Wall clock time and date at job start Fri Apr 10 2020 18:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00169 * 2 1 4 4 C 1.52995 * 109.47306 * 274.65597 * 3 2 1 5 5 H 1.08993 * 112.96750 * 48.75456 * 4 3 2 6 6 C 1.53949 * 113.76996 * 180.44060 * 4 3 2 7 7 C 1.53941 * 86.29210 * 137.90564 * 6 4 3 8 8 N 1.47584 * 86.11943 * 336.39106 * 7 6 4 9 9 C 1.36934 * 134.49814 * 204.64112 * 8 7 6 10 10 H 1.07994 * 120.00348 * 187.59087 * 9 8 7 11 11 C 1.38817 * 119.99705 * 7.59299 * 9 8 7 12 12 N 1.31622 * 119.99953 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99999 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47073 * 59.99864 * 13 11 9 15 15 H 1.48497 * 109.47208 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47086 * 299.99784 * 13 11 9 17 17 C 1.34776 * 119.99766 * 179.72674 * 2 1 3 18 18 O 1.21627 * 120.00133 * 186.42414 * 17 2 1 19 19 C 1.47161 * 120.00050 * 6.41510 * 17 2 1 20 20 C 1.38407 * 126.88375 * 7.39692 * 19 17 2 21 21 C 1.39682 * 105.35720 * 179.97438 * 20 19 17 22 22 C 1.50700 * 126.06372 * 179.97438 * 21 20 19 23 23 C 1.52998 * 117.50291 * 343.74528 * 22 21 20 24 24 C 1.53000 * 117.49765 * 275.08413 * 22 21 20 25 25 N 1.30858 * 107.86108 * 0.02562 * 21 20 19 26 26 N 1.28443 * 110.93169 * 359.70903 * 25 21 20 27 27 C 1.46500 * 125.19507 * 180.27830 * 26 25 21 28 28 H 1.09006 * 109.47093 * 96.10686 * 1 2 3 29 29 H 1.08998 * 109.47343 * 216.11090 * 1 2 3 30 30 H 1.09004 * 109.47123 * 336.11069 * 1 2 3 31 31 H 1.08999 * 109.46842 * 34.65485 * 3 2 1 32 32 H 1.08999 * 109.47177 * 154.65029 * 3 2 1 33 33 H 1.08999 * 113.73882 * 252.25126 * 6 4 3 34 34 H 1.08993 * 113.74361 * 23.44957 * 6 4 3 35 35 H 1.09006 * 113.77403 * 90.69071 * 7 6 4 36 36 H 1.09002 * 113.76963 * 221.98026 * 7 6 4 37 37 H 0.96994 * 119.99571 * 179.97438 * 12 11 9 38 38 H 1.07996 * 127.32387 * 359.97438 * 20 19 17 39 39 H 1.09000 * 115.54841 * 129.41800 * 22 21 20 40 40 H 1.09002 * 117.49501 * 0.02562 * 23 22 21 41 41 H 1.08997 * 117.49619 * 145.01706 * 23 22 21 42 42 H 1.09001 * 117.49795 * 214.98046 * 24 22 21 43 43 H 1.08997 * 117.49810 * 0.02562 * 24 22 21 44 44 H 1.08999 * 109.47195 * 275.02907 * 27 26 25 45 45 H 1.08998 * 109.46677 * 35.02969 * 27 26 25 46 46 H 1.08997 * 109.46961 * 155.02775 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3511 1.7689 -1.4377 5 1 1.4151 1.7528 -1.9959 6 6 3.1200 3.0976 -1.5535 7 6 3.8295 2.4661 -2.7649 8 7 3.4876 1.1643 -2.1596 9 6 4.0133 -0.0978 -2.2367 10 1 3.4957 -0.9274 -1.7784 11 6 5.2118 -0.3107 -2.9040 12 7 5.8425 0.7004 -3.4630 13 14 5.9296 -2.0321 -3.0087 14 1 4.9689 -2.9277 -3.7019 15 1 7.2046 -1.9915 -3.7688 16 1 6.1854 -2.5459 -1.6390 17 6 2.1388 -1.1672 0.0056 18 8 3.3494 -1.1700 0.1234 19 6 1.4099 -2.4383 -0.1308 20 6 0.0644 -2.5982 -0.4134 21 6 -0.1467 -3.9787 -0.4391 22 6 -1.4584 -4.6708 -0.7067 23 6 -2.7340 -3.8330 -0.5993 24 6 -2.4063 -4.8703 0.4776 25 7 0.9964 -4.5643 -0.1886 26 7 1.9267 -3.6970 -0.0094 27 6 3.3275 -4.0097 0.2842 28 1 -0.3633 -0.1093 -1.0219 29 1 -0.3634 -0.8302 0.6056 30 1 -0.3633 0.9397 0.4162 31 1 1.6471 2.0060 0.5844 32 1 3.1834 1.1189 0.4400 33 1 2.4890 3.9488 -1.8092 34 1 3.7812 3.2970 -0.7103 35 1 3.3287 2.6540 -3.7147 36 1 4.9001 2.6679 -2.8014 37 1 6.6801 0.5516 -3.9289 38 1 -0.6668 -1.8208 -0.5788 39 1 -1.4315 -5.4514 -1.4670 40 1 -2.6245 -2.7810 -0.3355 41 1 -3.5465 -4.0626 -1.2887 42 1 -3.0034 -5.7821 0.4962 43 1 -2.0814 -4.5007 1.4501 44 1 3.4490 -4.1605 1.3569 45 1 3.6157 -4.9178 -0.2453 46 1 3.9600 -3.1835 -0.0405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085621164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:59 Heat of formation + Delta-G solvation = 136.630990 kcal Electronic energy + Delta-G solvation = -28132.370646 eV Core-core repulsion = 24448.242530 eV Total energy + Delta-G solvation = -3684.128116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.65702 -40.82784 -39.24688 -38.08242 -36.67963 -34.17411 -33.86612 -32.40649 -29.83717 -29.42351 -28.45924 -27.56640 -25.20905 -24.80193 -24.18336 -23.27897 -22.61675 -21.46292 -20.77509 -19.84958 -18.79046 -18.19025 -17.53078 -17.45830 -16.90057 -16.84750 -16.26348 -16.15411 -15.76799 -15.27608 -15.24191 -15.04455 -14.81553 -14.37861 -14.00412 -13.85976 -13.56097 -13.38215 -13.06803 -12.95863 -12.90152 -12.75741 -12.60648 -12.42408 -12.33165 -12.23540 -11.89222 -11.75490 -11.47959 -11.40983 -11.24363 -11.11532 -10.91883 -10.67326 -10.11636 -9.81783 -9.53670 -8.72472 -7.79140 -5.07810 0.25388 1.31118 1.32562 1.35474 1.40754 1.48745 2.09636 2.26073 2.49549 2.97463 3.30290 3.41449 3.44575 3.54706 3.88464 4.01918 4.03727 4.14747 4.15492 4.26473 4.31076 4.32863 4.37605 4.43243 4.47234 4.54297 4.57430 4.70828 4.76340 4.78913 4.89179 4.93226 4.96547 5.09633 5.10779 5.17663 5.26764 5.36943 5.44537 5.48428 5.60965 5.67998 5.74875 5.83577 6.09457 6.37407 7.01596 7.07185 7.20843 7.76154 8.67980 9.37290 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.005036 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.109485 B = 5559.181050 C = 6852.114037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.595 5.595 3 C 0.124 3.876 4 C 0.125 3.875 5 H 0.061 0.939 6 C -0.125 4.125 7 C 0.136 3.864 8 N -0.628 5.628 9 C -0.177 4.177 10 H 0.090 0.910 11 C -0.080 4.080 12 N -0.960 5.960 13 Si 0.944 3.056 14 H -0.292 1.292 15 H -0.295 1.295 16 H -0.279 1.279 17 C 0.569 3.431 18 O -0.544 6.544 19 C -0.048 4.048 20 C -0.189 4.189 21 C 0.047 3.953 22 C -0.098 4.098 23 C -0.147 4.147 24 C -0.160 4.160 25 N -0.300 5.300 26 N -0.272 5.272 27 C 0.078 3.922 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.015 0.985 36 H 0.042 0.958 37 H 0.238 0.762 38 H 0.205 0.795 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.658 -3.221 10.472 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.327 5.327 3 C 0.001 3.999 4 C 0.019 3.981 5 H 0.079 0.921 6 C -0.163 4.163 7 C 0.011 3.989 8 N -0.354 5.354 9 C -0.307 4.307 10 H 0.107 0.893 11 C -0.271 4.271 12 N -0.613 5.613 13 Si 0.776 3.224 14 H -0.219 1.219 15 H -0.221 1.221 16 H -0.205 1.205 17 C 0.356 3.644 18 O -0.423 6.423 19 C -0.176 4.176 20 C -0.217 4.217 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.184 4.184 24 C -0.198 4.198 25 N -0.133 5.133 26 N -0.059 5.059 27 C -0.062 4.062 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.221 0.779 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.107 -4.527 10.629 22.328 hybrid contribution 1.193 -0.455 -0.834 1.525 sum -17.914 -4.982 9.796 21.016 Atomic orbital electron populations 1.22664 0.77141 1.05771 1.02762 1.47434 1.08438 1.04573 1.72222 1.21891 0.97287 0.83761 0.96950 1.22943 0.91510 0.91191 0.92496 0.92134 1.23499 0.98646 0.95940 0.98256 1.22312 0.98540 0.84374 0.93657 1.46437 1.31581 1.05221 1.52171 1.19674 1.00969 0.85284 1.24739 0.89259 1.25316 0.98843 0.99484 1.03461 1.69973 1.17965 1.29904 1.43458 0.85614 0.77429 0.81964 0.77401 1.21929 1.22140 1.20543 1.17172 0.86106 0.83357 0.77744 1.90852 1.14785 1.87113 1.49502 1.21677 0.95234 0.87507 1.13203 1.23110 0.93929 0.97695 1.06983 1.21631 0.93391 0.91849 1.04049 1.20127 0.84752 1.03326 1.03573 1.23166 0.95915 0.97743 1.01607 1.23053 1.01126 1.02116 0.93490 1.73009 0.98083 1.21517 1.20708 1.45655 1.09346 1.02319 1.48560 1.22441 0.75102 1.04515 1.04107 0.91600 0.89120 0.87302 0.85854 0.92443 0.88651 0.90411 0.96693 0.94007 0.95264 0.77881 0.86537 0.87443 0.86133 0.86765 0.89366 0.87975 0.88008 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 8.71 127.77 1.11 2.17 16 2 N -0.59 -18.18 2.87 -850.99 -2.45 -20.63 16 3 C 0.12 3.94 5.40 86.38 0.47 4.40 16 4 C 0.13 4.61 4.54 45.09 0.20 4.82 16 5 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 6 C -0.12 -4.29 7.86 31.25 0.25 -4.05 16 7 C 0.14 6.58 7.72 86.48 0.67 7.24 16 8 N -0.63 -32.44 3.57 -694.07 -2.48 -34.92 16 9 C -0.18 -10.46 9.27 84.04 0.78 -9.68 16 10 H 0.09 5.25 4.13 -2.91 -0.01 5.24 16 11 C -0.08 -4.99 5.50 84.86 0.47 -4.53 16 12 N -0.96 -62.13 11.27 21.65 0.24 -61.88 16 13 Si 0.94 51.17 29.55 68.60 2.03 53.20 16 14 H -0.29 -15.57 7.11 99.48 0.71 -14.87 16 15 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 16 H -0.28 -14.71 7.11 99.48 0.71 -14.01 16 17 C 0.57 21.88 6.19 86.59 0.54 22.42 16 18 O -0.54 -25.76 11.06 -4.12 -0.05 -25.81 16 19 C -0.05 -1.67 6.77 40.79 0.28 -1.39 16 20 C -0.19 -5.12 8.15 22.66 0.18 -4.93 16 21 C 0.05 1.32 6.85 43.05 0.30 1.61 16 22 C -0.10 -1.93 6.33 -11.54 -0.07 -2.01 16 23 C -0.15 -1.84 10.03 30.62 0.31 -1.53 16 24 C -0.16 -2.32 10.24 30.62 0.31 -2.01 16 25 N -0.30 -10.01 11.90 -47.49 -0.57 -10.58 16 26 N -0.27 -9.63 3.75 -356.02 -1.33 -10.97 16 27 C 0.08 2.57 11.03 127.77 1.41 3.98 16 28 H 0.07 1.16 7.34 -2.38 -0.02 1.14 16 29 H 0.09 1.47 5.41 -2.39 -0.01 1.45 16 30 H 0.11 1.24 7.88 -2.39 -0.02 1.22 16 31 H 0.12 2.61 7.93 -2.39 -0.02 2.59 16 32 H 0.06 2.31 7.21 -2.39 -0.02 2.29 16 33 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 35 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.04 2.32 6.85 -2.39 -0.02 2.31 16 37 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.20 3.90 4.06 -2.91 -0.01 3.89 16 39 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.11 1.15 7.22 -2.39 -0.02 1.13 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.09 3.61 5.93 -2.39 -0.01 3.59 16 Total: -1.00 -83.92 363.50 3.59 -80.33 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.00 Total: 14.74 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 7.19 Total: 16.52 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -6.58 Total: -138.97 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.03 Total: 53.20 kcal Total: -83.92 3.59 -80.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085621164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.959 kcal (2) G-P(sol) polarization free energy of solvation -83.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds