Wall clock time and date at job start Fri Apr 10 2020 18:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.46978 * 2 1 4 4 O 1.21278 * 120.00057 * 359.70680 * 3 2 1 5 5 N 1.34780 * 119.99725 * 179.71102 * 3 2 1 6 6 C 1.46498 * 119.99744 * 4.97530 * 5 3 2 7 7 C 1.50699 * 109.47326 * 95.21068 * 6 5 3 8 8 C 1.38233 * 119.99863 * 264.96515 * 7 6 5 9 9 C 1.38241 * 119.99983 * 179.76690 * 8 7 6 10 10 C 1.38230 * 119.99825 * 0.50455 * 9 8 7 11 11 C 1.38239 * 120.00028 * 359.74449 * 10 9 8 12 12 C 1.38228 * 120.00093 * 0.02562 * 11 10 9 13 13 C 1.46501 * 119.99974 * 184.97144 * 5 3 2 14 14 C 1.52998 * 109.46609 * 89.80815 * 13 5 3 15 15 O 1.42897 * 113.41465 * 48.98944 * 14 13 5 16 16 C 1.53502 * 114.20455 * 182.18385 * 14 13 5 17 17 N 1.47064 * 87.98610 * 87.52113 * 16 14 13 18 18 C 1.36932 * 136.06096 * 207.08148 * 17 16 14 19 19 H 1.07999 * 119.99673 * 10.64509 * 18 17 16 20 20 C 1.38812 * 120.00212 * 190.63603 * 18 17 16 21 21 N 1.31614 * 119.99799 * 15.88000 * 20 18 17 22 22 Si 1.86803 * 120.00179 * 196.15598 * 20 18 17 23 23 H 1.48496 * 109.47267 * 179.72731 * 22 20 18 24 24 H 1.48504 * 109.46696 * 299.72746 * 22 20 18 25 25 H 1.48499 * 109.47101 * 59.72273 * 22 20 18 26 26 C 1.47071 * 87.88380 * 27.34331 * 17 16 14 27 27 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47123 * 300.00202 * 1 2 3 29 29 H 1.08999 * 109.46644 * 60.00306 * 1 2 3 30 30 H 1.09001 * 109.46849 * 239.99576 * 2 1 3 31 31 H 1.08999 * 109.46644 * 119.99694 * 2 1 3 32 32 H 1.09004 * 109.47037 * 215.20721 * 6 5 3 33 33 H 1.08994 * 109.47257 * 335.20548 * 6 5 3 34 34 H 1.08001 * 120.00160 * 359.97438 * 8 7 6 35 35 H 1.07995 * 120.00163 * 180.22519 * 9 8 7 36 36 H 1.07997 * 120.00270 * 179.72356 * 10 9 8 37 37 H 1.08006 * 119.99957 * 179.97438 * 11 10 9 38 38 H 1.08005 * 120.00071 * 179.97438 * 12 11 10 39 39 H 1.09005 * 109.46877 * 329.81189 * 13 5 3 40 40 H 1.09000 * 109.47029 * 209.81148 * 13 5 3 41 41 H 0.96697 * 114.00146 * 307.03770 * 15 14 13 42 42 H 1.09000 * 113.46311 * 332.74391 * 16 14 13 43 43 H 1.08995 * 113.52177 * 202.31431 * 16 14 13 44 44 H 0.97000 * 120.00121 * 5.93804 * 21 20 18 45 45 H 1.09005 * 113.46728 * 87.43553 * 26 17 16 46 46 H 1.09002 * 113.46756 * 217.87732 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0054 5 7 3.3575 1.6671 0.0059 6 6 4.3090 0.5580 -0.0978 7 6 4.7177 0.3796 -1.5373 8 6 4.0634 -0.5427 -2.3322 9 6 4.4350 -0.7030 -3.6541 10 6 5.4680 0.0516 -4.1779 11 6 6.1257 0.9703 -3.3815 12 6 5.7509 1.1340 -2.0611 13 6 3.8462 3.0438 0.1158 14 6 4.0277 3.4040 1.5917 15 8 4.7595 2.4233 2.3297 16 6 4.4884 4.8479 1.8350 17 7 3.0726 5.2456 1.8300 18 6 2.3687 6.3821 1.5337 19 1 2.8622 7.2123 1.0505 20 6 1.0207 6.4671 1.8541 21 7 0.4916 5.6137 2.7050 22 14 -0.0439 7.7876 1.0717 23 1 -1.4367 7.6609 1.5711 24 1 0.4891 9.1276 1.4263 25 1 -0.0304 7.6243 -0.4042 26 6 2.7459 3.8873 2.2898 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.1900 0.7776 0.5055 33 1 3.8406 -0.3576 0.2631 34 1 3.2595 -1.1357 -1.9216 35 1 3.9214 -1.4210 -4.2762 36 1 5.7613 -0.0767 -5.2093 37 1 6.9331 1.5596 -3.7907 38 1 6.2651 1.8514 -1.4387 39 1 3.1242 3.7229 -0.3378 40 1 4.8022 3.1322 -0.4001 41 1 4.4080 1.5263 2.2478 42 1 5.0598 5.2666 1.0065 43 1 4.9765 4.9922 2.7988 44 1 1.0585 4.9812 3.1734 45 1 2.7743 3.7775 3.3740 46 1 1.8326 3.4877 1.8489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177500082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:35 Heat of formation + Delta-G solvation = 6.875787 kcal Electronic energy + Delta-G solvation = -28025.160201 eV Core-core repulsion = 24303.112727 eV Total energy + Delta-G solvation = -3722.047475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.46125 -39.17316 -38.46942 -35.72623 -34.70922 -32.82199 -32.07225 -31.54612 -31.08690 -28.37381 -26.47842 -26.13139 -24.86829 -23.66145 -22.73382 -22.04511 -21.73732 -19.15595 -18.80164 -17.46146 -17.27748 -17.13555 -16.25793 -16.15347 -15.43864 -15.24656 -15.10439 -14.35254 -14.07693 -13.85868 -13.70652 -13.60780 -13.57879 -13.26002 -12.92416 -12.76099 -12.50590 -12.32202 -12.19328 -11.82268 -11.77059 -11.61500 -11.45292 -11.23412 -11.10926 -10.96304 -10.75039 -10.62344 -10.09913 -9.92649 -9.50010 -9.40849 -9.11402 -9.03354 -8.95832 -8.71291 -8.35025 -6.91787 -6.00007 -3.05079 1.08948 1.20718 2.86908 3.06285 3.54355 3.61339 3.67188 3.77494 4.42657 4.51807 4.57673 4.63307 4.74191 4.77673 4.84644 4.93280 5.05627 5.12733 5.16814 5.19363 5.24631 5.31756 5.38161 5.50310 5.53994 5.67951 5.70770 5.78556 5.80554 5.84728 6.00256 6.22008 6.25869 6.30836 6.32442 6.35908 6.40775 6.48688 6.51863 6.68038 6.79062 6.94089 6.96878 7.38898 7.50861 8.01319 8.39549 8.45635 9.01955 9.87523 10.58925 11.40692 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.004192 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.845418 B = 6678.095801 C = 7095.515469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.502 3.498 4 O -0.500 6.500 5 N -0.614 5.614 6 C 0.140 3.860 7 C -0.102 4.102 8 C -0.110 4.110 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.120 4.120 12 C -0.102 4.102 13 C 0.126 3.874 14 C 0.057 3.943 15 O -0.553 6.553 16 C 0.137 3.863 17 N -0.605 5.605 18 C -0.317 4.317 19 H 0.073 0.927 20 C -0.026 4.026 21 N -0.927 5.927 22 Si 1.077 2.923 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.109 3.891 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.362 0.638 42 H 0.046 0.954 43 H 0.040 0.960 44 H 0.266 0.734 45 H 0.030 0.970 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.954 -17.923 -10.695 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.185 4.185 3 C 0.290 3.710 4 O -0.373 6.373 5 N -0.349 5.349 6 C 0.017 3.983 7 C -0.104 4.104 8 C -0.128 4.128 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.138 4.138 12 C -0.121 4.121 13 C 0.003 3.997 14 C 0.014 3.986 15 O -0.357 6.357 16 C 0.010 3.990 17 N -0.333 5.333 18 C -0.444 4.444 19 H 0.091 0.909 20 C -0.227 4.227 21 N -0.568 5.568 22 Si 0.907 3.093 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.220 1.220 26 C -0.017 4.017 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.209 0.791 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.144 -16.053 -10.710 20.946 hybrid contribution 1.537 -1.024 0.067 1.848 sum 9.681 -17.076 -10.644 22.330 Atomic orbital electron populations 1.21544 0.92962 1.01207 1.03876 1.21761 0.98799 0.94329 1.03585 1.20835 0.81874 0.91879 0.76411 1.90869 1.54145 1.46030 1.46219 1.48017 1.05544 1.07017 1.74282 1.20623 0.94262 0.90775 0.92598 1.20272 0.96445 0.96858 0.96796 1.21112 0.99280 0.98357 0.94089 1.21133 0.97576 0.99842 0.95414 1.21169 0.96391 0.96494 0.99728 1.21173 1.00068 0.98446 0.94093 1.21124 0.96796 0.98527 0.95626 1.21604 1.00584 0.82463 0.95036 1.23901 0.95181 0.88668 0.90811 1.86499 1.57243 1.19565 1.72416 1.22292 0.89719 0.88233 0.98745 1.45458 1.00491 1.09195 1.78202 1.19658 0.94306 0.93258 1.37157 0.90880 1.25807 0.95110 1.03244 0.98532 1.70728 1.38779 1.22181 1.25151 0.83348 0.76351 0.74072 0.75562 1.20945 1.22162 1.22000 1.22993 0.96325 0.86219 0.96156 0.92376 0.91570 0.91977 0.89416 0.89159 0.88856 0.89169 0.86041 0.86109 0.86221 0.86033 0.85870 0.87475 0.90764 0.79149 0.93612 0.94233 0.92273 0.95217 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.20 37.16 0.34 -1.35 16 2 C -0.14 -1.62 4.81 -27.88 -0.13 -1.75 16 3 C 0.50 8.12 7.57 -10.98 -0.08 8.03 16 4 O -0.50 -11.11 13.68 5.56 0.08 -11.03 16 5 N -0.61 -8.65 2.03 -175.06 -0.36 -9.01 16 6 C 0.14 1.37 4.55 -5.20 -0.02 1.35 16 7 C -0.10 -1.03 5.46 -104.62 -0.57 -1.60 16 8 C -0.11 -1.01 9.36 -39.58 -0.37 -1.38 16 9 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 10 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 11 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 12 C -0.10 -1.05 9.32 -39.58 -0.37 -1.42 16 13 C 0.13 2.19 5.15 -4.04 -0.02 2.17 16 14 C 0.06 1.12 1.85 -89.97 -0.17 0.96 16 15 O -0.55 -9.35 12.99 -35.23 -0.46 -9.80 16 16 C 0.14 3.05 8.10 -8.51 -0.07 2.99 16 17 N -0.60 -16.46 3.47 -184.58 -0.64 -17.10 16 18 C -0.32 -9.51 10.67 -15.06 -0.16 -9.67 16 19 H 0.07 2.12 7.88 -52.49 -0.41 1.71 16 20 C -0.03 -0.81 5.46 -17.43 -0.10 -0.90 16 21 N -0.93 -30.24 13.37 55.49 0.74 -29.50 16 22 Si 1.08 27.16 29.95 -169.99 -5.09 22.07 16 23 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.11 2.74 5.53 -8.37 -0.05 2.69 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 29 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.09 0.77 5.64 -51.93 -0.29 0.48 16 31 H 0.09 0.80 7.60 -51.93 -0.39 0.40 16 32 H 0.09 0.85 6.90 -51.93 -0.36 0.49 16 33 H 0.09 0.66 6.16 -51.93 -0.32 0.34 16 34 H 0.12 0.90 6.08 -52.49 -0.32 0.58 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.12 1.20 7.43 -52.48 -0.39 0.81 16 39 H 0.11 2.37 7.15 -51.93 -0.37 2.00 16 40 H 0.07 1.12 7.01 -51.93 -0.36 0.76 16 41 H 0.36 4.85 6.96 45.56 0.32 5.17 16 42 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.27 8.68 5.78 -40.82 -0.24 8.45 16 45 H 0.03 0.79 7.95 -51.93 -0.41 0.38 16 46 H 0.07 1.98 5.88 -51.93 -0.31 1.68 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -37.56 367.19 -9.19 -46.74 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.03 Total: 6.45 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.96 Total: -4.34 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.25 Total: -55.61 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.38 Total: -20.84 kcal Atomic # 14 Polarization: 27.16 SS G_CDS: -5.09 Total: 22.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.56 -9.19 -46.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177500082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.619 kcal (2) G-P(sol) polarization free energy of solvation -37.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds