Wall clock time and date at job start Fri Apr 10 2020 18:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47363 * 2 1 4 4 C 1.34946 * 126.03496 * 124.71780 * 3 2 1 5 5 C 1.35323 * 107.74586 * 179.84149 * 4 3 2 6 6 C 1.39874 * 107.91572 * 0.42184 * 5 4 3 7 7 C 1.50700 * 125.89398 * 179.75615 * 6 5 4 8 8 C 1.50700 * 109.46749 * 125.00488 * 7 6 5 9 9 O 1.21274 * 120.00230 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00061 * 180.02562 * 8 7 6 11 11 C 1.47292 * 136.54259 * 359.62306 * 10 8 7 12 12 C 1.54390 * 87.48864 * 151.45515 * 11 10 8 13 13 H 1.09000 * 115.77162 * 141.82169 * 12 11 10 14 14 C 1.53069 * 111.60495 * 274.19656 * 12 11 10 15 15 C 1.53145 * 109.21408 * 142.37643 * 14 12 11 16 16 N 1.46532 * 108.25393 * 301.58947 * 15 14 12 17 17 C 1.36935 * 119.74114 * 236.39853 * 16 15 14 18 18 H 1.07996 * 119.99881 * 25.16825 * 17 16 15 19 19 C 1.38810 * 120.00077 * 205.16618 * 17 16 15 20 20 N 1.31620 * 120.00369 * 14.52041 * 19 17 16 21 21 Si 1.86796 * 119.99915 * 194.52090 * 19 17 16 22 22 H 1.48497 * 109.47468 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47448 * 120.00049 * 21 19 17 24 24 H 1.48498 * 109.47241 * 239.99727 * 21 19 17 25 25 C 1.45708 * 120.52093 * 56.42127 * 16 15 14 26 26 C 1.46463 * 136.54556 * 179.97438 * 10 8 7 27 27 H 1.09005 * 111.43605 * 96.36312 * 26 10 8 28 28 N 1.30837 * 108.20509 * 359.73882 * 6 5 4 29 29 H 1.09003 * 109.47693 * 59.99383 * 1 2 3 30 30 H 1.09003 * 109.47390 * 300.00159 * 1 2 3 31 31 H 1.09000 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47527 * 120.00154 * 2 1 3 33 33 H 1.09008 * 109.47219 * 240.00308 * 2 1 3 34 34 H 1.07995 * 126.13096 * 0.02562 * 4 3 2 35 35 H 1.07997 * 126.04014 * 180.15977 * 5 4 3 36 36 H 1.09005 * 109.47328 * 245.00048 * 7 6 5 37 37 H 1.08998 * 109.47553 * 5.00444 * 7 6 5 38 38 H 1.09004 * 113.52787 * 266.07748 * 11 10 8 39 39 H 1.09002 * 113.52952 * 36.70296 * 11 10 8 40 40 H 1.09008 * 109.51311 * 262.30053 * 14 12 11 41 41 H 1.08998 * 109.51331 * 22.40094 * 14 12 11 42 42 H 1.09004 * 109.70637 * 61.28077 * 15 14 12 43 43 H 1.09004 * 109.70882 * 181.89577 * 15 14 12 44 44 H 0.96996 * 120.00313 * 180.02562 * 20 19 17 45 45 H 1.09001 * 108.78862 * 199.11129 * 25 16 15 46 46 H 1.09002 * 108.78509 * 80.89754 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9225 0.8970 5 6 3.0720 3.2135 0.5459 6 6 2.3121 3.4725 -0.5995 7 6 2.2351 4.7886 -1.3297 8 6 2.5913 4.5804 -2.7791 9 8 2.8799 3.4726 -3.1795 10 7 2.5903 5.6255 -3.6302 11 6 2.3061 7.0685 -3.5510 12 6 3.3012 7.2594 -4.7159 13 1 3.0265 8.0115 -5.4554 14 6 4.7413 7.3840 -4.2122 15 6 5.6797 6.6650 -5.1858 16 7 5.2614 5.2635 -5.2760 17 6 6.1578 4.2675 -4.9941 18 1 6.9955 4.4639 -4.3414 19 6 5.9898 3.0055 -5.5472 20 7 5.1563 2.8325 -6.5511 21 14 6.9466 1.5527 -4.8667 22 1 7.8103 2.0088 -3.7482 23 1 5.9977 0.5230 -4.3719 24 1 7.7928 0.9711 -5.9395 25 6 3.8992 4.9214 -5.6638 26 6 2.8654 5.8383 -5.0529 27 1 1.9479 5.8307 -5.6415 28 7 1.6801 2.3749 -0.9276 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.3110 1.4153 1.7418 35 1 3.7052 3.9201 1.0616 36 1 1.2223 5.1852 -1.2579 37 1 2.9343 5.4944 -0.8814 38 1 1.2787 7.3245 -3.8100 39 1 2.6333 7.5259 -2.6172 40 1 5.0162 8.4371 -4.1522 41 1 4.8223 6.9297 -3.2247 42 1 5.6168 7.1314 -6.1690 43 1 6.7041 6.7198 -4.8172 44 1 5.0387 1.9506 -6.9373 45 1 3.6911 3.8986 -5.3496 46 1 3.8191 4.9758 -6.7495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084358399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:49 Heat of formation + Delta-G solvation = 117.473310 kcal Electronic energy + Delta-G solvation = -27899.855223 eV Core-core repulsion = 24214.896368 eV Total energy + Delta-G solvation = -3684.958855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02834 -40.30812 -37.51465 -35.10811 -34.56640 -32.06946 -31.51445 -30.04040 -29.70396 -29.03400 -27.44414 -26.70659 -23.76804 -23.42973 -22.59415 -21.02436 -20.96065 -20.17305 -19.04202 -17.61979 -16.93245 -16.79149 -15.77994 -15.64587 -15.29940 -15.11445 -14.48834 -14.19810 -14.04792 -13.70063 -13.49295 -13.29186 -13.15229 -12.88904 -12.70531 -12.41710 -12.30904 -12.25135 -12.08049 -11.83225 -11.67716 -11.40414 -11.30143 -10.98681 -10.61498 -10.55677 -10.38147 -10.27093 -10.09304 -9.77578 -9.70030 -9.44907 -9.04224 -8.76493 -8.35041 -8.20041 -7.94535 -6.50742 -5.57686 -2.99077 2.11907 2.64668 2.93214 3.40914 3.51467 3.56253 3.59558 3.60793 4.45067 4.67301 4.77179 4.81766 4.86289 4.93051 5.01484 5.12966 5.25460 5.38556 5.47254 5.53309 5.57443 5.59791 5.64108 5.66496 5.71020 5.82519 5.83505 5.96449 5.99097 6.01117 6.17743 6.23856 6.27969 6.43176 6.47641 6.61882 6.68132 6.84516 6.87362 7.07826 7.20399 7.60209 7.87171 7.98779 8.03826 8.50825 8.66177 8.98804 9.44105 10.08893 10.55864 11.50475 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.005231 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.636229 B = 5351.190552 C = 6927.348753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.045 3.955 5 C -0.264 4.264 6 C 0.086 3.914 7 C -0.050 4.050 8 C 0.540 3.460 9 O -0.497 6.497 10 N -0.637 5.637 11 C 0.096 3.904 12 C -0.114 4.114 13 H 0.090 0.910 14 C -0.114 4.114 15 C 0.148 3.852 16 N -0.584 5.584 17 C -0.249 4.249 18 H 0.062 0.938 19 C 0.012 3.988 20 N -0.904 5.904 21 Si 0.900 3.100 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.293 1.293 25 C 0.167 3.833 26 C 0.119 3.881 27 H 0.069 0.931 28 N -0.257 5.257 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.054 0.946 44 H 0.250 0.750 45 H 0.103 0.897 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 5.024 14.311 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.100 4.100 5 C -0.294 4.294 6 C -0.081 4.081 7 C -0.092 4.092 8 C 0.327 3.673 9 O -0.370 6.370 10 N -0.375 5.375 11 C -0.027 4.027 12 C -0.133 4.133 13 H 0.108 0.892 14 C -0.154 4.154 15 C 0.021 3.979 16 N -0.307 5.307 17 C -0.379 4.379 18 H 0.079 0.921 19 C -0.186 4.186 20 N -0.549 5.549 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.220 1.220 25 C 0.041 3.959 26 C 0.015 3.985 27 H 0.087 0.913 28 N -0.079 5.079 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.121 0.879 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.219 3.291 13.359 17.138 hybrid contribution 0.935 -0.477 1.017 1.461 sum -9.283 2.814 14.376 17.343 Atomic orbital electron populations 1.22038 0.93992 1.02580 1.03499 1.21629 0.95906 0.77880 1.03614 1.48697 1.36101 1.10081 1.20862 1.22426 0.96362 0.94796 0.96433 1.21299 1.09406 0.96916 1.01770 1.21540 0.97240 0.94219 0.95127 1.19932 1.03779 0.92903 0.92622 1.19607 0.78209 0.83205 0.86246 1.90827 1.45808 1.22701 1.77619 1.49459 1.68916 1.07646 1.11448 1.23322 0.98709 0.81433 0.99284 1.22792 0.95911 0.97328 0.97264 0.89234 1.21825 0.93731 0.99108 1.00702 1.20718 0.95645 0.86280 0.95210 1.43460 1.06928 0.99864 1.80433 1.19111 1.06304 0.90368 1.22085 0.92053 1.24882 0.99022 0.98568 0.96177 1.70013 1.39531 1.21627 1.23682 0.86262 0.78994 0.83537 0.78164 1.20544 1.21725 1.22014 1.20187 0.81658 0.98608 0.95446 1.22591 0.98967 0.94580 0.82369 0.91300 1.77396 1.23519 0.96083 1.10893 0.90960 0.92321 0.90939 0.88964 0.89755 0.81348 0.83748 0.88290 0.87746 0.90698 0.91126 0.92778 0.92092 0.96384 0.92704 0.93969 0.87877 0.95517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.10 37.15 0.38 -1.25 16 2 C 0.13 1.47 7.23 -4.05 -0.03 1.44 16 3 N -0.37 -5.74 3.68 -61.37 -0.23 -5.96 16 4 C 0.05 0.61 11.45 -17.22 -0.20 0.41 16 5 C -0.26 -3.94 10.72 -40.01 -0.43 -4.37 16 6 C 0.09 1.51 6.02 -82.40 -0.50 1.02 16 7 C -0.05 -0.79 6.13 -29.03 -0.18 -0.97 16 8 C 0.54 11.23 8.00 -10.98 -0.09 11.14 16 9 O -0.50 -13.26 14.80 5.56 0.08 -13.17 16 10 N -0.64 -11.88 3.33 -187.53 -0.62 -12.51 16 11 C 0.10 1.28 7.80 -11.38 -0.09 1.19 16 12 C -0.11 -1.76 4.57 -90.15 -0.41 -2.17 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.11 -1.92 5.71 -26.62 -0.15 -2.07 16 15 C 0.15 3.14 6.46 -3.95 -0.03 3.11 16 16 N -0.58 -15.40 3.03 -174.91 -0.53 -15.93 16 17 C -0.25 -7.37 9.53 -15.06 -0.14 -7.51 16 18 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 19 C 0.01 0.36 4.94 -17.43 -0.09 0.28 16 20 N -0.90 -28.45 10.94 55.49 0.61 -27.84 16 21 Si 0.90 24.35 29.58 -169.99 -5.03 19.32 16 22 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -8.14 7.11 56.52 0.40 -7.74 16 24 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 25 C 0.17 4.31 4.59 -5.43 -0.02 4.29 16 26 C 0.12 2.36 4.02 -77.71 -0.31 2.05 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 N -0.26 -4.88 11.76 33.67 0.40 -4.48 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.10 1.37 8.12 -51.93 -0.42 0.95 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 44 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.10 3.16 4.95 -51.93 -0.26 2.90 16 46 H 0.03 0.74 7.99 -51.93 -0.42 0.33 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -39.18 372.16 -9.36 -48.54 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.36 Total: -0.15 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.29 Total: 6.58 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.38 Total: -66.73 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.03 Total: 19.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.18 -9.36 -48.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084358399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.017 kcal (2) G-P(sol) polarization free energy of solvation -39.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds