Wall clock time and date at job start Fri Apr 10 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38257 * 120.00203 * 2 1 4 4 C 1.38210 * 120.00247 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99743 * 359.95340 * 5 4 3 7 7 C 1.50704 * 119.99960 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47572 * 89.99803 * 7 6 5 9 9 C 1.50698 * 109.47270 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99811 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99963 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99953 * 180.02562 * 11 9 8 13 13 H 1.08997 * 110.77693 * 31.76417 * 12 11 9 14 14 C 1.54325 * 110.72131 * 268.52482 * 12 11 9 15 15 N 1.47290 * 107.30599 * 219.45483 * 14 12 11 16 16 C 1.36938 * 125.79079 * 178.92205 * 15 14 12 17 17 H 1.07995 * 120.00281 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99650 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00113 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46993 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47464 * 119.99742 * 20 18 16 23 23 H 1.48496 * 109.47378 * 240.00268 * 20 18 16 24 24 C 1.47425 * 108.55742 * 358.92448 * 15 14 12 25 25 C 1.54908 * 104.92961 * 24.15407 * 24 15 14 26 26 H 1.09008 * 111.00494 * 81.01141 * 25 24 15 27 27 O 1.42900 * 111.00699 * 204.82077 * 25 24 15 28 28 C 1.38217 * 120.00059 * 180.21219 * 2 1 3 29 29 H 1.09008 * 109.47143 * 89.99589 * 1 2 3 30 30 H 1.09006 * 109.47393 * 209.99749 * 1 2 3 31 31 H 1.09005 * 109.47454 * 329.99968 * 1 2 3 32 32 H 1.07998 * 119.99969 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.00289 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.00196 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.46969 * 329.99735 * 7 6 5 36 36 H 1.09005 * 109.46941 * 209.99962 * 7 6 5 37 37 H 1.09005 * 109.47029 * 59.99969 * 8 7 6 38 38 H 1.09005 * 109.47117 * 300.00051 * 8 7 6 39 39 H 0.96996 * 119.99924 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.88239 * 338.86280 * 14 12 11 41 41 H 1.08995 * 109.88239 * 99.87201 * 14 12 11 42 42 H 0.97001 * 119.99611 * 180.02562 * 19 18 16 43 43 H 1.09002 * 110.36696 * 265.26054 * 24 15 14 44 44 H 1.08995 * 110.36608 * 143.04891 * 24 15 14 45 45 H 0.96696 * 113.99718 * 298.55179 * 27 25 24 46 46 H 1.07993 * 120.00049 * 0.04295 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0010 7 6 4.3341 -2.5021 0.0016 8 6 4.5891 -2.9432 1.4442 9 6 5.3420 -4.2486 1.4447 10 8 5.6453 -4.7741 0.3945 11 7 5.6793 -4.8316 2.6121 12 6 6.4117 -6.1003 2.6126 13 1 7.0694 -6.1674 1.7460 14 6 5.4351 -7.2946 2.6508 15 7 6.0183 -8.3092 3.5451 16 6 5.4524 -9.5141 3.8663 17 1 4.4941 -9.7885 3.4507 18 6 6.1104 -10.3827 4.7261 19 7 7.2781 -10.0480 5.2331 20 14 5.3388 -12.0266 5.1637 21 1 4.0337 -12.1617 4.4681 22 1 6.2424 -13.1262 4.7397 23 1 5.1264 -12.0987 6.6317 24 6 7.3152 -7.8104 4.0378 25 6 7.2177 -6.2684 3.9277 26 1 6.6746 -5.8497 4.7750 27 8 8.5149 -5.6799 3.8132 28 6 2.1980 -1.1970 -0.0044 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0001 34 1 5.3516 0.0000 0.0005 35 1 5.2865 -2.3719 -0.5123 36 1 3.7450 -3.2619 -0.5120 37 1 3.6366 -3.0734 1.9581 38 1 5.1782 -2.1833 1.9578 39 1 5.4371 -4.4111 3.4520 40 1 4.4689 -6.9711 3.0380 41 1 5.3137 -7.7063 1.6489 42 1 7.7380 -10.6552 5.8336 43 1 8.1273 -8.1847 3.4144 44 1 7.4666 -8.1078 5.0755 45 1 9.0895 -5.8436 4.5734 46 1 1.6581 -2.1322 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195068399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:57 Heat of formation + Delta-G solvation = -69.869716 kcal Electronic energy + Delta-G solvation = -25778.056614 eV Core-core repulsion = 22052.681205 eV Total energy + Delta-G solvation = -3725.375409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14311 -40.28586 -39.36538 -36.68994 -35.61795 -35.26673 -33.65376 -33.14485 -31.08132 -30.02711 -28.72352 -27.72279 -26.59324 -25.34823 -22.91341 -22.51950 -21.94506 -21.46038 -20.99540 -19.11206 -18.48991 -17.94865 -17.36919 -17.22014 -16.81467 -16.56032 -16.03710 -15.77362 -15.52362 -15.43033 -14.89525 -14.69448 -14.54451 -14.30947 -14.00501 -13.92570 -13.72660 -13.62990 -13.39370 -13.21966 -13.08893 -13.00137 -12.81391 -12.76635 -12.47537 -12.15412 -12.03271 -11.95411 -11.81677 -11.70915 -11.43165 -11.18116 -10.83108 -10.77406 -10.15947 -9.65880 -9.44363 -8.99408 -7.83764 -5.30125 0.46023 0.52275 1.46652 1.47786 1.58125 1.63864 2.10726 2.46029 2.87839 3.06558 3.27957 3.60239 3.63347 3.85285 3.90600 4.00866 4.06128 4.08564 4.18842 4.23978 4.29432 4.34650 4.42991 4.53398 4.57816 4.63559 4.67414 4.79423 4.82517 4.85176 4.94052 4.97274 5.05232 5.13759 5.27154 5.35489 5.35909 5.42389 5.47753 5.62088 5.65825 5.73293 5.77393 6.17807 6.19230 6.55405 6.84196 7.02993 7.26252 7.66739 8.29470 9.18258 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.002269 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.667751 B =12339.099497 C =13218.108664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.120 4.120 5 C -0.133 4.133 6 C -0.084 4.084 7 C -0.060 4.060 8 C -0.119 4.119 9 C 0.509 3.491 10 O -0.587 6.587 11 N -0.704 5.704 12 C 0.154 3.846 13 H 0.075 0.925 14 C 0.130 3.870 15 N -0.620 5.620 16 C -0.242 4.242 17 H 0.081 0.919 18 C -0.063 4.063 19 N -0.947 5.947 20 Si 0.984 3.016 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.285 1.285 24 C 0.131 3.869 25 C 0.091 3.909 26 H 0.087 0.913 27 O -0.568 6.568 28 C -0.131 4.131 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.417 0.583 40 H 0.043 0.957 41 H 0.014 0.986 42 H 0.251 0.749 43 H -0.010 1.010 44 H 0.092 0.908 45 H 0.397 0.603 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 24.620 -4.966 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.137 4.137 5 C -0.151 4.151 6 C -0.084 4.084 7 C -0.098 4.098 8 C -0.159 4.159 9 C 0.298 3.702 10 O -0.467 6.467 11 N -0.356 5.356 12 C 0.048 3.952 13 H 0.093 0.907 14 C 0.004 3.996 15 N -0.348 5.348 16 C -0.370 4.370 17 H 0.099 0.901 18 C -0.256 4.256 19 N -0.596 5.596 20 Si 0.812 3.188 21 H -0.193 1.193 22 H -0.220 1.220 23 H -0.212 1.212 24 C 0.005 3.995 25 C 0.031 3.969 26 H 0.105 0.895 27 O -0.376 6.376 28 C -0.149 4.149 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.254 0.746 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.060 0.940 43 H 0.008 0.992 44 H 0.110 0.890 45 H 0.247 0.753 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.474 24.289 -6.161 26.789 hybrid contribution 0.230 -1.456 0.888 1.721 sum -9.244 22.833 -5.273 25.191 Atomic orbital electron populations 1.20838 0.89872 1.03519 1.02890 1.20221 0.97242 0.93062 0.98965 1.21327 0.94550 0.98133 1.01153 1.21407 0.94606 0.98495 0.99228 1.21260 1.00549 0.92094 1.01224 1.19868 0.93885 0.94713 0.99941 1.20234 1.00253 0.93790 0.95558 1.21630 1.02060 0.92828 0.99338 1.21453 0.78612 0.87284 0.82837 1.90696 1.56306 1.66797 1.32880 1.45825 1.57537 1.22589 1.09667 1.21513 0.92105 0.83451 0.98161 0.90700 1.21742 0.95912 0.88913 0.93068 1.44619 1.20210 1.16994 1.52929 1.19478 1.02336 0.92755 1.22480 0.90090 1.25648 0.97505 1.02372 1.00042 1.69961 1.16145 1.37065 1.36474 0.84929 0.77641 0.78690 0.77541 1.19305 1.22020 1.21188 1.22403 0.86358 0.89500 1.01199 1.23273 0.84306 0.93438 0.95923 0.89493 1.86378 1.25490 1.76870 1.48868 1.21133 0.93635 0.98341 1.01753 0.90658 0.91225 0.90434 0.84416 0.84197 0.85251 0.91220 0.91504 0.86657 0.86403 0.74606 0.93855 0.96822 0.93957 0.99155 0.89042 0.75312 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.23 0.71 -0.52 16 2 C -0.09 -1.46 5.88 -19.87 -0.12 -1.58 16 3 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 4 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 5 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 6 C -0.08 -1.54 5.13 -19.86 -0.10 -1.65 16 7 C -0.06 -1.25 4.63 29.85 0.14 -1.11 16 8 C -0.12 -2.23 5.68 29.85 0.17 -2.06 16 9 C 0.51 14.62 7.83 87.66 0.69 15.31 16 10 O -0.59 -22.50 15.63 -3.03 -0.05 -22.55 16 11 N -0.70 -19.90 5.10 -436.92 -2.23 -22.13 16 12 C 0.15 5.80 3.05 46.18 0.14 5.94 16 13 H 0.07 3.26 7.55 -2.39 -0.02 3.24 16 14 C 0.13 5.71 7.01 86.68 0.61 6.32 16 15 N -0.62 -32.22 3.40 -691.31 -2.35 -34.57 16 16 C -0.24 -13.56 10.28 84.03 0.86 -12.70 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 18 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 19 N -0.95 -54.81 10.09 21.65 0.22 -54.60 16 20 Si 0.98 45.01 29.55 68.60 2.03 47.03 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 24 C 0.13 6.36 5.62 86.85 0.49 6.85 16 25 C 0.09 3.33 4.06 31.98 0.13 3.46 16 26 H 0.09 2.79 8.01 -2.38 -0.02 2.77 16 27 O -0.57 -18.75 13.47 -148.98 -2.01 -20.76 16 28 C -0.13 -2.29 9.36 22.27 0.21 -2.09 16 29 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.71 8.09 -2.38 -0.02 0.70 16 31 H 0.08 0.64 8.09 -2.38 -0.02 0.62 16 32 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.07 1.57 8.04 -2.38 -0.02 1.55 16 36 H 0.07 1.55 8.04 -2.38 -0.02 1.53 16 37 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.42 8.79 8.56 -92.71 -0.79 8.00 16 40 H 0.04 1.79 8.03 -2.38 -0.02 1.77 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.09 4.84 5.86 -2.39 -0.01 4.82 16 45 H 0.40 9.83 9.11 -74.06 -0.67 9.15 16 46 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -73.22 380.52 0.18 -73.04 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.48 Total: 26.55 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.05 Total: 7.98 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -4.36 Total: -111.30 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -2.05 Total: -43.31 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -73.22 0.18 -73.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195068399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.169 kcal (2) G-P(sol) polarization free energy of solvation -73.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds