Wall clock time and date at job start Fri Apr 10 2020 18:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46829 * 2 1 4 4 C 1.52996 * 109.47409 * 239.99897 * 2 1 3 5 5 C 1.50700 * 109.47312 * 65.00005 * 4 2 1 6 6 O 1.21280 * 120.00043 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00227 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99953 * 179.97438 * 7 5 4 9 9 H 1.09006 * 110.77838 * 36.79308 * 8 7 5 10 10 C 1.54324 * 110.72744 * 273.54979 * 8 7 5 11 11 N 1.47014 * 107.27181 * 219.44682 * 10 8 7 12 12 C 1.36938 * 125.64626 * 178.97637 * 11 10 8 13 13 H 1.08000 * 120.00398 * 349.93598 * 12 11 10 14 14 C 1.38816 * 120.00207 * 169.94445 * 12 11 10 15 15 N 1.31624 * 119.99580 * 350.41769 * 14 12 11 16 16 Si 1.86797 * 120.00252 * 170.41912 * 14 12 11 17 17 H 1.48500 * 109.47032 * 94.13825 * 16 14 12 18 18 H 1.48500 * 109.47027 * 214.13643 * 16 14 12 19 19 H 1.48502 * 109.47194 * 334.13957 * 16 14 12 20 20 C 1.47422 * 108.70602 * 358.93839 * 11 10 8 21 21 C 1.54911 * 104.83149 * 24.12875 * 20 11 10 22 22 H 1.09001 * 111.00028 * 81.06787 * 21 20 11 23 23 O 1.42904 * 111.00377 * 204.91517 * 21 20 11 24 24 C 1.50699 * 109.46877 * 119.99466 * 2 1 3 25 25 C 1.38232 * 120.00030 * 59.73422 * 24 2 1 26 26 C 1.38235 * 120.00331 * 179.78392 * 25 24 2 27 27 C 1.38237 * 119.99393 * 0.46266 * 26 25 24 28 28 C 1.38232 * 120.00488 * 359.76675 * 27 26 25 29 29 C 1.38237 * 119.99904 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47411 * 300.00485 * 1 2 3 32 32 H 1.09006 * 109.47152 * 60.00509 * 1 2 3 33 33 H 1.08999 * 109.47002 * 305.00239 * 4 2 1 34 34 H 1.09004 * 109.47195 * 184.99946 * 4 2 1 35 35 H 0.96996 * 119.99597 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.87928 * 338.86283 * 10 8 7 37 37 H 1.09000 * 109.88181 * 100.02494 * 10 8 7 38 38 H 0.97003 * 119.99654 * 179.97438 * 15 14 12 39 39 H 1.09000 * 110.37021 * 142.96929 * 20 11 10 40 40 H 1.09005 * 110.36826 * 265.18071 * 20 11 10 41 41 H 0.96701 * 114.00257 * 292.20061 * 23 21 20 42 42 H 1.08003 * 119.99770 * 359.97438 * 25 24 2 43 43 H 1.07994 * 120.00199 * 180.24478 * 26 25 24 44 44 H 1.08001 * 119.99893 * 179.78892 * 27 26 25 45 45 H 1.08001 * 120.00446 * 180.02562 * 28 27 26 46 46 H 1.08001 * 120.00010 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3634 7 7 1.9855 -0.3914 -3.7001 8 6 1.5975 0.3648 -4.8932 9 1 1.6510 1.4373 -4.7057 10 6 0.1824 -0.0380 -5.3591 11 7 0.2027 -0.0825 -6.8284 12 6 -0.8541 -0.4195 -7.6313 13 1 -1.7504 -0.8375 -7.1972 14 6 -0.7735 -0.2241 -9.0033 15 7 0.2327 0.4539 -9.5134 16 14 -2.0930 -0.9233 -10.1255 17 1 -3.1276 0.1117 -10.3778 18 1 -1.4799 -1.3348 -11.4139 19 1 -2.7205 -2.1026 -9.4768 20 6 1.5490 0.2968 -7.2943 21 6 2.4861 -0.0257 -6.1037 22 1 2.7357 -1.0864 -6.0791 23 8 3.6684 0.7756 -6.1508 24 6 2.0322 -0.7103 1.2305 25 6 1.6937 -2.0321 1.4522 26 6 2.1581 -2.6850 2.5786 27 6 2.9532 -2.0132 3.4883 28 6 3.2878 -0.6900 3.2692 29 6 2.8269 -0.0384 2.1405 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.6054 -1.7198 -1.2951 34 1 3.1264 -0.7994 -1.2055 35 1 2.4894 -1.2153 -3.7906 36 1 -0.0728 -1.0206 -4.9620 37 1 -0.5437 0.7010 -5.0205 38 1 0.2893 0.5902 -10.4721 39 1 1.8284 -0.2929 -8.1674 40 1 1.5835 1.3607 -7.5291 41 1 4.2552 0.5678 -6.8909 42 1 1.0689 -2.5556 0.7436 43 1 1.8969 -3.7188 2.7498 44 1 3.3132 -2.5223 4.3702 45 1 3.9093 -0.1653 3.9797 46 1 3.0880 0.9955 1.9694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198380725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:06 Heat of formation + Delta-G solvation = -65.312959 kcal Electronic energy + Delta-G solvation = -26296.816637 eV Core-core repulsion = 22571.638824 eV Total energy + Delta-G solvation = -3725.177813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.26952 -40.23562 -39.34564 -36.70504 -36.06038 -35.43512 -33.65888 -31.73635 -30.97439 -30.19600 -29.19454 -28.15908 -26.26995 -24.49399 -23.38641 -22.60248 -22.09023 -21.45701 -20.66533 -19.06293 -18.55903 -18.11254 -17.41355 -17.28298 -16.66335 -16.41481 -16.03204 -15.85628 -15.58731 -15.35500 -14.90775 -14.76550 -14.47091 -14.40930 -14.10346 -14.03238 -13.82170 -13.65801 -13.28120 -13.19665 -13.06657 -12.92176 -12.74842 -12.61907 -12.18808 -12.13525 -12.08257 -11.91900 -11.72746 -11.53304 -11.51838 -11.09728 -10.77340 -10.64969 -10.11788 -9.75072 -9.55522 -8.96057 -7.93076 -5.30603 0.50379 0.56958 1.46257 1.47362 1.57425 1.68029 2.12269 2.46634 2.94845 3.05836 3.27001 3.59052 3.62466 3.80330 3.85124 4.01690 4.07865 4.16291 4.21707 4.23766 4.26796 4.37217 4.42456 4.53540 4.58551 4.67684 4.68606 4.71919 4.84282 4.87998 4.94612 5.07063 5.18652 5.21217 5.27704 5.29972 5.38414 5.42634 5.52995 5.60266 5.66334 5.69951 5.81167 6.11472 6.18943 6.59158 6.85108 7.01011 7.31304 7.66065 8.30987 9.18180 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024340 B = 0.002430 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.103782 B =11518.826172 C =12080.771699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 H 0.069 0.931 4 C -0.121 4.121 5 C 0.509 3.491 6 O -0.577 6.577 7 N -0.705 5.705 8 C 0.158 3.842 9 H 0.072 0.928 10 C 0.132 3.868 11 N -0.618 5.618 12 C -0.249 4.249 13 H 0.080 0.920 14 C -0.060 4.060 15 N -0.947 5.947 16 Si 0.982 3.018 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.267 1.267 20 C 0.156 3.844 21 C 0.092 3.908 22 H 0.093 0.907 23 O -0.567 6.567 24 C -0.082 4.082 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.132 4.132 28 C -0.126 4.126 29 C -0.131 4.131 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.416 0.584 36 H 0.044 0.956 37 H 0.009 0.991 38 H 0.251 0.749 39 H 0.053 0.947 40 H 0.000 1.000 41 H 0.397 0.603 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 -8.604 23.239 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.087 0.913 4 C -0.160 4.160 5 C 0.298 3.702 6 O -0.457 6.457 7 N -0.357 5.357 8 C 0.051 3.949 9 H 0.090 0.910 10 C 0.006 3.994 11 N -0.346 5.346 12 C -0.378 4.378 13 H 0.098 0.902 14 C -0.254 4.254 15 N -0.595 5.595 16 Si 0.809 3.191 17 H -0.216 1.216 18 H -0.215 1.215 19 H -0.191 1.191 20 C 0.030 3.970 21 C 0.031 3.969 22 H 0.111 0.889 23 O -0.375 6.375 24 C -0.082 4.082 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.144 4.144 29 C -0.149 4.149 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.254 0.746 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.018 0.982 41 H 0.248 0.752 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.821 -7.615 23.659 26.373 hybrid contribution -0.445 -0.198 -1.640 1.710 sum 8.376 -7.813 22.020 24.821 Atomic orbital electron populations 1.21905 0.94394 1.02131 1.01877 1.19772 0.96118 0.98563 0.90516 0.91253 1.21759 1.04382 1.00330 0.89554 1.21370 0.78106 0.85397 0.85329 1.90679 1.41337 1.26612 1.87067 1.45826 1.57486 1.27866 1.04541 1.21446 0.92766 0.96293 0.84364 0.91027 1.21691 0.94917 0.98209 0.84630 1.44564 1.08915 1.80544 1.00585 1.19402 0.95073 1.34484 0.88828 0.90203 1.25711 1.00903 1.00362 0.98399 1.70134 1.33646 1.44233 1.11450 0.85035 0.77929 0.78136 0.78002 1.21604 1.21452 1.19124 1.21830 0.83789 0.96816 0.94576 1.23228 0.84899 0.94671 0.94077 0.88929 1.86402 1.33432 1.63462 1.54197 1.19844 0.97830 0.94677 0.95858 1.21214 1.00241 0.94110 0.98438 1.21442 0.97716 1.00844 0.94288 1.21463 0.98566 0.94888 1.00085 1.21400 1.00115 0.95411 0.97511 1.21288 0.98318 1.00366 0.94952 0.91747 0.92850 0.92930 0.86322 0.86672 0.74627 0.93803 0.97283 0.93968 0.92894 0.98234 0.75240 0.85007 0.84268 0.84306 0.84564 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.74 71.98 0.63 -2.66 16 2 C -0.03 -0.62 2.21 -11.54 -0.03 -0.65 16 3 H 0.07 1.64 7.69 -2.38 -0.02 1.62 16 4 C -0.12 -2.21 4.92 29.85 0.15 -2.06 16 5 C 0.51 14.21 7.54 87.66 0.66 14.87 16 6 O -0.58 -21.41 13.70 -3.03 -0.04 -21.45 16 7 N -0.70 -19.26 5.13 -436.92 -2.24 -21.51 16 8 C 0.16 5.84 2.97 46.18 0.14 5.98 16 9 H 0.07 3.09 7.70 -2.38 -0.02 3.07 16 10 C 0.13 5.80 6.99 86.73 0.61 6.40 16 11 N -0.62 -32.14 3.39 -692.00 -2.35 -34.49 16 12 C -0.25 -14.04 10.24 84.03 0.86 -13.18 16 13 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 14 C -0.06 -3.38 5.40 84.86 0.46 -2.93 16 15 N -0.95 -56.05 10.68 21.65 0.23 -55.82 16 16 Si 0.98 45.12 29.56 68.60 2.03 47.15 16 17 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 C 0.16 7.52 5.16 86.86 0.45 7.97 16 21 C 0.09 3.25 4.04 31.99 0.13 3.38 16 22 H 0.09 2.78 8.00 -2.39 -0.02 2.76 16 23 O -0.57 -18.16 13.47 -148.98 -2.01 -20.16 16 24 C -0.08 -1.44 4.78 -19.87 -0.09 -1.54 16 25 C -0.12 -1.86 8.76 22.27 0.20 -1.67 16 26 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 27 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 28 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 29 C -0.13 -2.23 9.67 22.27 0.22 -2.01 16 30 H 0.06 1.23 7.37 -2.39 -0.02 1.21 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.52 5.95 -2.38 -0.01 1.51 16 33 H 0.12 1.63 7.59 -2.39 -0.02 1.61 16 34 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.42 8.29 8.52 -92.71 -0.79 7.50 16 36 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.05 2.75 6.94 -2.39 -0.02 2.73 16 40 H 0.00 -0.02 8.07 -2.38 -0.02 -0.04 16 41 H 0.40 9.20 9.12 -74.06 -0.68 8.53 16 42 H 0.13 1.66 7.16 -2.91 -0.02 1.64 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 46 H 0.12 1.94 7.95 -2.91 -0.02 1.91 16 Total: -1.00 -74.24 373.66 0.19 -74.05 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.47 Total: 24.85 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.04 Total: 7.39 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -4.36 Total: -111.81 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -2.05 Total: -41.62 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.24 0.19 -74.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198380725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.737 kcal (2) G-P(sol) polarization free energy of solvation -74.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds