Wall clock time and date at job start Fri Apr 10 2020 18:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 C 1.53002 * 109.47233 * 175.00027 * 5 4 2 8 8 N 1.46499 * 109.46840 * 294.99527 * 5 4 2 9 9 C 1.34778 * 119.99771 * 155.00060 * 8 5 4 10 10 O 1.21518 * 120.00162 * 0.02562 * 9 8 5 11 11 C 1.48125 * 119.99963 * 180.02562 * 9 8 5 12 12 N 1.33476 * 125.32463 * 0.02840 * 11 9 8 13 13 C 1.32506 * 109.75340 * 179.97438 * 12 11 9 14 14 N 1.33985 * 132.33834 * 180.02562 * 13 12 11 15 15 C 1.31262 * 120.87603 * 179.97438 * 14 13 12 16 16 C 1.40172 * 120.35909 * 0.02583 * 15 14 13 17 17 C 1.35680 * 119.26844 * 359.97438 * 16 15 14 18 18 N 1.36163 * 119.03440 * 359.97438 * 17 16 15 19 19 N 1.31994 * 125.32818 * 179.71884 * 11 9 8 20 20 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 21 21 C 1.36940 * 119.99786 * 274.99596 * 20 2 1 22 22 H 1.07997 * 119.99662 * 359.97438 * 21 20 2 23 23 C 1.38810 * 119.99761 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00070 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99875 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46801 * 119.99944 * 25 23 21 28 28 H 1.48498 * 109.47392 * 240.00422 * 25 23 21 29 29 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 31 31 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 32 32 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 33 33 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 34 34 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 36 36 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 37 37 H 0.96998 * 120.00630 * 335.00662 * 8 5 4 38 38 H 1.08000 * 119.82004 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.36296 * 179.97438 * 16 15 14 40 40 H 1.08000 * 120.48050 * 180.02562 * 17 16 15 41 41 H 0.97003 * 120.00154 * 95.00403 * 20 2 1 42 42 H 0.97002 * 119.99909 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0852 -1.4384 -2.4925 8 7 3.9480 0.7892 -1.4925 9 6 5.1612 1.2133 -1.0867 10 8 5.9375 0.4322 -0.5729 11 6 5.5485 2.6317 -1.2669 12 7 4.7824 3.5771 -1.8155 13 6 5.4320 4.7320 -1.8218 14 7 5.0959 5.9540 -2.2565 15 6 5.9314 6.9607 -2.1488 16 6 7.1963 6.7732 -1.5747 17 6 7.5473 5.5399 -1.1311 18 7 6.6590 4.5154 -1.2553 19 7 6.7028 3.1596 -0.9050 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6122 -0.6618 3.5090 24 7 2.9261 -1.9386 3.4497 25 14 2.7913 0.2702 5.1179 26 1 2.3763 1.6824 4.9208 27 1 1.9309 -0.3582 6.1524 28 1 4.2084 0.2274 5.5598 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6055 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 5.1715 -1.3620 -2.5381 35 1 3.8001 -2.4820 -2.3595 36 1 3.6546 -1.0595 -3.4193 37 1 3.3286 1.4128 -1.9028 38 1 5.6426 7.9387 -2.5045 39 1 7.8839 7.6013 -1.4865 40 1 8.5167 5.3735 -0.6851 41 1 2.2490 -1.6319 1.1526 42 1 3.2500 -2.3958 4.2415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135714799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:20 Heat of formation + Delta-G solvation = 87.864362 kcal Electronic energy + Delta-G solvation = -26403.335741 eV Core-core repulsion = 22613.552603 eV Total energy + Delta-G solvation = -3789.783139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.12457 -41.13047 -39.68096 -38.35881 -36.20728 -35.72851 -34.09001 -32.82693 -32.08540 -31.71941 -30.43283 -27.63645 -26.94487 -25.70770 -25.48301 -24.40110 -22.51914 -21.71994 -21.24777 -19.82598 -19.35935 -19.23035 -18.43431 -17.95786 -17.33384 -16.91959 -16.65663 -16.14498 -15.71252 -15.58129 -15.46221 -15.21329 -14.55847 -14.37017 -14.25077 -13.90144 -13.89811 -13.62953 -13.41535 -13.27273 -13.17353 -12.99267 -12.82691 -12.69226 -12.30513 -12.18405 -11.87184 -11.73454 -11.60184 -11.51948 -11.45545 -11.10086 -10.98991 -10.94637 -10.19691 -10.06421 -8.96271 -7.94255 -5.19270 -0.72612 -0.50264 0.58011 0.60167 1.38289 1.40696 1.48753 1.63826 1.95562 2.17014 2.33306 2.53402 2.90418 3.26793 3.39776 3.47112 3.78573 3.95312 4.00205 4.08566 4.23126 4.35822 4.37573 4.45118 4.51183 4.66652 4.78177 4.79065 4.82989 4.90294 4.96394 5.01336 5.10056 5.18030 5.22011 5.32204 5.35307 5.46081 5.54257 5.62587 6.11840 6.29645 6.31480 6.57952 6.94350 7.35352 8.15079 8.36227 9.29567 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.003857 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.640562 B = 7257.680788 C = 8308.562819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.034 0.966 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.057 0.943 7 C -0.152 4.152 8 N -0.673 5.673 9 C 0.604 3.396 10 O -0.548 6.548 11 C 0.229 3.771 12 N -0.525 5.525 13 C 0.424 3.576 14 N -0.483 5.483 15 C 0.220 3.780 16 C -0.174 4.174 17 C 0.137 3.863 18 N -0.331 5.331 19 N -0.304 5.304 20 N -0.730 5.730 21 C -0.227 4.227 22 H 0.064 0.936 23 C -0.075 4.075 24 N -0.966 5.966 25 Si 0.959 3.041 26 H -0.272 1.272 27 H -0.287 1.287 28 H -0.300 1.300 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.417 0.583 38 H 0.248 0.752 39 H 0.239 0.761 40 H 0.213 0.787 41 H 0.373 0.627 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 21.478 -18.300 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.052 0.948 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.075 0.925 7 C -0.210 4.210 8 N -0.324 5.324 9 C 0.385 3.615 10 O -0.423 6.423 11 C -0.055 4.055 12 N -0.261 5.261 13 C 0.064 3.936 14 N -0.200 5.200 15 C 0.037 3.963 16 C -0.198 4.198 17 C 0.003 3.997 18 N -0.112 5.112 19 N -0.140 5.140 20 N -0.371 5.371 21 C -0.360 4.360 22 H 0.082 0.918 23 C -0.267 4.267 24 N -0.617 5.617 25 Si 0.789 3.211 26 H -0.196 1.196 27 H -0.214 1.214 28 H -0.227 1.227 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.255 0.745 38 H 0.264 0.736 39 H 0.255 0.745 40 H 0.230 0.770 41 H 0.205 0.795 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.249 20.315 -17.944 28.058 hybrid contribution 0.855 0.038 1.655 1.863 sum 8.104 20.353 -16.289 27.300 Atomic orbital electron populations 1.22278 0.97364 1.01117 1.00648 1.20526 0.92975 0.94954 0.86234 0.94814 1.22103 0.92024 1.02886 0.98532 1.21124 0.96384 0.79129 0.99325 0.92503 1.22106 1.00526 1.00606 0.97751 1.45666 1.14483 1.12537 1.59739 1.16558 0.83410 0.82758 0.78823 1.90831 1.52575 1.54751 1.44160 1.23969 0.89178 0.96109 0.96261 1.70653 1.30618 0.97119 1.27714 1.22928 0.82005 0.94318 0.94349 1.68256 1.35326 0.95199 1.21238 1.24834 0.87873 0.97944 0.85643 1.22800 1.00042 0.96713 1.00200 1.23267 0.96167 0.84278 0.95972 1.49084 1.15290 1.08168 1.38690 1.78768 1.21181 0.87190 1.26859 1.42578 1.78258 1.10151 1.06122 1.19501 1.34200 0.93615 0.88648 0.91804 1.25396 1.03432 0.96887 1.01035 1.69794 1.52941 1.09943 1.29029 0.85275 0.76637 0.78198 0.80982 1.19646 1.21376 1.22741 0.93352 0.95301 0.90604 0.87416 0.89297 0.94177 0.90004 0.89818 0.74498 0.73637 0.74496 0.77010 0.79533 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.49 71.98 0.68 -4.72 16 2 C 0.16 6.39 2.84 44.99 0.13 6.52 16 3 H 0.03 1.43 7.56 -2.39 -0.02 1.41 16 4 C -0.12 -3.58 4.29 30.60 0.13 -3.45 16 5 C 0.14 5.02 2.52 44.99 0.11 5.13 16 6 H 0.06 2.63 7.05 -2.39 -0.02 2.62 16 7 C -0.15 -4.25 9.48 71.98 0.68 -3.56 16 8 N -0.67 -23.61 4.45 -445.14 -1.98 -25.59 16 9 C 0.60 25.22 7.81 86.87 0.68 25.90 16 10 O -0.55 -27.22 16.73 -3.77 -0.06 -27.28 16 11 C 0.23 8.83 7.92 137.39 1.09 9.91 16 12 N -0.53 -18.34 10.89 -192.61 -2.10 -20.44 16 13 C 0.42 12.15 8.98 261.57 2.35 14.50 16 14 N -0.48 -9.72 10.48 -197.53 -2.07 -11.79 16 15 C 0.22 1.26 11.27 85.25 0.96 2.22 16 16 C -0.17 -0.29 10.06 22.15 0.22 -0.07 16 17 C 0.14 1.58 11.32 83.43 0.94 2.52 16 18 N -0.33 -8.67 3.91 -197.58 -0.77 -9.45 16 19 N -0.30 -11.14 12.78 -52.60 -0.67 -11.81 16 20 N -0.73 -38.04 4.49 -322.93 -1.45 -39.49 16 21 C -0.23 -13.43 9.93 84.03 0.83 -12.59 16 22 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 23 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 24 N -0.97 -62.39 13.06 21.65 0.28 -62.11 16 25 Si 0.96 49.85 29.55 68.60 2.03 51.88 16 26 H -0.27 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 28 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.42 12.73 8.27 -92.71 -0.77 11.96 16 38 H 0.25 -1.44 8.06 -2.91 -0.02 -1.46 16 39 H 0.24 -2.45 8.06 -2.91 -0.02 -2.48 16 40 H 0.21 1.05 8.06 -2.91 -0.02 1.02 16 41 H 0.37 20.77 7.80 -92.71 -0.72 20.04 16 42 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -95.11 365.20 2.06 -93.05 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.42 Total: 24.86 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: 9.28 Total: 38.16 kcal Atomic # 7 Polarization: -171.91 SS G_CDS: -8.76 Total: -180.67 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.06 Total: -27.28 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.03 Total: 51.88 kcal Total: -95.11 2.06 -93.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135714799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.911 kcal (2) G-P(sol) polarization free energy of solvation -95.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds