Wall clock time and date at job start Fri Apr 10 2020 18:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.53001 * 109.47035 * 185.00124 * 5 4 2 8 8 N 1.46501 * 109.47107 * 65.00275 * 5 4 2 9 9 C 1.34770 * 119.99608 * 205.00170 * 8 5 4 10 10 O 1.21523 * 120.00390 * 359.97438 * 9 8 5 11 11 C 1.48134 * 119.99808 * 179.97438 * 9 8 5 12 12 N 1.33469 * 125.32252 * 0.02692 * 11 9 8 13 13 C 1.32495 * 109.75244 * 180.02562 * 12 11 9 14 14 N 1.33989 * 132.34169 * 180.02562 * 13 12 11 15 15 C 1.31263 * 120.88139 * 179.97438 * 14 13 12 16 16 C 1.40172 * 120.35489 * 359.97438 * 15 14 13 17 17 C 1.35682 * 119.27254 * 359.97438 * 16 15 14 18 18 N 1.36170 * 119.03179 * 0.02562 * 17 16 15 19 19 N 1.31991 * 125.32276 * 179.71441 * 11 9 8 20 20 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 21 21 C 1.36932 * 120.00140 * 84.99833 * 20 2 1 22 22 H 1.07994 * 120.00447 * 359.97438 * 21 20 2 23 23 C 1.38813 * 119.99838 * 180.02562 * 21 20 2 24 24 N 1.31626 * 119.99987 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00034 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47441 * 90.00299 * 25 23 21 27 27 H 1.48506 * 109.47002 * 209.99992 * 25 23 21 28 28 H 1.48492 * 109.47324 * 330.00247 * 25 23 21 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 33 33 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 34 34 H 1.08997 * 109.46835 * 300.00228 * 7 5 4 35 35 H 1.09001 * 109.47061 * 60.00142 * 7 5 4 36 36 H 1.09000 * 109.46883 * 179.97438 * 7 5 4 37 37 H 0.97001 * 119.99978 * 24.99531 * 8 5 4 38 38 H 1.07994 * 119.82054 * 179.97438 * 15 14 13 39 39 H 1.07994 * 120.36407 * 180.02562 * 16 15 14 40 40 H 1.08000 * 120.48452 * 179.97438 * 17 16 15 41 41 H 0.97005 * 119.99374 * 264.99912 * 20 2 1 42 42 H 0.97001 * 119.99601 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9921 0.3867 7 6 4.0852 -1.4383 2.4924 8 7 3.9480 0.7894 1.4925 9 6 5.1611 1.2136 1.0868 10 8 5.9374 0.4325 0.5730 11 6 5.5483 2.6320 1.2671 12 7 4.7826 3.5771 1.8166 13 6 5.4319 4.7320 1.8227 14 7 5.0963 5.9537 2.2589 15 6 5.9318 6.9604 2.1515 16 6 7.1962 6.7733 1.5761 17 6 7.5471 5.5402 1.1319 18 7 6.6592 4.5154 1.2569 19 7 6.7066 3.1576 0.9148 20 7 2.0184 -0.6905 -1.1962 21 6 2.1492 -0.0073 -2.3757 22 1 1.8920 1.0405 -2.4243 23 6 2.6114 -0.6617 -3.5093 24 7 2.7367 -0.0051 -4.6432 25 14 3.0557 -2.4741 -3.4255 26 1 1.8584 -3.2926 -3.7444 27 1 4.1308 -2.7661 -4.4075 28 1 3.5312 -2.8045 -2.0581 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.6546 -1.0594 3.4192 35 1 3.8002 -2.4819 2.3593 36 1 5.1716 -1.3617 2.5380 37 1 3.3284 1.4129 1.9029 38 1 5.6434 7.9380 2.5084 39 1 7.8838 7.6014 1.4880 40 1 8.5161 5.3741 0.6850 41 1 2.2491 -1.6317 -1.1527 42 1 3.0600 -0.4624 -5.4352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135714800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:23 Heat of formation + Delta-G solvation = 119.834666 kcal Electronic energy + Delta-G solvation = -26448.722237 eV Core-core repulsion = 22660.325434 eV Total energy + Delta-G solvation = -3788.396802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.18755 -39.88090 -38.76595 -36.93772 -34.94397 -34.59444 -32.25192 -31.78675 -31.04012 -30.63371 -29.17306 -26.42665 -25.97151 -24.70017 -23.53534 -23.20920 -21.26553 -20.41616 -19.79136 -18.88386 -18.46174 -17.72129 -17.29576 -16.96328 -16.32099 -15.93482 -14.93711 -14.92479 -14.66401 -14.21970 -13.90484 -13.70898 -13.57014 -13.22524 -13.02708 -12.90899 -12.60936 -12.41394 -12.31185 -12.09789 -11.92393 -11.67103 -11.22081 -10.88261 -10.62088 -10.60942 -10.45824 -10.42179 -10.23497 -10.10261 -10.06922 -9.90304 -9.49388 -9.19972 -8.86705 -8.84020 -7.17479 -5.67507 -3.02233 -0.02068 0.28043 1.43433 1.66898 2.72212 2.90809 3.09216 3.41238 3.45854 3.48436 3.53579 3.81141 3.86670 4.26824 4.44886 4.68636 4.71907 4.87348 5.01505 5.27516 5.33158 5.33993 5.55600 5.62626 5.64359 5.71242 5.79763 5.80901 5.84295 5.91798 6.05574 6.24132 6.26357 6.37093 6.49208 6.52116 6.67550 6.87963 7.00431 7.05659 7.35739 7.70060 8.08563 8.25924 8.51435 9.30292 10.02930 10.22193 11.51271 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013655 B = 0.003640 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.982945 B = 7690.035859 C = 8230.247087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.174 3.826 3 H 0.056 0.944 4 C -0.134 4.134 5 C 0.143 3.857 6 H 0.104 0.896 7 C -0.163 4.163 8 N -0.687 5.687 9 C 0.611 3.389 10 O -0.500 6.500 11 C 0.250 3.750 12 N -0.497 5.497 13 C 0.441 3.559 14 N -0.449 5.449 15 C 0.208 3.792 16 C -0.222 4.222 17 C 0.175 3.825 18 N -0.329 5.329 19 N -0.266 5.266 20 N -0.746 5.746 21 C -0.237 4.237 22 H 0.087 0.913 23 C 0.004 3.996 24 N -0.936 5.936 25 Si 0.883 3.117 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.276 1.276 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.409 0.591 38 H 0.193 0.807 39 H 0.177 0.823 40 H 0.186 0.814 41 H 0.360 0.640 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 13.424 19.211 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.065 3.935 3 H 0.074 0.926 4 C -0.173 4.173 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.221 4.221 8 N -0.339 5.339 9 C 0.390 3.610 10 O -0.371 6.371 11 C -0.034 4.034 12 N -0.231 5.231 13 C 0.080 3.920 14 N -0.163 5.163 15 C 0.021 3.979 16 C -0.247 4.247 17 C 0.038 3.962 18 N -0.110 5.110 19 N -0.099 5.099 20 N -0.389 5.389 21 C -0.367 4.367 22 H 0.105 0.895 23 C -0.191 4.191 24 N -0.584 5.584 25 Si 0.714 3.286 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.202 1.202 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.245 0.755 38 H 0.209 0.791 39 H 0.194 0.806 40 H 0.203 0.797 41 H 0.192 0.808 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.749 12.207 18.767 23.691 hybrid contribution 0.907 -0.593 -0.370 1.145 sum 8.655 11.614 18.397 23.415 Atomic orbital electron populations 1.22402 0.98813 1.00801 1.00438 1.20231 0.91940 0.95959 0.85408 0.92616 1.22228 0.93254 1.02357 0.99456 1.21173 0.95615 0.79225 1.00076 0.87798 1.22208 1.01747 1.00120 0.98063 1.45681 1.15224 1.12148 1.60892 1.16234 0.83189 0.82186 0.79351 1.90870 1.51180 1.53251 1.41817 1.24370 0.88187 0.96487 0.94383 1.70825 1.29670 0.96238 1.26325 1.22693 0.81757 0.93726 0.93834 1.68089 1.33254 0.95593 1.19359 1.23655 0.88171 0.97573 0.88545 1.22002 1.00425 0.97050 1.05254 1.22256 0.95330 0.84419 0.94175 1.49056 1.14342 1.08703 1.38912 1.78994 1.20695 0.84486 1.25726 1.42781 1.79620 1.09332 1.07179 1.19021 1.36647 0.95443 0.85560 0.89485 1.24643 1.01448 0.97444 0.95584 1.69706 1.52965 1.35521 1.00256 0.86559 0.77940 0.86944 0.77191 1.21286 1.21872 1.20165 0.93621 0.94219 0.92430 0.91147 0.90344 0.92555 0.91429 0.92293 0.75505 0.79062 0.80595 0.79720 0.80753 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.30 2.84 -67.93 -0.19 3.11 16 3 H 0.06 1.14 7.56 -51.93 -0.39 0.75 16 4 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 5 C 0.14 2.29 2.52 -67.93 -0.17 2.12 16 6 H 0.10 2.10 7.05 -51.93 -0.37 1.73 16 7 C -0.16 -2.15 9.48 37.16 0.35 -1.79 16 8 N -0.69 -11.19 4.45 -54.66 -0.24 -11.43 16 9 C 0.61 11.63 7.81 -12.20 -0.10 11.53 16 10 O -0.50 -11.12 16.73 5.35 0.09 -11.03 16 11 C 0.25 4.49 7.92 -156.78 -1.24 3.25 16 12 N -0.50 -8.30 10.89 -12.23 -0.13 -8.44 16 13 C 0.44 6.37 8.98 -323.04 -2.90 3.46 16 14 N -0.45 -5.04 10.48 -13.79 -0.14 -5.18 16 15 C 0.21 1.13 11.27 -17.07 -0.19 0.94 16 16 C -0.22 -0.84 10.06 -39.77 -0.40 -1.24 16 17 C 0.18 1.27 11.32 -16.54 -0.19 1.08 16 18 N -0.33 -4.36 3.91 -13.80 -0.05 -4.41 16 19 N -0.27 -4.59 12.78 32.02 0.41 -4.18 16 20 N -0.75 -17.79 4.30 -53.43 -0.23 -18.02 16 21 C -0.24 -6.87 10.41 -15.06 -0.16 -7.03 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 23 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 24 N -0.94 -30.56 13.97 55.49 0.78 -29.79 16 25 Si 0.88 23.15 27.73 -169.99 -4.71 18.43 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 28 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.41 5.90 8.27 -40.82 -0.34 5.56 16 38 H 0.19 0.15 8.06 -52.49 -0.42 -0.28 16 39 H 0.18 -0.14 8.06 -52.49 -0.42 -0.56 16 40 H 0.19 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.36 8.46 5.66 -40.82 -0.23 8.23 16 42 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -40.09 362.09 -9.40 -49.49 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.57 Total: 8.23 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: -5.05 Total: 10.86 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: 0.38 Total: -81.45 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.71 Total: 18.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.09 -9.40 -49.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135714800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.329 kcal (2) G-P(sol) polarization free energy of solvation -40.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds