Wall clock time and date at job start Fri Apr 10 2020 18:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47363 * 2 1 4 4 C 1.34946 * 126.03496 * 124.71780 * 3 2 1 5 5 C 1.35323 * 107.74586 * 179.84149 * 4 3 2 6 6 C 1.39874 * 107.91572 * 0.42184 * 5 4 3 7 7 C 1.50700 * 125.89398 * 179.75615 * 6 5 4 8 8 C 1.50700 * 109.46749 * 125.00488 * 7 6 5 9 9 O 1.21274 * 120.00230 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00061 * 180.02562 * 8 7 6 11 11 C 1.47292 * 136.54259 * 359.62306 * 10 8 7 12 12 C 1.54390 * 87.48864 * 151.45515 * 11 10 8 13 13 H 1.09000 * 115.77162 * 141.82169 * 12 11 10 14 14 C 1.53069 * 111.60495 * 274.19656 * 12 11 10 15 15 C 1.53145 * 109.21408 * 142.37643 * 14 12 11 16 16 N 1.46532 * 108.25393 * 301.58947 * 15 14 12 17 17 C 1.36935 * 119.74114 * 236.39853 * 16 15 14 18 18 H 1.07996 * 119.99881 * 25.16825 * 17 16 15 19 19 C 1.38810 * 120.00077 * 205.16618 * 17 16 15 20 20 N 1.31620 * 120.00369 * 14.52041 * 19 17 16 21 21 Si 1.86796 * 119.99915 * 194.52090 * 19 17 16 22 22 H 1.48497 * 109.47468 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47448 * 120.00049 * 21 19 17 24 24 H 1.48498 * 109.47241 * 239.99727 * 21 19 17 25 25 C 1.45708 * 120.52093 * 56.42127 * 16 15 14 26 26 C 1.46463 * 136.54556 * 179.97438 * 10 8 7 27 27 H 1.09005 * 111.43605 * 96.36312 * 26 10 8 28 28 N 1.30837 * 108.20509 * 359.73882 * 6 5 4 29 29 H 1.09003 * 109.47693 * 59.99383 * 1 2 3 30 30 H 1.09003 * 109.47390 * 300.00159 * 1 2 3 31 31 H 1.09000 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47527 * 120.00154 * 2 1 3 33 33 H 1.09008 * 109.47219 * 240.00308 * 2 1 3 34 34 H 1.07995 * 126.13096 * 0.02562 * 4 3 2 35 35 H 1.07997 * 126.04014 * 180.15977 * 5 4 3 36 36 H 1.09005 * 109.47328 * 245.00048 * 7 6 5 37 37 H 1.08998 * 109.47553 * 5.00444 * 7 6 5 38 38 H 1.09004 * 113.52787 * 266.07748 * 11 10 8 39 39 H 1.09002 * 113.52952 * 36.70296 * 11 10 8 40 40 H 1.09008 * 109.51311 * 262.30053 * 14 12 11 41 41 H 1.08998 * 109.51331 * 22.40094 * 14 12 11 42 42 H 1.09004 * 109.70637 * 61.28077 * 15 14 12 43 43 H 1.09004 * 109.70882 * 181.89577 * 15 14 12 44 44 H 0.96996 * 120.00313 * 180.02562 * 20 19 17 45 45 H 1.09001 * 108.78862 * 199.11129 * 25 16 15 46 46 H 1.09002 * 108.78509 * 80.89754 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9225 0.8970 5 6 3.0720 3.2135 0.5459 6 6 2.3121 3.4725 -0.5995 7 6 2.2351 4.7886 -1.3297 8 6 2.5913 4.5804 -2.7791 9 8 2.8799 3.4726 -3.1795 10 7 2.5903 5.6255 -3.6302 11 6 2.3061 7.0685 -3.5510 12 6 3.3012 7.2594 -4.7159 13 1 3.0265 8.0115 -5.4554 14 6 4.7413 7.3840 -4.2122 15 6 5.6797 6.6650 -5.1858 16 7 5.2614 5.2635 -5.2760 17 6 6.1578 4.2675 -4.9941 18 1 6.9955 4.4639 -4.3414 19 6 5.9898 3.0055 -5.5472 20 7 5.1563 2.8325 -6.5511 21 14 6.9466 1.5527 -4.8667 22 1 7.8103 2.0088 -3.7482 23 1 5.9977 0.5230 -4.3719 24 1 7.7928 0.9711 -5.9395 25 6 3.8992 4.9214 -5.6638 26 6 2.8654 5.8383 -5.0529 27 1 1.9479 5.8307 -5.6415 28 7 1.6801 2.3749 -0.9276 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.3110 1.4153 1.7418 35 1 3.7052 3.9201 1.0616 36 1 1.2223 5.1852 -1.2579 37 1 2.9343 5.4944 -0.8814 38 1 1.2787 7.3245 -3.8100 39 1 2.6333 7.5259 -2.6172 40 1 5.0162 8.4371 -4.1522 41 1 4.8223 6.9297 -3.2247 42 1 5.6168 7.1314 -6.1690 43 1 6.7041 6.7198 -4.8172 44 1 5.0387 1.9506 -6.9373 45 1 3.6911 3.8986 -5.3496 46 1 3.8191 4.9758 -6.7495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084358399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:48 Heat of formation + Delta-G solvation = 89.307902 kcal Electronic energy + Delta-G solvation = -27901.076567 eV Core-core repulsion = 24214.896368 eV Total energy + Delta-G solvation = -3686.180199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17243 -41.71292 -39.10155 -37.02266 -35.58840 -33.97852 -32.71267 -31.87140 -30.98171 -30.34685 -28.89749 -28.22693 -25.65136 -24.67778 -23.92451 -22.60547 -22.01629 -21.57618 -20.32280 -19.43274 -18.41194 -17.96341 -17.42037 -17.30136 -16.72785 -16.29654 -16.20719 -15.72971 -15.35951 -15.19947 -15.02153 -14.59879 -14.49446 -14.36959 -14.22674 -13.84642 -13.60115 -13.51977 -13.28025 -13.14740 -12.97826 -12.84664 -12.76602 -12.70076 -12.30704 -12.27069 -12.17941 -11.95910 -11.69752 -11.45007 -11.41561 -11.03953 -10.67019 -10.33843 -10.12707 -9.44610 -9.41420 -8.67736 -7.86766 -5.29579 1.02555 1.28313 1.35884 1.41284 1.66519 1.75517 1.92718 2.24703 2.44978 3.29671 3.47735 3.49169 3.72191 3.75514 3.86447 3.98167 4.03507 4.09063 4.28891 4.30690 4.32656 4.47780 4.51716 4.60916 4.64527 4.66877 4.74784 4.76702 4.81207 4.86578 4.90942 4.93997 4.99058 5.09273 5.11937 5.18061 5.21118 5.37152 5.46397 5.55752 5.71872 5.76449 5.84503 6.24536 6.38787 6.85210 7.08633 7.18476 7.49103 7.96860 8.34543 9.17434 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.005231 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.636229 B = 5351.190552 C = 6927.348753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.120 3.880 3 N -0.383 5.383 4 C 0.052 3.948 5 C -0.284 4.284 6 C 0.062 3.938 7 C -0.038 4.038 8 C 0.527 3.473 9 O -0.574 6.574 10 N -0.643 5.643 11 C 0.112 3.888 12 C -0.101 4.101 13 H 0.128 0.872 14 C -0.102 4.102 15 C 0.138 3.862 16 N -0.601 5.601 17 C -0.249 4.249 18 H 0.061 0.939 19 C -0.047 4.047 20 N -0.934 5.934 21 Si 0.953 3.047 22 H -0.264 1.264 23 H -0.311 1.311 24 H -0.281 1.281 25 C 0.183 3.817 26 C 0.102 3.898 27 H 0.082 0.918 28 N -0.316 5.316 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.065 0.935 34 H 0.215 0.785 35 H 0.169 0.831 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.025 0.975 43 H 0.051 0.949 44 H 0.241 0.759 45 H 0.047 0.953 46 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 7.886 17.375 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.000 4.000 3 N -0.166 5.166 4 C -0.093 4.093 5 C -0.313 4.313 6 C -0.105 4.105 7 C -0.079 4.079 8 C 0.317 3.683 9 O -0.453 6.453 10 N -0.379 5.379 11 C -0.009 4.009 12 C -0.120 4.120 13 H 0.145 0.855 14 C -0.141 4.141 15 C 0.013 3.987 16 N -0.325 5.325 17 C -0.380 4.380 18 H 0.079 0.921 19 C -0.242 4.242 20 N -0.581 5.581 21 Si 0.783 3.217 22 H -0.189 1.189 23 H -0.240 1.240 24 H -0.208 1.208 25 C 0.056 3.944 26 C -0.003 4.003 27 H 0.100 0.900 28 N -0.139 5.139 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.186 0.814 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -10.498 6.257 16.438 20.483 hybrid contribution 1.053 -1.356 0.025 1.717 sum -9.445 4.902 16.463 19.603 Atomic orbital electron populations 1.21962 0.93213 1.03915 1.02071 1.21988 0.96721 0.76495 1.04805 1.49053 1.36369 1.10704 1.20522 1.23206 0.94846 0.94642 0.96643 1.21710 1.09853 0.98253 1.01510 1.22021 0.97731 0.94577 0.96149 1.19981 1.06024 0.93120 0.88769 1.20586 0.76922 0.82533 0.88283 1.90797 1.49331 1.25873 1.79252 1.49656 1.67859 1.09924 1.10506 1.23556 1.00041 0.77343 0.99911 1.22836 0.95809 0.94426 0.98954 0.85453 1.21706 0.93326 1.00931 0.98169 1.20999 0.96946 0.83841 0.96927 1.43709 1.06827 1.01573 1.80349 1.19420 1.06302 0.91440 1.20819 0.92110 1.25578 1.00602 1.00992 0.96984 1.70187 1.41469 1.21229 1.25259 0.85404 0.77716 0.80407 0.78211 1.18873 1.23992 1.20804 1.19755 0.83425 0.97629 0.93587 1.22622 0.97733 0.96401 0.83510 0.90038 1.77300 1.25775 0.97645 1.13186 0.94325 0.91659 0.88172 0.84558 0.91672 0.76796 0.81371 0.85462 0.84734 0.87091 0.87672 0.87976 0.93519 0.95719 0.93024 0.94947 0.93489 0.99403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 10.10 71.98 0.73 -2.30 16 2 C 0.12 2.64 7.23 86.38 0.62 3.26 16 3 N -0.38 -11.70 3.68 -348.07 -1.28 -12.98 16 4 C 0.05 1.31 11.45 83.54 0.96 2.27 16 5 C -0.28 -8.06 10.72 21.99 0.24 -7.83 16 6 C 0.06 2.16 6.02 43.10 0.26 2.42 16 7 C -0.04 -1.13 6.13 29.10 0.18 -0.95 16 8 C 0.53 22.13 8.00 87.66 0.70 22.83 16 9 O -0.57 -32.56 14.80 -3.01 -0.04 -32.61 16 10 N -0.64 -23.09 3.33 -865.60 -2.88 -25.97 16 11 C 0.11 2.41 7.80 81.19 0.63 3.04 16 12 C -0.10 -2.71 4.57 -10.49 -0.05 -2.76 16 13 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 14 C -0.10 -3.04 5.71 30.67 0.18 -2.87 16 15 C 0.14 5.67 6.46 86.42 0.56 6.23 16 16 N -0.60 -32.52 3.03 -707.28 -2.14 -34.66 16 17 C -0.25 -15.25 9.53 84.03 0.80 -14.45 16 18 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 19 C -0.05 -2.98 4.94 84.86 0.42 -2.56 16 20 N -0.93 -62.70 10.94 21.65 0.24 -62.47 16 21 Si 0.95 52.33 29.58 68.60 2.03 54.36 16 22 H -0.26 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.31 -18.05 7.11 99.48 0.71 -17.34 16 24 H -0.28 -14.76 7.11 99.48 0.71 -14.06 16 25 C 0.18 9.89 4.59 85.90 0.39 10.29 16 26 C 0.10 3.99 4.02 38.68 0.16 4.15 16 27 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 28 N -0.32 -12.42 11.76 -47.38 -0.56 -12.98 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.14 1.73 8.07 -2.39 -0.02 1.71 16 33 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.17 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 37 H 0.13 3.10 8.12 -2.39 -0.02 3.08 16 38 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.11 1.64 8.07 -2.39 -0.02 1.62 16 40 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.05 1.54 7.69 -2.39 -0.02 1.52 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 2.11 7.87 -2.39 -0.02 2.09 16 44 H 0.24 15.91 8.31 -92.71 -0.77 15.13 16 45 H 0.05 3.09 4.95 -2.39 -0.01 3.08 16 46 H -0.01 -0.70 7.99 -2.39 -0.02 -0.72 16 Total: -1.00 -97.75 372.16 3.09 -94.65 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.96 Total: 11.87 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 6.77 Total: 20.78 kcal Atomic # 7 Polarization: -142.44 SS G_CDS: -6.62 Total: -149.06 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.04 Total: -32.61 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.03 Total: 54.36 kcal Total: -97.75 3.09 -94.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084358399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.962 kcal (2) G-P(sol) polarization free energy of solvation -97.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds