Wall clock time and date at job start Fri Apr 10 2020 18:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40087 * 126.03646 * 2 1 4 4 C 1.30837 * 108.20305 * 180.23590 * 3 2 1 5 5 C 1.39875 * 108.20301 * 359.78586 * 4 3 2 6 6 C 1.34954 * 126.03633 * 179.85847 * 2 1 3 7 7 C 1.50692 * 126.12689 * 0.02761 * 6 2 1 8 8 C 1.52999 * 109.47281 * 264.71875 * 7 6 2 9 9 C 1.50703 * 109.47152 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00044 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99893 * 180.02562 * 9 8 7 12 12 C 1.47291 * 136.54312 * 359.97438 * 11 9 8 13 13 C 1.54079 * 87.60181 * 151.38941 * 12 11 9 14 14 H 1.09005 * 115.04094 * 141.63053 * 13 12 11 15 15 C 1.53066 * 111.39610 * 273.97102 * 13 12 11 16 16 C 1.52703 * 109.28026 * 142.29131 * 15 13 12 17 17 N 1.46531 * 108.49134 * 301.79659 * 16 15 13 18 18 C 1.36944 * 119.73747 * 236.40134 * 17 16 15 19 19 H 1.08001 * 119.99531 * 25.04320 * 18 17 16 20 20 C 1.38812 * 119.99948 * 205.31114 * 18 17 16 21 21 N 1.31615 * 119.99973 * 13.89340 * 20 18 17 22 22 Si 1.86798 * 119.99710 * 193.88868 * 20 18 17 23 23 H 1.48495 * 109.47274 * 60.00536 * 22 20 18 24 24 H 1.48507 * 109.46858 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47214 * 300.00160 * 22 20 18 26 26 C 1.45697 * 120.52780 * 56.12392 * 17 16 15 27 27 C 1.46465 * 136.54212 * 179.97438 * 11 9 8 28 28 H 1.08998 * 111.43859 * 97.09441 * 27 11 9 29 29 H 1.09002 * 109.46605 * 270.14565 * 1 2 3 30 30 H 1.08994 * 109.47660 * 30.14604 * 1 2 3 31 31 H 1.09003 * 109.47232 * 150.14966 * 1 2 3 32 32 H 1.07998 * 125.89539 * 179.81403 * 4 3 2 33 33 H 1.07997 * 126.03689 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47318 * 144.71360 * 7 6 2 35 35 H 1.09003 * 109.47511 * 24.72002 * 7 6 2 36 36 H 1.08991 * 109.47312 * 60.00017 * 8 7 6 37 37 H 1.08998 * 109.46776 * 299.99741 * 8 7 6 38 38 H 1.08995 * 113.52654 * 266.07477 * 12 11 9 39 39 H 1.09000 * 113.52415 * 36.70665 * 12 11 9 40 40 H 1.08997 * 109.51424 * 262.32820 * 15 13 12 41 41 H 1.08997 * 109.51035 * 22.43362 * 15 13 12 42 42 H 1.09003 * 109.61869 * 182.01275 * 16 15 13 43 43 H 1.08998 * 109.55749 * 61.54587 * 16 15 13 44 44 H 0.96999 * 120.00291 * 179.97438 * 21 20 18 45 45 H 1.09001 * 108.78805 * 81.15984 * 26 17 16 46 46 H 1.08999 * 108.79225 * 199.49101 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 -0.0051 5 6 3.5437 -0.6666 -0.0036 6 6 2.2590 -1.0913 0.0027 7 6 1.7974 -2.5258 0.0057 8 6 1.7670 -3.0488 1.4431 9 6 1.3060 -4.4836 1.4460 10 8 1.0286 -5.0335 0.4013 11 7 1.2010 -5.1554 2.6097 12 6 1.4304 -4.8662 4.0356 13 6 0.3463 -5.9132 4.3558 14 1 0.5483 -6.5344 5.2285 15 6 -1.0532 -5.2939 4.3294 16 6 -2.0359 -6.2944 3.7251 17 7 -1.5761 -6.6416 2.3778 18 6 -2.4096 -6.4573 1.3070 19 1 -3.1983 -5.7212 1.3571 20 6 -2.2443 -7.2205 0.1594 21 7 -1.4833 -8.2939 0.1869 22 14 -3.1022 -6.7241 -1.4239 23 1 -2.6512 -5.3679 -1.8271 24 1 -2.7663 -7.6966 -2.4948 25 1 -4.5714 -6.7135 -1.2086 26 6 -0.2369 -7.1757 2.1676 27 6 0.8072 -6.5027 3.0278 28 1 1.6759 -7.1456 3.1698 29 1 -0.3632 0.0026 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3634 -0.8913 -0.5115 32 1 4.4054 1.3710 -0.0093 33 1 4.4211 -1.2963 -0.0064 34 1 2.4849 -3.1299 -0.5864 35 1 0.7976 -2.5867 -0.4244 36 1 1.0795 -2.4448 2.0351 37 1 2.7668 -2.9880 1.8731 38 1 2.4243 -5.1488 4.3825 39 1 1.1544 -3.8518 4.3237 40 1 -1.3615 -5.0474 5.3454 41 1 -1.0391 -4.3882 3.7233 42 1 -3.0279 -5.8458 3.6707 43 1 -2.0709 -7.1909 4.3440 44 1 -1.3680 -8.8275 -0.6149 45 1 -0.2446 -8.2418 2.3944 46 1 0.0340 -7.0420 1.1203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084382007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:56 Heat of formation + Delta-G solvation = 110.973201 kcal Electronic energy + Delta-G solvation = -27722.713868 eV Core-core repulsion = 24037.473147 eV Total energy + Delta-G solvation = -3685.240721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30525 -40.51602 -37.89764 -35.22148 -34.02254 -32.98215 -32.17092 -30.18297 -29.88084 -28.46495 -26.94482 -26.78778 -24.56266 -23.83015 -22.57272 -21.20347 -21.07066 -19.85522 -19.49534 -17.78212 -17.21288 -16.45225 -15.92183 -15.82184 -15.58025 -15.16504 -14.97138 -14.38031 -14.13689 -13.81067 -13.67638 -13.34841 -13.26371 -12.91664 -12.84934 -12.66483 -12.49567 -12.42363 -12.15852 -12.02713 -11.82202 -11.46564 -11.12040 -11.09335 -10.67535 -10.65974 -10.65288 -10.48763 -10.20832 -9.88514 -9.78645 -9.59010 -9.35579 -8.95398 -8.56577 -8.30320 -8.11574 -6.59541 -5.66004 -3.08343 1.78704 2.45311 2.75815 3.19248 3.30187 3.45773 3.51947 3.53302 4.43048 4.50830 4.58877 4.67176 4.92688 4.94811 5.00830 5.09734 5.11031 5.19738 5.34970 5.42365 5.47037 5.48025 5.51830 5.56929 5.61028 5.68883 5.72411 5.76530 5.88997 6.03561 6.12245 6.13976 6.20199 6.32040 6.37555 6.51674 6.58367 6.58754 6.77197 6.93409 6.98313 7.49989 7.64587 7.76672 7.93520 8.34387 8.57276 8.75353 9.35441 9.99637 10.47165 11.42244 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.004384 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.279204 B = 6384.744072 C = 7628.100505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.370 5.370 3 N -0.305 5.305 4 C 0.044 3.956 5 C -0.277 4.277 6 C 0.095 3.905 7 C -0.045 4.045 8 C -0.123 4.123 9 C 0.538 3.462 10 O -0.515 6.515 11 N -0.633 5.633 12 C 0.095 3.905 13 C -0.115 4.115 14 H 0.091 0.909 15 C -0.114 4.114 16 C 0.148 3.852 17 N -0.584 5.584 18 C -0.255 4.255 19 H 0.061 0.939 20 C 0.013 3.987 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.168 3.832 27 C 0.118 3.882 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.252 0.748 45 H 0.029 0.971 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.124 12.528 7.253 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.153 5.153 3 N -0.126 5.126 4 C -0.141 4.141 5 C -0.306 4.306 6 C -0.033 4.033 7 C -0.084 4.084 8 C -0.163 4.163 9 C 0.327 3.673 10 O -0.390 6.390 11 N -0.370 5.370 12 C -0.028 4.028 13 C -0.134 4.134 14 H 0.109 0.891 15 C -0.153 4.153 16 C 0.021 3.979 17 N -0.307 5.307 18 C -0.384 4.384 19 H 0.079 0.921 20 C -0.186 4.186 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.042 3.958 27 C 0.014 3.986 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.198 0.802 33 H 0.164 0.836 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.076 13.245 6.291 16.740 hybrid contribution 0.349 -0.360 -0.722 0.879 sum 8.425 12.886 5.570 16.372 Atomic orbital electron populations 1.21918 0.74264 1.04741 1.03643 1.48539 1.06609 1.03396 1.56727 1.77334 1.01876 1.08123 1.25258 1.23793 0.95177 0.95087 1.00061 1.21246 0.96303 0.94967 1.18079 1.21175 0.91287 0.90455 1.00364 1.20022 1.03952 0.87531 0.96908 1.21486 1.03139 0.94044 0.97663 1.19801 0.78009 0.87520 0.81968 1.90799 1.48512 1.69634 1.30082 1.49473 1.66665 1.15766 1.05090 1.23303 0.98732 0.99841 0.80947 1.22774 0.95448 0.97434 0.97769 0.89108 1.21746 0.94175 0.99863 0.99549 1.20629 0.95078 0.94731 0.87422 1.43437 1.10428 1.75720 1.01100 1.19034 1.11710 1.14729 0.92924 0.92121 1.24910 0.99329 0.95299 0.99029 1.69987 1.41993 1.15086 1.27722 0.86389 0.78783 0.77891 0.83739 1.21132 1.21682 1.21211 1.20179 0.81985 0.93508 1.00131 1.22654 0.98142 0.84931 0.92877 0.91116 0.90589 0.89305 0.89004 0.80191 0.83596 0.88275 0.89580 0.89692 0.89095 0.90543 0.91239 0.92710 0.92243 0.92694 0.96349 0.93749 0.95352 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 11.27 59.85 0.67 1.65 16 2 N -0.37 -4.81 4.01 -63.88 -0.26 -5.07 16 3 N -0.30 -4.18 12.58 30.63 0.39 -3.79 16 4 C 0.04 0.51 12.03 -17.36 -0.21 0.30 16 5 C -0.28 -3.26 10.72 -40.01 -0.43 -3.69 16 6 C 0.10 1.22 6.18 -82.27 -0.51 0.71 16 7 C -0.04 -0.60 4.79 -27.89 -0.13 -0.73 16 8 C -0.12 -1.63 5.54 -27.88 -0.15 -1.78 16 9 C 0.54 9.86 8.01 -10.98 -0.09 9.77 16 10 O -0.52 -12.07 15.22 5.56 0.08 -11.98 16 11 N -0.63 -10.86 3.33 -187.70 -0.63 -11.48 16 12 C 0.10 1.20 7.77 -11.53 -0.09 1.11 16 13 C -0.11 -1.68 4.57 -90.31 -0.41 -2.10 16 14 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.11 -1.82 5.68 -26.85 -0.15 -1.97 16 16 C 0.15 2.99 6.43 -4.18 -0.03 2.97 16 17 N -0.58 -14.65 3.03 -175.18 -0.53 -15.18 16 18 C -0.25 -7.16 9.53 -15.06 -0.14 -7.30 16 19 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 20 C 0.01 0.38 4.96 -17.43 -0.09 0.29 16 21 N -0.90 -27.13 10.93 55.49 0.61 -26.52 16 22 Si 0.90 22.96 29.58 -169.99 -5.03 17.93 16 23 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 C 0.17 4.10 4.59 -5.43 -0.02 4.07 16 27 C 0.12 2.18 4.03 -77.68 -0.31 1.87 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.91 6.97 -51.93 -0.36 0.54 16 32 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 35 H 0.09 1.25 6.90 -51.93 -0.36 0.90 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.04 7.68 -51.93 -0.40 0.64 16 42 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.03 0.75 7.99 -51.93 -0.41 0.34 16 46 H 0.10 2.97 4.96 -51.93 -0.26 2.71 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -35.39 370.15 -9.12 -44.50 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.23 Total: 0.84 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.10 Total: 5.17 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.42 Total: -62.05 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.39 -9.12 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084382007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.478 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds