Wall clock time and date at job start Fri Apr 10 2020 18:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40087 * 126.03646 * 2 1 4 4 C 1.30837 * 108.20305 * 180.23590 * 3 2 1 5 5 C 1.39875 * 108.20301 * 359.78586 * 4 3 2 6 6 C 1.34954 * 126.03633 * 179.85847 * 2 1 3 7 7 C 1.50692 * 126.12689 * 0.02761 * 6 2 1 8 8 C 1.52999 * 109.47281 * 264.71875 * 7 6 2 9 9 C 1.50703 * 109.47152 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00044 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99893 * 180.02562 * 9 8 7 12 12 C 1.47291 * 136.54312 * 359.97438 * 11 9 8 13 13 C 1.54079 * 87.60181 * 151.38941 * 12 11 9 14 14 H 1.09005 * 115.04094 * 141.63053 * 13 12 11 15 15 C 1.53066 * 111.39610 * 273.97102 * 13 12 11 16 16 C 1.52703 * 109.28026 * 142.29131 * 15 13 12 17 17 N 1.46531 * 108.49134 * 301.79659 * 16 15 13 18 18 C 1.36944 * 119.73747 * 236.40134 * 17 16 15 19 19 H 1.08001 * 119.99531 * 25.04320 * 18 17 16 20 20 C 1.38812 * 119.99948 * 205.31114 * 18 17 16 21 21 N 1.31615 * 119.99973 * 13.89340 * 20 18 17 22 22 Si 1.86798 * 119.99710 * 193.88868 * 20 18 17 23 23 H 1.48495 * 109.47274 * 60.00536 * 22 20 18 24 24 H 1.48507 * 109.46858 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47214 * 300.00160 * 22 20 18 26 26 C 1.45697 * 120.52780 * 56.12392 * 17 16 15 27 27 C 1.46465 * 136.54212 * 179.97438 * 11 9 8 28 28 H 1.08998 * 111.43859 * 97.09441 * 27 11 9 29 29 H 1.09002 * 109.46605 * 270.14565 * 1 2 3 30 30 H 1.08994 * 109.47660 * 30.14604 * 1 2 3 31 31 H 1.09003 * 109.47232 * 150.14966 * 1 2 3 32 32 H 1.07998 * 125.89539 * 179.81403 * 4 3 2 33 33 H 1.07997 * 126.03689 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47318 * 144.71360 * 7 6 2 35 35 H 1.09003 * 109.47511 * 24.72002 * 7 6 2 36 36 H 1.08991 * 109.47312 * 60.00017 * 8 7 6 37 37 H 1.08998 * 109.46776 * 299.99741 * 8 7 6 38 38 H 1.08995 * 113.52654 * 266.07477 * 12 11 9 39 39 H 1.09000 * 113.52415 * 36.70665 * 12 11 9 40 40 H 1.08997 * 109.51424 * 262.32820 * 15 13 12 41 41 H 1.08997 * 109.51035 * 22.43362 * 15 13 12 42 42 H 1.09003 * 109.61869 * 182.01275 * 16 15 13 43 43 H 1.08998 * 109.55749 * 61.54587 * 16 15 13 44 44 H 0.96999 * 120.00291 * 179.97438 * 21 20 18 45 45 H 1.09001 * 108.78805 * 81.15984 * 26 17 16 46 46 H 1.08999 * 108.79225 * 199.49101 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 -0.0051 5 6 3.5437 -0.6666 -0.0036 6 6 2.2590 -1.0913 0.0027 7 6 1.7974 -2.5258 0.0057 8 6 1.7670 -3.0488 1.4431 9 6 1.3060 -4.4836 1.4460 10 8 1.0286 -5.0335 0.4013 11 7 1.2010 -5.1554 2.6097 12 6 1.4304 -4.8662 4.0356 13 6 0.3463 -5.9132 4.3558 14 1 0.5483 -6.5344 5.2285 15 6 -1.0532 -5.2939 4.3294 16 6 -2.0359 -6.2944 3.7251 17 7 -1.5761 -6.6416 2.3778 18 6 -2.4096 -6.4573 1.3070 19 1 -3.1983 -5.7212 1.3571 20 6 -2.2443 -7.2205 0.1594 21 7 -1.4833 -8.2939 0.1869 22 14 -3.1022 -6.7241 -1.4239 23 1 -2.6512 -5.3679 -1.8271 24 1 -2.7663 -7.6966 -2.4948 25 1 -4.5714 -6.7135 -1.2086 26 6 -0.2369 -7.1757 2.1676 27 6 0.8072 -6.5027 3.0278 28 1 1.6759 -7.1456 3.1698 29 1 -0.3632 0.0026 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3634 -0.8913 -0.5115 32 1 4.4054 1.3710 -0.0093 33 1 4.4211 -1.2963 -0.0064 34 1 2.4849 -3.1299 -0.5864 35 1 0.7976 -2.5867 -0.4244 36 1 1.0795 -2.4448 2.0351 37 1 2.7668 -2.9880 1.8731 38 1 2.4243 -5.1488 4.3825 39 1 1.1544 -3.8518 4.3237 40 1 -1.3615 -5.0474 5.3454 41 1 -1.0391 -4.3882 3.7233 42 1 -3.0279 -5.8458 3.6707 43 1 -2.0709 -7.1909 4.3440 44 1 -1.3680 -8.8275 -0.6149 45 1 -0.2446 -8.2418 2.3944 46 1 0.0340 -7.0420 1.1203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084382007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:55 Heat of formation + Delta-G solvation = 87.244144 kcal Electronic energy + Delta-G solvation = -27723.742837 eV Core-core repulsion = 24037.473147 eV Total energy + Delta-G solvation = -3686.269690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23854 -41.83835 -39.33744 -37.03210 -35.09029 -33.99778 -33.88400 -31.91459 -31.19298 -29.72756 -28.56174 -27.62534 -25.80784 -25.56549 -24.00959 -22.59660 -22.07833 -21.11857 -20.54212 -19.45504 -18.58201 -17.73894 -17.37425 -17.10917 -16.94794 -16.43003 -16.21101 -15.92656 -15.46341 -15.25461 -14.95808 -14.73579 -14.54393 -14.35851 -14.08127 -13.88396 -13.71246 -13.53118 -13.34895 -13.20386 -13.13128 -12.98954 -12.75818 -12.64430 -12.31632 -12.21985 -12.17696 -11.96625 -11.70638 -11.60408 -11.47155 -11.06245 -10.66946 -10.37620 -10.19952 -9.48699 -9.46826 -8.65367 -7.83678 -5.27485 0.84933 1.36207 1.42887 1.46037 1.58969 1.83831 1.86941 2.07657 2.49219 3.31715 3.37303 3.47959 3.68992 3.74611 3.83626 3.90104 3.95908 4.04606 4.27171 4.32139 4.33338 4.46283 4.49977 4.56567 4.58334 4.59043 4.65850 4.72738 4.78628 4.80348 4.87518 4.89095 4.96623 5.01839 5.08435 5.15387 5.26329 5.34351 5.44934 5.57565 5.72513 5.75945 5.85625 6.03241 6.41379 6.74602 7.04143 7.21257 7.38871 7.98348 8.36804 9.20640 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.004384 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.279204 B = 6384.744072 C = 7628.100505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.380 5.380 3 N -0.333 5.333 4 C 0.046 3.954 5 C -0.277 4.277 6 C 0.084 3.916 7 C -0.036 4.036 8 C -0.103 4.103 9 C 0.527 3.473 10 O -0.583 6.583 11 N -0.640 5.640 12 C 0.111 3.889 13 C -0.106 4.106 14 H 0.127 0.873 15 C -0.103 4.103 16 C 0.139 3.861 17 N -0.601 5.601 18 C -0.257 4.257 19 H 0.060 0.940 20 C -0.042 4.042 21 N -0.933 5.933 22 Si 0.955 3.045 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.182 3.818 27 C 0.103 3.897 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.214 0.786 33 H 0.165 0.835 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.023 0.977 44 H 0.243 0.757 45 H -0.010 1.010 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.531 14.927 10.161 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.163 5.163 3 N -0.155 5.155 4 C -0.139 4.139 5 C -0.306 4.306 6 C -0.044 4.044 7 C -0.075 4.075 8 C -0.143 4.143 9 C 0.317 3.683 10 O -0.463 6.463 11 N -0.376 5.376 12 C -0.010 4.010 13 C -0.124 4.124 14 H 0.145 0.855 15 C -0.142 4.142 16 C 0.014 3.986 17 N -0.325 5.325 18 C -0.388 4.388 19 H 0.078 0.922 20 C -0.238 4.238 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.056 3.944 27 C -0.002 4.002 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.230 0.770 33 H 0.183 0.817 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.052 0.948 45 H 0.008 0.992 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.472 15.680 9.286 20.538 hybrid contribution -0.120 -1.143 -1.578 1.952 sum 9.352 14.537 7.708 18.926 Atomic orbital electron populations 1.22062 0.73427 1.05063 1.04506 1.48752 1.07334 1.03273 1.56943 1.77305 1.02922 1.08811 1.26446 1.24373 0.95483 0.95484 0.98560 1.21560 0.96442 0.95454 1.17152 1.21122 0.91941 0.89908 1.01382 1.19836 1.02534 0.88165 0.97012 1.21394 1.04755 0.90383 0.97806 1.20722 0.76979 0.89170 0.81394 1.90776 1.51490 1.71377 1.32627 1.49669 1.65757 1.15129 1.07011 1.23497 0.99728 1.00690 0.77058 1.22814 0.95353 0.98018 0.96263 0.85491 1.21619 0.93805 0.97591 1.01138 1.20874 0.96380 0.96096 0.85277 1.43682 1.10624 1.75735 1.02448 1.19354 1.11553 1.13772 0.94113 0.92190 1.25593 1.00705 0.95687 1.01797 1.70169 1.43876 1.16294 1.27616 0.85529 0.78738 0.76894 0.80454 1.21607 1.22206 1.19415 1.19768 0.83582 0.92360 0.98720 1.22642 0.97148 0.86091 0.94324 0.89474 0.89440 0.88318 0.89398 0.76992 0.81716 0.89141 0.91751 0.88268 0.86103 0.86831 0.88528 0.88342 0.93681 0.93166 0.95871 0.94753 0.99218 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.78 11.27 127.77 1.44 3.22 16 2 N -0.38 -9.44 4.01 -356.03 -1.43 -10.87 16 3 N -0.33 -8.56 12.58 -57.02 -0.72 -9.28 16 4 C 0.05 0.94 12.03 85.24 1.03 1.97 16 5 C -0.28 -5.86 10.72 21.99 0.24 -5.63 16 6 C 0.08 2.04 6.18 41.40 0.26 2.30 16 7 C -0.04 -0.95 4.79 29.85 0.14 -0.81 16 8 C -0.10 -2.55 5.54 29.85 0.17 -2.38 16 9 C 0.53 19.14 8.01 87.66 0.70 19.85 16 10 O -0.58 -28.71 15.22 -3.02 -0.05 -28.76 16 11 N -0.64 -20.74 3.33 -866.14 -2.89 -23.63 16 12 C 0.11 2.20 7.77 81.10 0.63 2.83 16 13 C -0.11 -2.64 4.57 -10.59 -0.05 -2.69 16 14 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 15 C -0.10 -2.91 5.68 30.52 0.17 -2.74 16 16 C 0.14 5.48 6.43 86.27 0.56 6.03 16 17 N -0.60 -30.92 3.03 -708.14 -2.15 -33.07 16 18 C -0.26 -14.98 9.53 84.03 0.80 -14.18 16 19 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 20 C -0.04 -2.56 4.96 84.86 0.42 -2.14 16 21 N -0.93 -59.36 10.93 21.65 0.24 -59.13 16 22 Si 0.95 49.15 29.58 68.60 2.03 51.18 16 23 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 24 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 25 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 26 C 0.18 9.26 4.59 85.91 0.39 9.65 16 27 C 0.10 3.69 4.03 38.69 0.16 3.85 16 28 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.77 6.97 -2.39 -0.02 1.76 16 32 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 35 H 0.06 1.97 6.90 -2.39 -0.02 1.95 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.49 8.04 -2.39 -0.02 1.47 16 40 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.42 7.68 -2.39 -0.02 1.41 16 42 H 0.05 1.98 7.87 -2.39 -0.02 1.96 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 45 H -0.01 -0.56 7.99 -2.39 -0.02 -0.58 16 46 H 0.05 3.21 4.96 -2.39 -0.01 3.20 16 Total: -1.00 -84.49 370.15 3.05 -81.44 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.97 Total: 12.99 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 7.05 Total: 19.13 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -6.95 Total: -135.97 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.03 Total: 51.18 kcal Total: -84.49 3.05 -81.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084382007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.679 kcal (2) G-P(sol) polarization free energy of solvation -84.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds