Wall clock time and date at job start Fri Apr 10 2020 18:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46875 * 2 1 4 4 C 1.53001 * 109.47160 * 240.00431 * 2 1 3 5 5 C 1.50700 * 109.47040 * 64.99890 * 4 2 1 6 6 C 1.38236 * 120.00053 * 269.72342 * 5 4 2 7 7 C 1.38234 * 119.99962 * 179.78811 * 6 5 4 8 8 C 1.38231 * 119.99799 * 0.46790 * 7 6 5 9 9 C 1.38234 * 120.00271 * 359.76826 * 8 7 6 10 10 C 1.38231 * 120.00231 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47306 * 120.00220 * 2 1 3 12 12 O 1.21277 * 119.99759 * 120.00215 * 11 2 1 13 13 N 1.34778 * 119.99877 * 300.00055 * 11 2 1 14 14 C 1.46505 * 119.99874 * 179.97438 * 13 11 2 15 15 H 1.08998 * 110.63581 * 31.85748 * 14 13 11 16 16 C 1.54328 * 110.99816 * 268.78079 * 14 13 11 17 17 N 1.47023 * 107.26445 * 219.59879 * 16 14 13 18 18 C 1.36939 * 125.64881 * 178.85021 * 17 16 14 19 19 H 1.08000 * 119.99903 * 342.87500 * 18 17 16 20 20 C 1.38813 * 119.99790 * 162.87291 * 18 17 16 21 21 N 1.31620 * 120.00492 * 331.90309 * 20 18 17 22 22 Si 1.86805 * 119.99884 * 151.90711 * 20 18 17 23 23 H 1.48496 * 109.47349 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46948 * 300.00224 * 22 20 18 25 25 H 1.48505 * 109.47175 * 59.99533 * 22 20 18 26 26 C 1.47421 * 108.70467 * 358.59038 * 17 16 14 27 27 C 1.54917 * 104.83049 * 24.35070 * 26 17 16 28 28 H 1.09002 * 110.99802 * 81.10572 * 27 26 17 29 29 O 1.42895 * 111.00388 * 204.91331 * 27 26 17 30 30 H 1.09002 * 109.46909 * 59.99637 * 1 2 3 31 31 H 1.08998 * 109.46697 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47221 * 299.99720 * 1 2 3 33 33 H 1.09000 * 109.46692 * 184.99804 * 4 2 1 34 34 H 1.09000 * 109.46960 * 304.99993 * 4 2 1 35 35 H 1.07998 * 119.99730 * 0.02562 * 6 5 4 36 36 H 1.07997 * 119.99938 * 180.25538 * 7 6 5 37 37 H 1.08005 * 119.99605 * 179.78979 * 8 7 6 38 38 H 1.07998 * 119.99583 * 180.02562 * 9 8 7 39 39 H 1.07997 * 120.00275 * 179.97438 * 10 9 8 40 40 H 0.97001 * 119.99797 * 359.97438 * 13 11 2 41 41 H 1.09003 * 109.99465 * 100.12874 * 16 14 13 42 42 H 1.08998 * 109.78421 * 338.96118 * 16 14 13 43 43 H 0.97000 * 119.99473 * 353.96690 * 21 20 18 44 44 H 1.08998 * 110.37200 * 143.19182 * 26 17 16 45 45 H 1.09003 * 110.36526 * 265.40803 * 26 17 16 46 46 H 0.96696 * 114.00486 * 298.55307 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 0.4381 -0.2087 -3.1031 7 6 0.0704 0.5083 -4.2263 8 6 0.9103 1.4846 -4.7286 9 6 2.1157 1.7472 -4.1050 10 6 2.4815 1.0331 -2.9793 11 6 2.0324 -0.7104 1.2304 12 8 2.7296 -1.6964 1.1190 13 7 1.7068 -0.2500 2.4546 14 6 2.1947 -0.9410 3.6507 15 1 3.1706 -1.3892 3.4642 16 6 1.1880 -2.0126 4.1197 17 7 1.1541 -1.9663 5.5888 18 6 0.3672 -2.7459 6.3939 19 1 -0.4852 -3.2630 5.9786 20 6 0.6652 -2.8716 7.7438 21 7 1.9084 -2.7473 8.1578 22 14 -0.6983 -3.2171 8.9731 23 1 -0.1227 -3.3049 10.3391 24 1 -1.6966 -2.1187 8.9267 25 1 -1.3597 -4.5019 8.6305 26 6 2.1120 -0.9459 6.0518 27 6 2.2586 0.0309 4.8584 28 1 1.4332 0.7424 4.8322 29 8 3.5152 0.7099 4.9036 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.1263 -0.7993 -1.2056 34 1 1.6054 -1.7197 -1.2953 35 1 -0.2163 -0.9740 -2.7128 36 1 -0.8715 0.3034 -4.7133 37 1 0.6245 2.0424 -5.6081 38 1 2.7716 2.5102 -4.4973 39 1 3.4234 1.2380 -2.4923 40 1 1.1494 0.5389 2.5435 41 1 1.5117 -2.9990 3.7874 42 1 0.1991 -1.7903 3.7188 43 1 2.6273 -2.6554 7.5131 44 1 1.7180 -0.4234 6.9235 45 1 3.0717 -1.4058 6.2878 46 1 3.6400 1.2542 5.6930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198889685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:16 Heat of formation + Delta-G solvation = -71.140680 kcal Electronic energy + Delta-G solvation = -26402.713438 eV Core-core repulsion = 22677.282915 eV Total energy + Delta-G solvation = -3725.430522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42226 -40.25426 -39.54057 -36.90430 -35.97054 -35.75897 -33.73797 -31.89844 -31.67897 -30.08026 -28.97883 -27.67526 -26.33655 -24.69713 -23.35900 -22.59901 -22.27151 -21.76610 -20.84179 -19.68207 -18.62902 -18.22381 -17.54514 -17.27817 -16.56078 -16.24883 -16.16057 -15.85168 -15.74734 -15.55299 -15.39136 -14.83459 -14.71128 -14.32447 -14.20731 -14.04605 -13.93595 -13.66847 -13.35791 -13.29319 -13.19477 -13.07250 -12.65978 -12.54268 -12.23825 -12.11955 -11.90463 -11.87892 -11.78904 -11.74659 -11.71365 -11.21874 -10.82628 -10.60992 -10.22553 -9.76547 -9.57029 -9.14587 -8.39672 -5.43804 0.46565 0.54251 1.55121 1.58099 1.65098 1.84909 1.99626 2.58977 2.88850 2.91556 3.13498 3.44559 3.48842 3.70695 3.84567 3.87340 3.89560 3.94545 4.12011 4.14203 4.22063 4.23408 4.35665 4.38715 4.39866 4.57201 4.69058 4.70212 4.79058 4.83444 4.86071 4.88441 4.92217 5.01304 5.09546 5.20999 5.22074 5.26844 5.36475 5.58434 5.62443 5.67579 5.76954 6.16443 6.21545 6.46387 6.71329 6.78130 7.17864 7.60107 8.14423 8.90863 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.002452 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.249362 B =11414.879135 C =11996.359648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.119 0.881 4 C -0.059 4.059 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.125 4.125 8 C -0.131 4.131 9 C -0.125 4.125 10 C -0.129 4.129 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.700 5.700 14 C 0.156 3.844 15 H 0.074 0.926 16 C 0.131 3.869 17 N -0.617 5.617 18 C -0.352 4.352 19 H 0.063 0.937 20 C -0.076 4.076 21 N -0.940 5.940 22 Si 1.120 2.880 23 H -0.291 1.291 24 H -0.274 1.274 25 H -0.276 1.276 26 C 0.122 3.878 27 C 0.104 3.896 28 H 0.099 0.901 29 O -0.565 6.565 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.417 0.583 41 H 0.005 0.995 42 H 0.046 0.954 43 H 0.253 0.747 44 H 0.042 0.958 45 H 0.008 0.992 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 14.549 -23.063 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.137 0.863 4 C -0.097 4.097 5 C -0.086 4.086 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.148 4.148 9 C -0.143 4.143 10 C -0.147 4.147 11 C 0.303 3.697 12 O -0.464 6.464 13 N -0.352 5.352 14 C 0.049 3.951 15 H 0.092 0.908 16 C 0.004 3.996 17 N -0.346 5.346 18 C -0.480 4.480 19 H 0.081 0.919 20 C -0.272 4.272 21 N -0.582 5.582 22 Si 0.944 3.056 23 H -0.217 1.217 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.004 4.004 27 C 0.043 3.957 28 H 0.116 0.884 29 O -0.373 6.373 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.254 0.746 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.026 0.974 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.901 13.332 -22.066 26.074 hybrid contribution 0.565 0.016 -0.710 0.907 sum -3.336 13.347 -22.776 26.609 Atomic orbital electron populations 1.21872 0.91188 1.02836 1.04173 1.21240 0.98865 1.01010 0.89903 0.86290 1.20320 1.01236 0.97876 0.90224 1.19814 0.95294 0.97076 0.96426 1.21256 0.96208 1.00378 0.96324 1.21429 1.00509 0.96144 0.96223 1.21470 0.94502 0.98250 1.00614 1.21413 0.97333 0.99895 0.95643 1.21262 0.99922 0.96277 0.97218 1.21402 0.78868 0.83987 0.85464 1.90697 1.39927 1.28468 1.87334 1.45748 1.53440 1.31822 1.04227 1.21466 0.96936 0.92255 0.84438 0.90792 1.21722 0.97231 0.95794 0.84831 1.44638 1.47699 1.41240 1.01011 1.20039 1.06169 1.28679 0.93112 0.91919 1.27316 1.01919 0.99081 0.98854 1.70921 0.99372 1.50262 1.37688 0.82802 0.72253 0.77116 0.73472 1.21670 1.19961 1.20228 1.22111 0.92363 0.89910 0.96016 1.23036 0.87000 0.92544 0.93107 0.88377 1.86424 1.36347 1.66025 1.48466 0.89594 0.92824 0.90786 0.91478 0.91458 0.85468 0.84330 0.84214 0.84403 0.85627 0.74564 0.97700 0.93599 0.93633 0.93987 0.97393 0.75032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.67 71.98 0.62 -1.66 16 2 C -0.09 -1.75 2.71 -11.54 -0.03 -1.78 16 3 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 4 C -0.06 -1.23 4.19 29.85 0.13 -1.11 16 5 C -0.09 -1.52 4.70 -19.86 -0.09 -1.62 16 6 C -0.12 -1.95 7.98 22.27 0.18 -1.78 16 7 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 8 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 9 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 10 C -0.13 -2.09 9.70 22.27 0.22 -1.88 16 11 C 0.51 14.96 7.15 87.66 0.63 15.58 16 12 O -0.58 -22.75 15.56 -3.02 -0.05 -22.80 16 13 N -0.70 -19.51 5.01 -436.91 -2.19 -21.69 16 14 C 0.16 5.76 3.04 46.18 0.14 5.90 16 15 H 0.07 3.20 7.55 -2.39 -0.02 3.19 16 16 C 0.13 5.80 7.01 86.73 0.61 6.41 16 17 N -0.62 -31.99 3.29 -691.96 -2.28 -34.27 16 18 C -0.35 -20.16 10.02 84.03 0.84 -19.32 16 19 H 0.06 3.57 7.97 -2.91 -0.02 3.55 16 20 C -0.08 -4.34 5.08 84.86 0.43 -3.91 16 21 N -0.94 -57.94 12.93 21.65 0.28 -57.66 16 22 Si 1.12 50.50 30.00 68.60 2.06 52.56 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 26 C 0.12 5.67 5.04 86.86 0.44 6.10 16 27 C 0.10 3.56 4.06 31.99 0.13 3.69 16 28 H 0.10 2.82 8.01 -2.39 -0.02 2.80 16 29 O -0.56 -17.34 13.47 -148.98 -2.01 -19.35 16 30 H 0.09 1.15 6.28 -2.39 -0.01 1.13 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.01 7.57 -2.39 -0.02 0.99 16 33 H 0.07 1.59 7.90 -2.39 -0.02 1.57 16 34 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.13 1.80 8.05 -2.91 -0.02 1.78 16 36 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.42 8.55 7.98 -92.71 -0.74 7.81 16 41 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 42 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 43 H 0.25 16.04 6.06 -92.71 -0.56 15.48 16 44 H 0.04 2.04 7.95 -2.39 -0.02 2.02 16 45 H 0.01 0.43 6.80 -2.39 -0.02 0.41 16 46 H 0.40 8.73 9.11 -74.06 -0.67 8.05 16 Total: -1.00 -77.00 375.11 0.50 -76.50 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.22 Total: 26.44 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.91 Total: 0.29 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -4.19 Total: -113.63 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -2.05 Total: -42.15 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.06 Total: 52.56 kcal Total: -77.00 0.50 -76.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198889685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.354 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds