 1.03082 1.02538 1.21054 0.94492 0.96584 0.83744 0.91883 1.22146 0.94554 1.01976 0.97196 1.20514 0.92264 0.94557 0.87425 0.95094 1.22279 0.99959 1.00977 0.98303 1.42487 1.17472 1.40131 1.35807 1.19254 0.94324 1.11500 1.09182 0.92962 1.24575 0.98675 0.99806 0.99936 1.69464 1.37158 1.24606 1.26305 0.85913 0.84909 0.76924 0.76802 1.21192 1.24707 1.22696 1.45915 1.63818 1.14512 1.08354 1.17707 0.77528 0.85880 0.83529 1.90743 1.52520 1.16324 1.85650 1.20480 0.97699 0.94811 0.93640 1.21400 0.94070 0.92737 0.98264 1.22033 0.99869 1.01207 0.79818 1.49021 1.37591 1.09315 1.10395 1.82613 1.26350 1.18424 0.84504 1.77720 1.08014 0.93764 1.23195 1.75047 1.23516 1.21439 1.00827 1.22744 1.00593 0.84264 0.95661 1.20712 0.97695 1.01819 0.86902 0.90881 0.93936 0.89675 0.89841 0.87330 0.93053 0.91567 0.95491 0.78631 0.94007 0.75120 0.78943 0.77340 0.80492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.48 71.98 0.68 -2.09 16 2 C 0.15 3.37 2.57 44.99 0.12 3.49 16 3 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 4 C -0.12 -2.40 4.43 30.59 0.14 -2.27 16 5 C 0.16 4.63 2.89 45.00 0.13 4.76 16 6 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 7 C -0.16 -4.14 9.49 71.98 0.68 -3.46 16 8 N -0.72 -25.72 3.84 -322.94 -1.24 -26.97 16 9 C -0.21 -9.43 9.93 84.03 0.83 -8.59 16 10 H 0.05 2.51 7.83 -2.91 -0.02 2.49 16 11 C -0.04 -1.64 5.50 84.86 0.47 -1.18 16 12 N -0.92 -39.77 10.67 21.65 0.23 -39.54 16 13 Si 0.92 42.60 29.55 68.60 2.03 44.63 16 14 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 15 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 16 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 17 N -0.67 -17.87 3.76 -445.43 -1.67 -19.54 16 18 C 0.57 18.15 7.74 86.78 0.67 18.83 16 19 O -0.57 -21.36 16.03 -3.91 -0.06 -21.42 16 20 C -0.05 -1.68 5.90 -19.87 -0.12 -1.80 16 21 C -0.04 -1.13 7.76 22.31 0.17 -0.95 16 22 C 0.10 2.75 11.19 83.25 0.93 3.68 16 23 N -0.28 -9.71 3.94 -193.23 -0.76 -10.47 16 24 N -0.14 -5.04 13.98 37.02 0.52 -4.52 16 25 N -0.03 -1.34 13.35 37.02 0.49 -0.85 16 26 N -0.34 -13.43 12.27 -55.72 -0.68 -14.11 16 27 C 0.22 7.84 8.02 134.05 1.07 8.91 16 28 C -0.05 -1.53 9.70 22.88 0.22 -1.31 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.38 13.09 5.70 -92.71 -0.53 12.56 16 38 H 0.25 10.94 8.31 -92.70 -0.77 10.17 16 39 H 0.41 10.09 4.58 -92.71 -0.42 9.66 16 40 H 0.19 4.79 5.88 -2.91 -0.02 4.78 16 41 H 0.21 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.18 5.46 7.67 -2.91 -0.02 5.44 16 Total: -1.00 -58.83 352.16 4.97 -53.86 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.12 Total: 20.89 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 6.00 Total: 18.03 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -3.12 Total: -115.99 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -58.83 4.97 -53.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135175336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.751 kcal (2) G-P(sol) polarization free energy of solvation -58.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds