Wall clock time and date at job start Fri Apr 10 2020 18:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38235 * 119.99809 * 2 1 4 4 C 1.38233 * 120.00351 * 179.78847 * 3 2 1 5 5 C 1.38238 * 119.99681 * 0.45857 * 4 3 2 6 6 C 1.50697 * 120.00100 * 179.78997 * 5 4 3 7 7 C 1.53003 * 109.47121 * 269.97912 * 6 5 4 8 8 C 1.50703 * 109.46795 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00467 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99727 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99973 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.64051 * 36.68606 * 11 10 8 13 13 C 1.54323 * 110.71898 * 273.54691 * 11 10 8 14 14 N 1.47027 * 107.27045 * 219.44215 * 13 11 10 15 15 C 1.36936 * 125.65047 * 178.89997 * 14 13 11 16 16 H 1.07996 * 120.00126 * 341.52781 * 15 14 13 17 17 C 1.38809 * 119.99891 * 161.52209 * 15 14 13 18 18 N 1.31622 * 120.00025 * 157.64021 * 17 15 14 19 19 Si 1.86807 * 120.00228 * 337.63600 * 17 15 14 20 20 H 1.48502 * 109.47031 * 84.53586 * 19 17 15 21 21 H 1.48497 * 109.47331 * 204.53855 * 19 17 15 22 22 H 1.48500 * 109.46927 * 324.53955 * 19 17 15 23 23 C 1.47434 * 108.70194 * 358.94207 * 14 13 11 24 24 C 1.54907 * 104.83229 * 24.12367 * 23 14 13 25 25 H 1.09007 * 111.00361 * 81.06745 * 24 23 14 26 26 O 1.42898 * 111.00507 * 204.91867 * 24 23 14 27 27 C 1.38236 * 119.99749 * 359.77498 * 5 4 3 28 28 C 1.38232 * 120.00323 * 180.26884 * 2 1 3 29 29 H 1.08997 * 109.47132 * 269.72972 * 1 2 3 30 30 H 1.08997 * 109.46863 * 149.72718 * 1 2 3 31 31 H 1.08997 * 109.47246 * 29.72756 * 1 2 3 32 32 H 1.08005 * 120.00138 * 359.97438 * 3 2 1 33 33 H 1.07992 * 120.00747 * 180.25284 * 4 3 2 34 34 H 1.08994 * 109.47157 * 29.98567 * 6 5 4 35 35 H 1.09002 * 109.47096 * 149.98534 * 6 5 4 36 36 H 1.09000 * 109.47228 * 300.00303 * 7 6 5 37 37 H 1.09002 * 109.46627 * 60.00335 * 7 6 5 38 38 H 0.96995 * 119.99963 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.88103 * 338.85512 * 13 11 10 40 40 H 1.08996 * 109.88313 * 99.87386 * 13 11 10 41 41 H 0.96998 * 119.99795 * 179.97438 * 18 17 15 42 42 H 1.08995 * 110.36703 * 142.96497 * 23 14 13 43 43 H 1.09007 * 110.36315 * 265.29043 * 23 14 13 44 44 H 0.96702 * 113.99887 * 292.19610 * 26 24 23 45 45 H 1.08007 * 120.00205 * 179.97438 * 27 5 4 46 46 H 1.07997 * 119.99846 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0044 5 6 4.2718 0.0002 -0.0007 6 6 5.7787 0.0002 -0.0007 7 6 6.2888 0.0060 -1.4432 8 6 7.7958 0.0067 -1.4431 9 8 8.4022 0.0025 -0.3928 10 7 8.4697 0.0120 -2.6103 11 6 9.9347 0.0121 -2.6102 12 1 10.3190 -0.6010 -1.7950 13 6 10.4806 1.4524 -2.5145 14 7 11.6492 1.5362 -3.4028 15 6 12.4080 2.6553 -3.6198 16 1 12.0154 3.6303 -3.3721 17 6 13.6819 2.5363 -4.1582 18 7 14.2363 3.5615 -4.7697 19 14 14.6094 0.9211 -4.0149 20 1 14.2018 0.0165 -5.1199 21 1 16.0693 1.1794 -4.0996 22 1 14.2943 0.2833 -2.7114 23 6 11.8681 0.2162 -4.0219 24 6 10.4838 -0.4776 -3.9763 25 1 9.8500 -0.1393 -4.7960 26 8 10.6229 -1.8997 -3.9924 27 6 3.5806 -1.1970 -0.0056 28 6 2.1983 -1.1971 -0.0056 29 1 -0.3633 -0.0048 1.0276 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8924 -0.5096 32 1 1.6581 2.1325 -0.0004 33 1 4.1205 2.1325 0.0085 34 1 6.1420 0.8881 0.5167 35 1 6.1421 -0.8918 0.5095 36 1 5.9255 -0.8819 -1.9606 37 1 5.9254 0.8980 -1.9534 38 1 7.9848 0.0149 -3.4503 39 1 9.7175 2.1602 -2.8380 40 1 10.7761 1.6693 -1.4880 41 1 15.1267 3.4784 -5.1456 42 1 12.2008 0.3315 -5.0534 43 1 12.5980 -0.3553 -3.4485 44 1 10.9630 -2.2523 -4.8261 45 1 4.1206 -2.1323 -0.0101 46 1 1.6583 -2.1324 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194557611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:55 Heat of formation + Delta-G solvation = -43.839204 kcal Electronic energy + Delta-G solvation = -25783.251110 eV Core-core repulsion = 22059.004469 eV Total energy + Delta-G solvation = -3724.246642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.08202 -39.53122 -38.17015 -35.41637 -34.80660 -34.13707 -32.03727 -31.43275 -31.16984 -29.01951 -27.85492 -27.05358 -24.54035 -23.47388 -22.96787 -21.31341 -20.99739 -20.34340 -20.02893 -17.53354 -17.28963 -16.85995 -16.11276 -16.05460 -15.95514 -15.25659 -15.16078 -14.89713 -14.39114 -14.08628 -13.86971 -13.68329 -13.66561 -13.35783 -13.10246 -12.97766 -12.81191 -12.61516 -12.50715 -12.26644 -12.00922 -11.76017 -11.45356 -11.41184 -11.29894 -11.23528 -11.01006 -10.87058 -10.49115 -10.10011 -9.92740 -9.63004 -9.46909 -9.17134 -8.96374 -8.71980 -8.69544 -7.14012 -6.00339 -3.32368 1.06105 1.15723 2.73651 3.18541 3.27892 3.45377 3.49141 3.51650 4.18830 4.46759 4.49095 4.53138 4.64067 4.76474 4.84402 4.85387 4.87963 5.04723 5.07423 5.17460 5.23063 5.26083 5.27403 5.31007 5.39771 5.41049 5.43518 5.48891 5.65018 5.80850 5.82550 5.84632 5.87458 6.02069 6.17466 6.31694 6.33192 6.35626 6.43109 6.45577 6.59530 6.75726 6.77402 7.56951 7.60562 7.76692 8.24493 8.32921 8.75693 9.61424 10.06587 11.15292 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.002220 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.267542 B =12611.281332 C =13088.000737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.085 4.085 6 C -0.066 4.066 7 C -0.133 4.133 8 C 0.512 3.488 9 O -0.539 6.539 10 N -0.717 5.717 11 C 0.142 3.858 12 H 0.102 0.898 13 C 0.129 3.871 14 N -0.604 5.604 15 C -0.243 4.243 16 H 0.095 0.905 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 0.882 3.118 20 H -0.286 1.286 21 H -0.300 1.300 22 H -0.275 1.275 23 C 0.086 3.914 24 C 0.082 3.918 25 H 0.073 0.927 26 O -0.562 6.562 27 C -0.113 4.113 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.399 0.601 39 H 0.040 0.960 40 H 0.043 0.957 41 H 0.264 0.736 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.378 0.622 45 H 0.122 0.878 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.785 -10.243 4.939 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.085 4.085 6 C -0.103 4.103 7 C -0.173 4.173 8 C 0.299 3.701 9 O -0.415 6.415 10 N -0.368 5.368 11 C 0.037 3.963 12 H 0.120 0.880 13 C 0.003 3.997 14 N -0.332 5.332 15 C -0.370 4.370 16 H 0.113 0.887 17 C -0.176 4.176 18 N -0.549 5.549 19 Si 0.712 3.288 20 H -0.213 1.213 21 H -0.228 1.228 22 H -0.201 1.201 23 C -0.041 4.041 24 C 0.022 3.978 25 H 0.091 0.909 26 O -0.366 6.366 27 C -0.131 4.131 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.225 0.775 45 H 0.140 0.860 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.383 -10.023 6.227 27.992 hybrid contribution 0.739 -0.863 -1.004 1.517 sum -24.644 -10.886 5.223 27.443 Atomic orbital electron populations 1.20785 0.91362 1.02691 1.02231 1.19926 0.96009 0.93309 1.00214 1.21034 0.94203 0.97490 1.00986 1.21105 0.94110 0.97807 0.99946 1.19932 0.95627 0.93187 0.99726 1.20336 0.89815 1.04691 0.95487 1.21643 0.91898 1.04636 0.99117 1.20654 0.89992 0.75756 0.83737 1.90722 1.70433 1.49173 1.31187 1.45969 1.06942 1.75301 1.08619 1.21975 0.78917 0.97747 0.97670 0.87969 1.21718 0.90353 0.92598 0.95061 1.44599 1.32802 1.07302 1.48517 1.18647 0.95117 0.84735 1.38514 0.88736 1.25015 0.96686 0.96812 0.99106 1.69835 1.16651 1.31067 1.37336 0.87002 0.78890 0.84389 0.78481 1.21339 1.22801 1.20076 1.22599 0.94635 0.88082 0.98755 1.23284 0.97457 0.80418 0.96678 0.90899 1.86472 1.88427 1.20407 1.41324 1.21081 0.94095 0.97731 1.00162 1.21016 0.94184 0.97460 1.01130 0.91293 0.91645 0.91607 0.86167 0.85871 0.89992 0.90139 0.88889 0.88731 0.76672 0.94202 0.93892 0.92600 0.91670 0.94396 0.77453 0.85999 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.09 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.11 -0.99 9.70 -39.58 -0.38 -1.38 16 5 C -0.08 -0.79 5.13 -104.62 -0.54 -1.32 16 6 C -0.07 -0.66 4.63 -27.88 -0.13 -0.79 16 7 C -0.13 -1.27 5.68 -27.88 -0.16 -1.43 16 8 C 0.51 7.08 7.83 -10.98 -0.09 6.99 16 9 O -0.54 -9.69 15.71 5.56 0.09 -9.60 16 10 N -0.72 -9.69 5.13 -52.03 -0.27 -9.96 16 11 C 0.14 2.46 2.97 -66.10 -0.20 2.27 16 12 H 0.10 1.99 7.69 -51.93 -0.40 1.59 16 13 C 0.13 2.66 6.99 -3.06 -0.02 2.64 16 14 N -0.60 -14.58 3.21 -170.07 -0.55 -15.13 16 15 C -0.24 -6.88 10.57 -15.06 -0.16 -7.04 16 16 H 0.10 2.83 8.06 -52.49 -0.42 2.41 16 17 C 0.02 0.66 5.43 -17.43 -0.09 0.56 16 18 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 19 Si 0.88 22.49 24.27 -169.99 -4.13 18.37 16 20 H -0.29 -6.86 6.49 56.52 0.37 -6.49 16 21 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.27 -7.08 6.66 56.52 0.38 -6.71 16 23 C 0.09 1.82 4.43 -2.52 -0.01 1.81 16 24 C 0.08 1.35 4.04 -24.58 -0.10 1.25 16 25 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 26 O -0.56 -8.34 13.47 -35.23 -0.47 -8.82 16 27 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 28 C -0.12 -0.97 9.70 -39.59 -0.38 -1.35 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 35 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 4.16 8.52 -40.82 -0.35 3.82 16 39 H 0.04 0.79 8.03 -51.93 -0.42 0.38 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.07 1.42 6.63 -51.93 -0.34 1.08 16 43 H 0.04 0.87 5.58 -51.93 -0.29 0.58 16 44 H 0.38 3.95 9.12 45.56 0.42 4.37 16 45 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -34.74 375.41 -8.65 -43.39 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.47 Total: 5.15 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.28 Total: -2.16 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.04 Total: -51.99 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.39 Total: -18.42 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.13 Total: 18.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.74 -8.65 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194557611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.445 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds