Wall clock time and date at job start Fri Apr 10 2020 18:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46875 * 2 1 4 4 C 1.53001 * 109.47160 * 240.00431 * 2 1 3 5 5 C 1.50700 * 109.47040 * 64.99890 * 4 2 1 6 6 C 1.38236 * 120.00053 * 269.72342 * 5 4 2 7 7 C 1.38234 * 119.99962 * 179.78811 * 6 5 4 8 8 C 1.38231 * 119.99799 * 0.46790 * 7 6 5 9 9 C 1.38234 * 120.00271 * 359.76826 * 8 7 6 10 10 C 1.38231 * 120.00231 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47306 * 120.00220 * 2 1 3 12 12 O 1.21277 * 119.99759 * 120.00215 * 11 2 1 13 13 N 1.34778 * 119.99877 * 300.00055 * 11 2 1 14 14 C 1.46505 * 119.99874 * 179.97438 * 13 11 2 15 15 H 1.08998 * 110.63581 * 31.85748 * 14 13 11 16 16 C 1.54328 * 110.99816 * 268.78079 * 14 13 11 17 17 N 1.47023 * 107.26445 * 219.59879 * 16 14 13 18 18 C 1.36939 * 125.64881 * 178.85021 * 17 16 14 19 19 H 1.08000 * 119.99903 * 342.87500 * 18 17 16 20 20 C 1.38813 * 119.99790 * 162.87291 * 18 17 16 21 21 N 1.31620 * 120.00492 * 331.90309 * 20 18 17 22 22 Si 1.86805 * 119.99884 * 151.90711 * 20 18 17 23 23 H 1.48496 * 109.47349 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46948 * 300.00224 * 22 20 18 25 25 H 1.48505 * 109.47175 * 59.99533 * 22 20 18 26 26 C 1.47421 * 108.70467 * 358.59038 * 17 16 14 27 27 C 1.54917 * 104.83049 * 24.35070 * 26 17 16 28 28 H 1.09002 * 110.99802 * 81.10572 * 27 26 17 29 29 O 1.42895 * 111.00388 * 204.91331 * 27 26 17 30 30 H 1.09002 * 109.46909 * 59.99637 * 1 2 3 31 31 H 1.08998 * 109.46697 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47221 * 299.99720 * 1 2 3 33 33 H 1.09000 * 109.46692 * 184.99804 * 4 2 1 34 34 H 1.09000 * 109.46960 * 304.99993 * 4 2 1 35 35 H 1.07998 * 119.99730 * 0.02562 * 6 5 4 36 36 H 1.07997 * 119.99938 * 180.25538 * 7 6 5 37 37 H 1.08005 * 119.99605 * 179.78979 * 8 7 6 38 38 H 1.07998 * 119.99583 * 180.02562 * 9 8 7 39 39 H 1.07997 * 120.00275 * 179.97438 * 10 9 8 40 40 H 0.97001 * 119.99797 * 359.97438 * 13 11 2 41 41 H 1.09003 * 109.99465 * 100.12874 * 16 14 13 42 42 H 1.08998 * 109.78421 * 338.96118 * 16 14 13 43 43 H 0.97000 * 119.99473 * 353.96690 * 21 20 18 44 44 H 1.08998 * 110.37200 * 143.19182 * 26 17 16 45 45 H 1.09003 * 110.36526 * 265.40803 * 26 17 16 46 46 H 0.96696 * 114.00486 * 298.55307 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 0.4381 -0.2087 -3.1031 7 6 0.0704 0.5083 -4.2263 8 6 0.9103 1.4846 -4.7286 9 6 2.1157 1.7472 -4.1050 10 6 2.4815 1.0331 -2.9793 11 6 2.0324 -0.7104 1.2304 12 8 2.7296 -1.6964 1.1190 13 7 1.7068 -0.2500 2.4546 14 6 2.1947 -0.9410 3.6507 15 1 3.1706 -1.3892 3.4642 16 6 1.1880 -2.0126 4.1197 17 7 1.1541 -1.9663 5.5888 18 6 0.3672 -2.7459 6.3939 19 1 -0.4852 -3.2630 5.9786 20 6 0.6652 -2.8716 7.7438 21 7 1.9084 -2.7473 8.1578 22 14 -0.6983 -3.2171 8.9731 23 1 -0.1227 -3.3049 10.3391 24 1 -1.6966 -2.1187 8.9267 25 1 -1.3597 -4.5019 8.6305 26 6 2.1120 -0.9459 6.0518 27 6 2.2586 0.0309 4.8584 28 1 1.4332 0.7424 4.8322 29 8 3.5152 0.7099 4.9036 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.1263 -0.7993 -1.2056 34 1 1.6054 -1.7197 -1.2953 35 1 -0.2163 -0.9740 -2.7128 36 1 -0.8715 0.3034 -4.7133 37 1 0.6245 2.0424 -5.6081 38 1 2.7716 2.5102 -4.4973 39 1 3.4234 1.2380 -2.4923 40 1 1.1494 0.5389 2.5435 41 1 1.5117 -2.9990 3.7874 42 1 0.1991 -1.7903 3.7188 43 1 2.6273 -2.6554 7.5131 44 1 1.7180 -0.4234 6.9235 45 1 3.0717 -1.4058 6.2878 46 1 3.6400 1.2542 5.6930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198889685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:17 Heat of formation + Delta-G solvation = -47.081665 kcal Electronic energy + Delta-G solvation = -26401.670160 eV Core-core repulsion = 22677.282915 eV Total energy + Delta-G solvation = -3724.387245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.25010 -39.36741 -38.09984 -35.33363 -35.05583 -34.22388 -31.94126 -31.19952 -30.90437 -28.32040 -27.29589 -26.92416 -24.51827 -23.58460 -22.73709 -21.40186 -20.77455 -20.29126 -19.72409 -17.69654 -17.38825 -16.99906 -16.72856 -15.90355 -15.62602 -15.28942 -14.99445 -14.62306 -14.34429 -13.94079 -13.75334 -13.60162 -13.57559 -13.30938 -13.19892 -12.87526 -12.63266 -12.49847 -12.30037 -12.22673 -11.69464 -11.55129 -11.46039 -11.32689 -11.18501 -11.04428 -10.77716 -10.61810 -10.14945 -10.05940 -9.95543 -9.65388 -9.45015 -9.15761 -8.92526 -8.85814 -8.46314 -7.04002 -6.16226 -3.22633 1.09472 1.14674 2.75743 3.21952 3.47199 3.49897 3.55805 3.68541 4.30047 4.47073 4.57888 4.58259 4.67852 4.74362 4.82169 4.85705 4.95399 5.04834 5.21007 5.24931 5.26534 5.30087 5.41089 5.50739 5.53650 5.55892 5.58468 5.62773 5.77045 5.82445 5.92300 5.95118 5.97976 6.02109 6.21961 6.26027 6.38773 6.42807 6.56128 6.68975 6.75830 6.81739 6.86169 7.63237 7.69512 7.88385 8.35346 8.41082 8.93388 9.73309 10.25151 11.15754 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.002452 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.249362 B =11414.879135 C =11996.359648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.064 4.064 5 C -0.076 4.076 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.127 4.127 9 C -0.119 4.119 10 C -0.117 4.117 11 C 0.517 3.483 12 O -0.539 6.539 13 N -0.714 5.714 14 C 0.142 3.858 15 H 0.102 0.898 16 C 0.129 3.871 17 N -0.598 5.598 18 C -0.339 4.339 19 H 0.068 0.932 20 C -0.025 4.025 21 N -0.914 5.914 22 Si 1.066 2.934 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.119 3.881 27 C 0.077 3.923 28 H 0.066 0.934 29 O -0.563 6.563 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.398 0.602 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.269 0.731 44 H 0.057 0.943 45 H 0.039 0.961 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 12.148 -21.593 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 H 0.115 0.885 4 C -0.101 4.101 5 C -0.076 4.076 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.137 4.137 10 C -0.135 4.135 11 C 0.303 3.697 12 O -0.416 6.416 13 N -0.364 5.364 14 C 0.037 3.963 15 H 0.120 0.880 16 C 0.003 3.997 17 N -0.326 5.326 18 C -0.466 4.466 19 H 0.086 0.914 20 C -0.227 4.227 21 N -0.555 5.555 22 Si 0.895 3.105 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.219 1.219 26 C -0.007 4.007 27 C 0.016 3.984 28 H 0.084 0.916 29 O -0.367 6.367 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.232 0.768 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.096 10.877 -20.565 23.359 hybrid contribution -0.051 0.794 -1.072 1.335 sum -2.148 11.670 -21.637 24.677 Atomic orbital electron populations 1.21872 0.92786 1.03019 1.02808 1.21249 0.97802 1.00753 0.92568 0.88532 1.20431 1.02318 0.98162 0.89237 1.19927 0.94529 0.96543 0.96578 1.21126 0.96311 0.99993 0.95843 1.21154 0.99665 0.96420 0.96576 1.21138 0.94823 0.98443 1.00151 1.21143 0.96821 0.99722 0.96055 1.21112 0.99713 0.96091 0.96590 1.20564 0.79979 0.84601 0.84541 1.90709 1.37874 1.26246 1.86721 1.45940 1.53392 1.31620 1.05474 1.21963 0.99216 0.92544 0.82570 0.87979 1.21681 0.95741 0.95865 0.86454 1.44378 1.47749 1.40828 0.99683 1.19754 1.06086 1.28458 0.92325 0.91443 1.25817 1.00734 0.99415 0.96720 1.70795 0.98833 1.47699 1.38169 0.83513 0.74650 0.76028 0.76292 1.21021 1.22072 1.21896 1.22165 0.94655 0.89616 0.94285 1.23368 0.85254 0.93179 0.96569 0.91620 1.86453 1.37204 1.65987 1.47103 0.91128 0.91828 0.92015 0.89947 0.90087 0.85942 0.86181 0.86336 0.86204 0.86033 0.76796 0.94775 0.94985 0.91961 0.92474 0.94343 0.77475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.67 37.16 0.32 -1.02 16 2 C -0.10 -1.08 2.71 -91.77 -0.25 -1.33 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.06 -0.68 4.19 -27.88 -0.12 -0.79 16 5 C -0.08 -0.71 4.70 -104.62 -0.49 -1.21 16 6 C -0.11 -1.00 7.98 -39.58 -0.32 -1.31 16 7 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 8 C -0.13 -0.98 10.05 -39.59 -0.40 -1.37 16 9 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 10 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 11 C 0.52 7.66 7.15 -10.98 -0.08 7.58 16 12 O -0.54 -10.20 15.56 5.56 0.09 -10.11 16 13 N -0.71 -10.45 5.01 -52.03 -0.26 -10.71 16 14 C 0.14 2.64 3.04 -66.09 -0.20 2.44 16 15 H 0.10 2.14 7.55 -51.93 -0.39 1.75 16 16 C 0.13 2.82 7.01 -3.06 -0.02 2.80 16 17 N -0.60 -15.17 3.29 -170.06 -0.56 -15.73 16 18 C -0.34 -9.55 10.02 -15.06 -0.15 -9.70 16 19 H 0.07 1.90 7.97 -52.49 -0.42 1.48 16 20 C -0.02 -0.71 5.08 -17.43 -0.09 -0.80 16 21 N -0.91 -27.45 12.93 55.49 0.72 -26.73 16 22 Si 1.07 25.05 30.00 -169.99 -5.10 19.95 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.12 2.71 5.04 -2.53 -0.01 2.70 16 27 C 0.08 1.36 4.06 -24.58 -0.10 1.26 16 28 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 29 O -0.56 -9.12 13.47 -35.23 -0.47 -9.60 16 30 H 0.07 0.57 6.28 -51.93 -0.33 0.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.52 7.57 -51.93 -0.39 0.13 16 33 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 34 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.12 0.95 8.05 -52.49 -0.42 0.52 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.40 4.69 7.98 -40.82 -0.33 4.37 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 43 H 0.27 8.15 6.06 -40.82 -0.25 7.90 16 44 H 0.06 1.37 7.95 -51.93 -0.41 0.95 16 45 H 0.04 0.96 6.80 -51.93 -0.35 0.60 16 46 H 0.38 4.55 9.11 45.56 0.42 4.96 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -34.33 375.11 -9.31 -43.64 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.29 Total: 8.52 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.08 Total: -4.88 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.10 Total: -53.17 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.39 Total: -19.71 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.10 Total: 19.95 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.33 -9.31 -43.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198889685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.442 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds