Wall clock time and date at job start Fri Apr 10 2020 18:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46986 * 2 1 4 4 C 1.52998 * 109.47000 * 119.99824 * 2 1 3 5 5 H 1.09004 * 109.47126 * 60.00003 * 4 2 1 6 6 C 1.53000 * 109.47202 * 180.02562 * 4 2 1 7 7 N 1.46494 * 109.47060 * 175.00009 * 6 4 2 8 8 C 1.34776 * 120.00147 * 179.97438 * 7 6 4 9 9 O 1.21282 * 119.99936 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00422 * 179.97438 * 8 7 6 11 11 H 1.08998 * 109.29378 * 318.23002 * 10 8 7 12 12 C 1.54070 * 109.35262 * 77.90718 * 10 8 7 13 13 C 1.55608 * 104.29573 * 165.38195 * 12 10 8 14 14 S 1.83451 * 100.72313 * 322.08242 * 13 12 10 15 15 O 1.42108 * 111.24884 * 270.72534 * 14 13 12 16 16 O 1.42101 * 111.36214 * 131.50833 * 14 13 12 17 17 N 1.47064 * 109.35872 * 198.54442 * 10 8 7 18 18 N 1.46503 * 109.47037 * 300.00222 * 4 2 1 19 19 C 1.36937 * 120.00334 * 84.99846 * 18 4 2 20 20 H 1.08003 * 119.99679 * 0.02562 * 19 18 4 21 21 C 1.38811 * 120.00563 * 180.02562 * 19 18 4 22 22 N 1.31615 * 119.99974 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99682 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47008 * 90.00131 * 23 21 19 25 25 H 1.48497 * 109.47207 * 209.99944 * 23 21 19 26 26 H 1.48499 * 109.47171 * 330.00621 * 23 21 19 27 27 H 1.08994 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47300 * 300.00464 * 1 2 3 29 29 H 1.09012 * 109.46665 * 60.00260 * 1 2 3 30 30 H 1.08997 * 109.47061 * 240.00030 * 2 1 3 31 31 H 1.08998 * 109.46872 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46889 * 299.99951 * 3 2 1 33 33 H 1.08998 * 109.47037 * 59.99346 * 3 2 1 34 34 H 1.09000 * 109.47042 * 54.99847 * 6 4 2 35 35 H 1.09001 * 109.46864 * 295.00210 * 6 4 2 36 36 H 0.97004 * 120.00368 * 359.97438 * 7 6 4 37 37 H 1.09001 * 110.46961 * 46.67730 * 12 10 8 38 38 H 1.09002 * 110.57786 * 284.14115 * 12 10 8 39 39 H 1.08993 * 111.16813 * 204.21712 * 13 12 10 40 40 H 1.09004 * 111.20430 * 79.96453 * 13 12 10 41 41 H 0.96997 * 126.29755 * 31.05543 * 17 10 8 42 42 H 0.97003 * 120.00040 * 265.00327 * 18 4 2 43 43 H 0.97002 * 119.99699 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 3.5700 -0.7207 1.2496 7 7 4.0582 -1.3044 2.5014 8 6 5.3832 -1.4085 2.7248 9 8 6.1714 -1.0194 1.8891 10 6 5.8855 -2.0084 4.0127 11 1 5.2822 -1.6384 4.8417 12 6 5.7684 -3.5430 3.9410 13 6 6.6444 -4.0508 5.1226 14 16 8.0339 -2.8549 5.0559 15 8 9.0681 -3.3143 4.1963 16 8 8.3154 -2.3163 6.3404 17 7 7.2883 -1.6174 4.2182 18 7 1.5516 -0.0306 2.4454 19 6 0.3100 -0.3209 2.9448 20 1 -0.3090 -1.0594 2.4570 21 6 -0.1530 0.3338 4.0778 22 7 -1.3462 0.0543 4.5580 23 14 0.9179 1.6106 4.9218 24 1 0.6443 2.9491 4.3397 25 1 0.6121 1.6308 6.3748 26 1 2.3487 1.2670 4.7217 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.9330 0.3032 1.1602 35 1 3.9337 -1.3099 0.4078 36 1 3.4278 -1.6159 3.1697 37 1 6.1581 -3.9111 2.9919 38 1 4.7323 -3.8548 4.0731 39 1 6.9923 -5.0685 4.9456 40 1 6.1090 -3.9797 6.0694 41 1 7.7029 -0.7911 3.9248 42 1 2.1077 0.6325 2.8837 43 1 -1.6699 0.5121 5.3495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667520071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:59 Heat of formation + Delta-G solvation = -91.338179 kcal Electronic energy + Delta-G solvation = -25891.463437 eV Core-core repulsion = 22099.342031 eV Total energy + Delta-G solvation = -3792.121406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.12725 -37.81858 -37.28049 -36.58464 -36.08675 -34.19256 -33.00774 -32.05732 -30.79139 -28.94945 -26.86767 -26.45417 -23.78768 -22.97601 -22.01525 -20.50812 -19.84166 -19.06952 -18.35547 -17.62654 -17.53576 -16.58020 -16.06837 -15.82962 -15.46498 -15.05575 -14.90889 -14.41974 -14.36000 -13.88893 -13.72249 -13.43940 -13.39267 -13.09420 -12.74396 -12.54016 -12.38155 -12.24302 -12.20758 -12.11852 -11.85675 -11.46623 -11.31311 -11.14556 -10.97188 -10.91987 -10.68167 -10.42150 -10.20059 -10.18248 -10.02587 -9.60040 -9.54511 -9.04781 -8.93592 -7.43787 -5.90783 -3.27201 -0.06547 2.20898 2.51565 3.13965 3.24211 3.29424 3.29894 3.36877 3.62323 3.95614 4.11525 4.44262 4.45434 4.58518 4.85760 4.99052 5.07175 5.10112 5.15945 5.30839 5.33662 5.37839 5.54743 5.63409 5.65092 5.89989 5.94025 6.19319 6.23590 6.38910 6.48029 6.53929 6.60149 6.71186 6.82939 6.86309 7.28848 7.56860 7.84701 8.18396 8.27351 9.05065 9.77187 9.96264 11.26703 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.003779 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.671852 B = 7408.079857 C = 8408.639861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.173 3.827 5 H 0.063 0.937 6 C 0.107 3.893 7 N -0.710 5.710 8 C 0.511 3.489 9 O -0.533 6.533 10 C 0.093 3.907 11 H 0.110 0.890 12 C -0.118 4.118 13 C -0.595 4.595 14 S 2.579 3.421 15 O -0.956 6.956 16 O -0.956 6.956 17 N -1.082 6.082 18 N -0.744 5.744 19 C -0.243 4.243 20 H 0.095 0.905 21 C 0.010 3.990 22 N -0.929 5.929 23 Si 0.878 3.122 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.411 0.589 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.439 0.561 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.485 -7.449 -2.163 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.201 4.201 4 C 0.063 3.937 5 H 0.081 0.919 6 C -0.017 4.017 7 N -0.363 5.363 8 C 0.294 3.706 9 O -0.410 6.410 10 C -0.020 4.020 11 H 0.128 0.872 12 C -0.158 4.158 13 C -0.725 4.725 14 S 2.673 3.327 15 O -0.945 6.945 16 O -0.946 6.946 17 N -0.850 5.850 18 N -0.387 5.387 19 C -0.372 4.372 20 H 0.112 0.888 21 C -0.187 4.187 22 N -0.576 5.576 23 Si 0.708 3.292 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.248 0.752 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.280 0.720 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.741 -7.359 -2.327 15.760 hybrid contribution -0.288 1.142 0.682 1.361 sum 13.453 -6.217 -1.645 14.911 Atomic orbital electron populations 1.21841 0.94394 1.01306 1.02267 1.21595 0.97236 0.96261 0.97738 1.21816 0.99653 0.96976 1.01633 1.20529 0.88979 0.96402 0.87752 0.91878 1.21876 0.95805 0.98706 0.85333 1.46036 1.06383 1.62128 1.21729 1.20222 0.82947 0.79617 0.87863 1.90714 1.55427 1.48871 1.45951 1.21659 0.85738 0.95655 0.98933 0.87212 1.22638 1.04281 0.90771 0.98128 1.30844 1.18234 1.16185 1.07281 1.06125 0.75415 0.76595 0.74586 1.93635 1.53614 1.81150 1.66140 1.93642 1.83357 1.76311 1.41269 1.54949 1.17930 1.35734 1.76344 1.42813 1.18410 1.47917 1.29589 1.19030 0.91306 1.19480 1.07433 0.88753 1.24641 0.96327 0.99480 0.98222 1.69683 1.17608 1.45194 1.25140 0.86681 0.80204 0.82842 0.79428 1.21168 1.21843 1.20438 0.93819 0.89147 0.94962 0.92854 0.93600 0.93856 0.91887 0.91182 0.91291 0.75196 0.87982 0.85882 0.83577 0.83467 0.71981 0.80498 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.26 37.16 0.31 -2.06 16 2 C -0.11 -1.60 2.80 -90.62 -0.25 -1.86 16 3 C -0.14 -2.13 8.69 37.16 0.32 -1.80 16 4 C 0.17 2.70 2.35 -67.93 -0.16 2.54 16 5 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 6 C 0.11 1.49 5.02 -4.05 -0.02 1.47 16 7 N -0.71 -9.14 5.39 -60.30 -0.32 -9.46 16 8 C 0.51 6.61 7.06 -10.99 -0.08 6.53 16 9 O -0.53 -8.68 16.38 5.56 0.09 -8.59 16 10 C 0.09 0.89 3.41 -68.22 -0.23 0.66 16 11 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 12 C -0.12 -0.80 6.09 -24.78 -0.15 -0.95 16 13 C -0.59 -3.29 7.51 38.55 0.29 -3.01 16 14 S 2.58 25.08 6.50 -107.50 -0.70 24.38 16 15 O -0.96 -12.73 18.14 -57.43 -1.04 -13.77 16 16 O -0.96 -12.43 18.13 -57.43 -1.04 -13.47 16 17 N -1.08 -11.27 6.31 -5.08 -0.03 -11.30 16 18 N -0.74 -14.26 3.48 -53.42 -0.19 -14.44 16 19 C -0.24 -5.74 8.05 -15.06 -0.12 -5.87 16 20 H 0.09 2.43 7.63 -52.48 -0.40 2.03 16 21 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 22 N -0.93 -26.59 13.97 55.49 0.78 -25.82 16 23 Si 0.88 20.11 27.74 -169.99 -4.71 15.39 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -5.89 6.52 56.52 0.37 -5.52 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 29 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.63 6.32 -51.93 -0.33 0.30 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.07 7.60 -51.93 -0.39 0.67 16 34 H 0.07 1.04 6.17 -51.93 -0.32 0.72 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.41 5.06 8.14 -40.82 -0.33 4.73 16 37 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.15 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.15 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.44 4.65 8.73 -40.34 -0.35 4.29 16 42 H 0.36 7.14 5.66 -40.82 -0.23 6.91 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -34.71 355.52 -8.49 -43.20 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.48 Total: 12.71 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.19 Total: -4.19 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.23 Total: -61.02 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.99 Total: -35.84 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.71 Total: 15.39 kcal Atomic # 16 Polarization: 25.08 SS G_CDS: -0.70 Total: 24.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.71 -8.49 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667520071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.137 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds