Wall clock time and date at job start Fri Apr 10 2020 18:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38257 * 120.00203 * 2 1 4 4 C 1.38210 * 120.00247 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99743 * 359.95340 * 5 4 3 7 7 C 1.50704 * 119.99960 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47572 * 89.99803 * 7 6 5 9 9 C 1.50698 * 109.47270 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99811 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99963 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99953 * 180.02562 * 11 9 8 13 13 H 1.08997 * 110.77693 * 31.76417 * 12 11 9 14 14 C 1.54325 * 110.72131 * 268.52482 * 12 11 9 15 15 N 1.47290 * 107.30599 * 219.45483 * 14 12 11 16 16 C 1.36938 * 125.79079 * 178.92205 * 15 14 12 17 17 H 1.07995 * 120.00281 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99650 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00113 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46993 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47464 * 119.99742 * 20 18 16 23 23 H 1.48496 * 109.47378 * 240.00268 * 20 18 16 24 24 C 1.47425 * 108.55742 * 358.92448 * 15 14 12 25 25 C 1.54908 * 104.92961 * 24.15407 * 24 15 14 26 26 H 1.09008 * 111.00494 * 81.01141 * 25 24 15 27 27 O 1.42900 * 111.00699 * 204.82077 * 25 24 15 28 28 C 1.38217 * 120.00059 * 180.21219 * 2 1 3 29 29 H 1.09008 * 109.47143 * 89.99589 * 1 2 3 30 30 H 1.09006 * 109.47393 * 209.99749 * 1 2 3 31 31 H 1.09005 * 109.47454 * 329.99968 * 1 2 3 32 32 H 1.07998 * 119.99969 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.00289 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.00196 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.46969 * 329.99735 * 7 6 5 36 36 H 1.09005 * 109.46941 * 209.99962 * 7 6 5 37 37 H 1.09005 * 109.47029 * 59.99969 * 8 7 6 38 38 H 1.09005 * 109.47117 * 300.00051 * 8 7 6 39 39 H 0.96996 * 119.99924 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.88239 * 338.86280 * 14 12 11 41 41 H 1.08995 * 109.88239 * 99.87201 * 14 12 11 42 42 H 0.97001 * 119.99611 * 180.02562 * 19 18 16 43 43 H 1.09002 * 110.36696 * 265.26054 * 24 15 14 44 44 H 1.08995 * 110.36608 * 143.04891 * 24 15 14 45 45 H 0.96696 * 113.99718 * 298.55179 * 27 25 24 46 46 H 1.07993 * 120.00049 * 0.04295 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0010 7 6 4.3341 -2.5021 0.0016 8 6 4.5891 -2.9432 1.4442 9 6 5.3420 -4.2486 1.4447 10 8 5.6453 -4.7741 0.3945 11 7 5.6793 -4.8316 2.6121 12 6 6.4117 -6.1003 2.6126 13 1 7.0694 -6.1674 1.7460 14 6 5.4351 -7.2946 2.6508 15 7 6.0183 -8.3092 3.5451 16 6 5.4524 -9.5141 3.8663 17 1 4.4941 -9.7885 3.4507 18 6 6.1104 -10.3827 4.7261 19 7 7.2781 -10.0480 5.2331 20 14 5.3388 -12.0266 5.1637 21 1 4.0337 -12.1617 4.4681 22 1 6.2424 -13.1262 4.7397 23 1 5.1264 -12.0987 6.6317 24 6 7.3152 -7.8104 4.0378 25 6 7.2177 -6.2684 3.9277 26 1 6.6746 -5.8497 4.7750 27 8 8.5149 -5.6799 3.8132 28 6 2.1980 -1.1970 -0.0044 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0001 34 1 5.3516 0.0000 0.0005 35 1 5.2865 -2.3719 -0.5123 36 1 3.7450 -3.2619 -0.5120 37 1 3.6366 -3.0734 1.9581 38 1 5.1782 -2.1833 1.9578 39 1 5.4371 -4.4111 3.4520 40 1 4.4689 -6.9711 3.0380 41 1 5.3137 -7.7063 1.6489 42 1 7.7380 -10.6552 5.8336 43 1 8.1273 -8.1847 3.4144 44 1 7.4666 -8.1078 5.0755 45 1 9.0895 -5.8436 4.5734 46 1 1.6581 -2.1322 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195068399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:58 Heat of formation + Delta-G solvation = -47.281466 kcal Electronic energy + Delta-G solvation = -25777.077114 eV Core-core repulsion = 22052.681205 eV Total energy + Delta-G solvation = -3724.395909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98954 -39.42026 -37.83190 -35.08939 -34.53335 -34.00203 -32.56112 -31.75313 -30.11153 -28.36679 -27.22118 -26.97773 -25.06525 -24.04087 -22.24783 -20.92156 -20.63552 -20.14188 -19.90443 -17.34564 -17.03784 -16.71706 -16.44745 -15.99879 -15.66202 -15.07403 -14.95791 -14.80211 -14.13637 -13.97709 -13.86006 -13.46328 -13.34205 -13.11919 -13.06739 -12.85331 -12.61334 -12.51311 -12.27847 -11.90077 -11.79483 -11.47936 -11.44080 -11.28375 -11.13810 -11.02468 -10.98226 -10.87178 -10.17800 -9.96142 -9.78516 -9.70439 -9.31145 -8.99931 -8.79759 -8.75223 -8.74721 -6.94725 -5.74744 -3.17157 1.11475 1.16298 2.83210 3.31015 3.35903 3.41694 3.44084 3.56471 4.37857 4.50302 4.55895 4.60550 4.66047 4.85526 4.92310 4.98888 5.06898 5.11317 5.27436 5.28230 5.31058 5.39473 5.42648 5.48137 5.52063 5.62656 5.65578 5.70443 5.82132 5.86099 5.93247 6.05647 6.09087 6.17461 6.24751 6.34844 6.45608 6.48545 6.64908 6.79989 6.92912 7.28900 7.50052 7.66647 7.74794 8.08522 8.22892 8.43897 9.11312 9.71627 10.34420 11.29606 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.002269 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.667751 B =12339.099497 C =13218.108664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.075 4.075 7 C -0.066 4.066 8 C -0.133 4.133 9 C 0.511 3.489 10 O -0.542 6.542 11 N -0.716 5.716 12 C 0.141 3.859 13 H 0.101 0.899 14 C 0.129 3.871 15 N -0.600 5.600 16 C -0.221 4.221 17 H 0.081 0.919 18 C -0.012 4.012 19 N -0.925 5.925 20 Si 0.918 3.082 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.128 3.872 25 C 0.067 3.933 26 H 0.061 0.939 27 O -0.567 6.567 28 C -0.117 4.117 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.398 0.602 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.113 0.887 45 H 0.378 0.622 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.111 22.494 -5.790 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.140 4.140 6 C -0.075 4.075 7 C -0.104 4.104 8 C -0.173 4.173 9 C 0.298 3.702 10 O -0.419 6.419 11 N -0.366 5.366 12 C 0.036 3.964 13 H 0.119 0.881 14 C 0.002 3.998 15 N -0.328 5.328 16 C -0.349 4.349 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.002 3.998 25 C 0.006 3.994 26 H 0.079 0.921 27 O -0.371 6.371 28 C -0.135 4.135 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.232 0.768 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.131 0.869 45 H 0.225 0.775 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.101 22.117 -7.010 24.575 hybrid contribution -0.214 -0.825 1.205 1.476 sum -8.314 21.292 -5.805 23.583 Atomic orbital electron populations 1.20802 0.91267 1.02800 1.02326 1.19925 0.96042 0.93181 0.99463 1.21009 0.94312 0.97410 1.01879 1.21120 0.94285 0.97967 0.99954 1.21084 0.99961 0.91971 1.01021 1.19944 0.93699 0.95079 0.98750 1.20345 1.00925 0.93475 0.95613 1.21636 1.01489 0.95240 0.98958 1.20625 0.79404 0.86349 0.83859 1.90707 1.54591 1.65365 1.31253 1.46002 1.58088 1.24101 1.08410 1.21998 0.92785 0.82561 0.99084 0.88081 1.21680 0.94728 0.88619 0.94764 1.44358 1.19588 1.16676 1.52201 1.19153 1.02001 0.91476 1.22264 0.90134 1.24810 0.96896 0.99056 0.99966 1.69743 1.15168 1.36212 1.36212 0.85940 0.78233 0.83146 0.77837 1.20442 1.21641 1.21679 1.22576 0.87896 0.85836 1.03511 1.23644 0.83243 0.97114 0.95383 0.92092 1.86405 1.25810 1.77599 1.47328 1.20990 0.93608 0.97676 1.01198 0.91205 0.91433 0.91627 0.86358 0.86165 0.86024 0.90069 0.90042 0.88849 0.88896 0.76787 0.95179 0.94873 0.93632 0.95691 0.86930 0.77538 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.00 0.36 -0.38 16 2 C -0.09 -0.74 5.88 -104.63 -0.62 -1.36 16 3 C -0.13 -1.05 9.70 -39.58 -0.38 -1.44 16 4 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 5 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 6 C -0.07 -0.73 5.13 -104.62 -0.54 -1.27 16 7 C -0.07 -0.70 4.63 -27.88 -0.13 -0.83 16 8 C -0.13 -1.38 5.68 -27.89 -0.16 -1.54 16 9 C 0.51 7.61 7.83 -10.98 -0.09 7.53 16 10 O -0.54 -10.27 15.63 5.56 0.09 -10.19 16 11 N -0.72 -10.71 5.10 -52.03 -0.27 -10.98 16 12 C 0.14 2.67 3.05 -66.10 -0.20 2.46 16 13 H 0.10 2.15 7.55 -51.93 -0.39 1.76 16 14 C 0.13 2.81 7.01 -2.92 -0.02 2.78 16 15 N -0.60 -15.33 3.40 -169.86 -0.58 -15.91 16 16 C -0.22 -6.11 10.28 -15.06 -0.15 -6.26 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.29 10.09 55.49 0.56 -25.73 16 20 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.13 3.03 5.62 -2.53 -0.01 3.01 16 25 C 0.07 1.25 4.06 -24.58 -0.10 1.15 16 26 H 0.06 1.06 8.01 -51.92 -0.42 0.65 16 27 O -0.57 -9.75 13.47 -35.23 -0.47 -10.23 16 28 C -0.12 -1.10 9.36 -39.58 -0.37 -1.47 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.40 4.81 8.56 -40.82 -0.35 4.46 16 40 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.11 2.91 5.86 -51.93 -0.30 2.61 16 45 H 0.38 5.00 9.11 45.56 0.42 5.41 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -33.17 380.52 -9.74 -42.91 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.49 Total: 8.50 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.29 Total: -0.89 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.28 Total: -52.62 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.39 Total: -20.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.17 -9.74 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195068399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.376 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds