Wall clock time and date at job start Fri Apr 10 2020 18:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.54909 * 111.00603 * 236.11615 * 2 1 3 5 5 N 1.47523 * 104.78433 * 204.90137 * 4 2 1 6 6 C 1.36938 * 125.63702 * 204.15649 * 5 4 2 7 7 H 1.08000 * 119.99838 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99820 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00351 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99832 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46876 * 60.00007 * 10 8 6 12 12 H 1.48503 * 109.46776 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47278 * 299.99954 * 10 8 6 14 14 C 1.47022 * 108.71559 * 24.12363 * 5 4 2 15 15 C 1.54330 * 107.27093 * 358.93837 * 14 5 4 16 16 H 1.09005 * 110.71759 * 96.17175 * 15 14 5 17 17 N 1.46491 * 110.87204 * 219.37277 * 15 14 5 18 18 C 1.34776 * 120.00103 * 268.60794 * 17 15 14 19 19 O 1.21620 * 120.00076 * 0.02562 * 18 17 15 20 20 C 1.47330 * 119.99962 * 180.02562 * 18 17 15 21 21 C 1.36573 * 126.20984 * 180.02562 * 20 18 17 22 22 N 1.34870 * 106.78606 * 179.97438 * 21 20 18 23 23 C 1.36309 * 107.85976 * 0.04498 * 22 21 20 24 24 N 1.29789 * 108.92272 * 359.66025 * 23 22 21 25 25 C 1.51107 * 123.90191 * 179.88039 * 23 22 21 26 26 C 1.53397 * 108.18778 * 344.03917 * 25 23 22 27 27 C 1.53141 * 109.25011 * 48.96311 * 26 25 23 28 28 C 1.46575 * 127.49989 * 180.10308 * 22 21 20 29 29 H 1.08994 * 109.46941 * 299.30333 * 1 2 3 30 30 H 1.09004 * 109.46932 * 59.30168 * 1 2 3 31 31 H 1.09002 * 109.47107 * 179.29457 * 1 2 3 32 32 H 1.09001 * 110.36668 * 323.71926 * 4 2 1 33 33 H 1.09004 * 110.36307 * 86.04054 * 4 2 1 34 34 H 0.97003 * 120.00159 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.88478 * 239.52488 * 14 5 4 36 36 H 1.08997 * 110.01216 * 118.42984 * 14 5 4 37 37 H 0.97004 * 120.00282 * 88.61671 * 17 15 14 38 38 H 1.08006 * 126.60697 * 359.97438 * 21 20 18 39 39 H 1.09003 * 109.71558 * 103.70802 * 25 23 22 40 40 H 1.08995 * 109.72300 * 224.36558 * 25 23 22 41 41 H 1.08996 * 109.50607 * 168.89179 * 26 25 23 42 42 H 1.08998 * 109.50337 * 289.03276 * 26 25 23 43 43 H 1.08993 * 109.46119 * 50.22166 * 27 26 25 44 44 H 1.08997 * 109.45502 * 170.19873 * 27 26 25 45 45 H 1.09003 * 109.58693 * 282.58401 * 28 22 21 46 46 H 1.09002 * 109.58358 * 43.00180 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4281 -1.2422 -0.7724 6 6 4.4659 -1.5641 -1.6059 7 1 4.3356 -1.5090 -2.6766 8 6 5.6852 -1.9613 -1.0745 9 7 5.8437 -2.0289 0.2303 10 14 7.1007 -2.4011 -2.2114 11 1 7.4419 -1.2270 -3.0541 12 1 8.2835 -2.7893 -1.4018 13 1 6.7020 -3.5361 -3.0820 14 6 3.4679 -1.2731 0.6969 15 6 2.0861 -0.8074 1.2026 16 1 1.4471 -1.6630 1.4212 17 7 2.2238 0.0492 2.3829 18 6 2.1947 -0.4932 3.6164 19 8 2.0545 -1.6939 3.7495 20 6 2.3326 0.3685 4.8034 21 6 2.3216 -0.0439 6.1054 22 7 2.4764 1.0598 6.8648 23 6 2.5794 2.1315 6.0288 24 7 2.5001 1.7170 4.8015 25 6 2.7612 3.5551 6.5018 26 6 2.4069 3.6130 7.9932 27 6 3.1358 2.4853 8.7295 28 6 2.5309 1.1360 8.3276 29 1 -0.3633 0.5030 0.8961 30 1 -0.3633 0.5247 -0.8837 31 1 -0.3633 -1.0276 -0.0127 32 1 1.4523 -1.6703 -1.4026 33 1 2.1554 -0.1714 -2.0839 34 1 6.6959 -2.3061 0.6017 35 1 4.2425 -0.5982 1.0611 36 1 3.6670 -2.2871 1.0434 37 1 2.3359 1.0069 2.2768 38 1 2.2102 -1.0584 6.4587 39 1 3.7975 3.8608 6.3579 40 1 2.1007 4.2162 5.9410 41 1 2.7154 4.5745 8.4035 42 1 1.3307 3.4922 8.1165 43 1 4.1929 2.5025 8.4647 44 1 3.0285 2.6252 9.8051 45 1 1.5236 1.0515 8.7357 46 1 3.1523 0.3275 8.7127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079794848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:38 Heat of formation + Delta-G solvation = 15.460944 kcal Electronic energy + Delta-G solvation = -26808.113414 eV Core-core repulsion = 23118.730971 eV Total energy + Delta-G solvation = -3689.382443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.41540 -40.76668 -39.05726 -37.35197 -35.61600 -34.50160 -34.10912 -32.18114 -31.12575 -29.66604 -29.37993 -27.39997 -25.97903 -25.09560 -23.86028 -23.11536 -22.05825 -21.53407 -20.75717 -19.96473 -18.89137 -18.59303 -17.43784 -17.29195 -16.99934 -16.85141 -15.91850 -15.60103 -15.51834 -15.22173 -15.01355 -14.86746 -14.72531 -14.57781 -14.40907 -14.10146 -14.04998 -13.71752 -13.34750 -13.05171 -12.85679 -12.77122 -12.57364 -12.25378 -12.09256 -12.06856 -11.97094 -11.89317 -11.85996 -11.67893 -11.48410 -11.32030 -11.04445 -10.74361 -10.69163 -10.03087 -9.46457 -8.93701 -7.83895 -5.22966 0.54366 1.36943 1.43206 1.48588 1.54718 1.64658 2.26532 2.50254 2.52801 3.15029 3.33585 3.53559 3.62462 3.65591 3.75011 3.82497 4.01748 4.05688 4.09487 4.10068 4.34704 4.41248 4.45553 4.49565 4.52052 4.60884 4.71182 4.87080 4.87358 4.92857 4.97618 5.04673 5.06083 5.09672 5.15464 5.22062 5.28129 5.32507 5.42685 5.44441 5.48173 5.60839 5.77462 6.08094 6.15481 6.53254 6.87987 7.05241 7.27101 7.74768 8.39779 9.25212 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.003073 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.234535 B = 9108.408164 C = 9956.385931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.095 4.095 3 H 0.085 0.915 4 C 0.134 3.866 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.091 0.909 8 C -0.074 4.074 9 N -0.955 5.955 10 Si 0.985 3.015 11 H -0.272 1.272 12 H -0.297 1.297 13 H -0.275 1.275 14 C 0.191 3.809 15 C 0.135 3.865 16 H 0.078 0.922 17 N -0.691 5.691 18 C 0.596 3.404 19 O -0.587 6.587 20 C -0.096 4.096 21 C 0.043 3.957 22 N -0.448 5.448 23 C 0.209 3.791 24 N -0.491 5.491 25 C -0.035 4.035 26 C -0.119 4.119 27 C -0.132 4.132 28 C 0.089 3.911 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.244 0.756 35 H 0.012 0.988 36 H -0.008 1.008 37 H 0.411 0.589 38 H 0.201 0.799 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 14.844 20.450 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.115 4.115 3 H 0.103 0.897 4 C 0.009 3.991 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.109 0.891 8 C -0.266 4.266 9 N -0.604 5.604 10 Si 0.813 3.187 11 H -0.197 1.197 12 H -0.224 1.224 13 H -0.200 1.200 14 C 0.065 3.935 15 C 0.029 3.971 16 H 0.096 0.904 17 N -0.340 5.340 18 C 0.384 3.616 19 O -0.468 6.468 20 C -0.224 4.224 21 C -0.099 4.099 22 N -0.129 5.129 23 C -0.056 4.056 24 N -0.211 5.211 25 C -0.074 4.074 26 C -0.157 4.157 27 C -0.170 4.170 28 C -0.030 4.030 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.030 0.970 36 H 0.010 0.990 37 H 0.247 0.753 38 H 0.218 0.782 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.126 0.874 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.824 14.415 19.964 26.898 hybrid contribution 1.275 -1.091 -0.096 1.681 sum -9.549 13.324 19.869 25.758 Atomic orbital electron populations 1.21630 0.91598 1.02327 1.02870 1.22547 0.97447 0.98725 0.92811 0.89661 1.21869 0.85214 0.95842 0.96155 1.44752 1.09570 1.79299 1.01819 1.19517 0.90095 1.37736 0.89868 0.89137 1.25813 1.00886 1.02385 0.97509 1.70269 1.24152 1.54633 1.11304 0.85055 0.77926 0.78414 0.77342 1.19731 1.22380 1.20046 1.21057 0.92422 0.96408 0.83656 1.22127 0.96722 0.93583 0.84685 0.90434 1.45571 1.72422 1.11432 1.04530 1.17354 0.75180 0.86183 0.82855 1.90739 1.53121 1.15961 1.86984 1.20430 1.17600 0.91327 0.93066 1.22617 1.03116 0.93925 0.90217 1.45605 1.51870 1.05769 1.09628 1.24339 1.03607 0.93509 0.84129 1.70286 1.19570 1.09180 1.22043 1.20504 1.04401 0.84803 0.97685 1.21698 1.01348 1.00705 0.91933 1.21959 1.00265 0.91417 1.03327 1.22570 1.04852 1.02007 0.73600 0.91953 0.90077 0.92699 0.95221 0.92416 0.94731 0.97010 0.98965 0.75286 0.78220 0.88495 0.87981 0.87389 0.90734 0.91149 0.86045 0.87400 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.29 71.98 0.67 -2.81 16 2 C -0.10 -3.46 3.26 -9.40 -0.03 -3.49 16 3 H 0.09 2.99 8.01 -2.39 -0.02 2.97 16 4 C 0.13 5.74 6.71 86.84 0.58 6.33 16 5 N -0.63 -34.99 3.40 -691.73 -2.35 -37.34 16 6 C -0.24 -14.48 10.28 84.03 0.86 -13.61 16 7 H 0.09 5.01 7.83 -2.91 -0.02 4.99 16 8 C -0.07 -4.48 5.49 84.86 0.47 -4.01 16 9 N -0.95 -62.79 10.31 21.65 0.22 -62.57 16 10 Si 0.99 48.42 29.55 68.60 2.03 50.45 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 13 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 14 C 0.19 10.84 5.13 86.73 0.44 11.29 16 15 C 0.13 5.96 2.78 46.18 0.13 6.09 16 16 H 0.08 3.60 7.44 -2.38 -0.02 3.59 16 17 N -0.69 -28.19 5.11 -440.26 -2.25 -30.44 16 18 C 0.60 25.33 7.81 86.64 0.68 26.01 16 19 O -0.59 -28.63 16.52 -4.09 -0.07 -28.70 16 20 C -0.10 -3.40 6.98 40.52 0.28 -3.11 16 21 C 0.04 1.17 11.32 83.84 0.95 2.12 16 22 N -0.45 -9.03 3.11 -512.76 -1.60 -10.62 16 23 C 0.21 4.85 7.64 138.05 1.05 5.91 16 24 N -0.49 -15.68 11.00 -176.07 -1.94 -17.62 16 25 C -0.04 -0.46 6.33 30.11 0.19 -0.27 16 26 C -0.12 -0.68 5.96 30.77 0.18 -0.50 16 27 C -0.13 -0.65 5.93 30.72 0.18 -0.47 16 28 C 0.09 0.80 6.96 86.44 0.60 1.41 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.03 1.24 8.03 -2.39 -0.02 1.23 16 33 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.24 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.01 0.74 7.27 -2.39 -0.02 0.73 16 36 H -0.01 -0.52 7.51 -2.39 -0.02 -0.54 16 37 H 0.41 15.34 8.28 -92.71 -0.77 14.58 16 38 H 0.20 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.07 0.42 8.12 -2.39 -0.02 0.40 16 43 H 0.07 0.50 8.11 -2.39 -0.02 0.48 16 44 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -86.77 370.57 1.51 -85.26 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.21 Total: 20.71 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 7.24 Total: 30.87 kcal Atomic # 7 Polarization: -150.68 SS G_CDS: -7.91 Total: -158.59 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.07 Total: -28.70 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -86.77 1.51 -85.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079794848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.722 kcal (2) G-P(sol) polarization free energy of solvation -86.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds