Wall clock time and date at job start Fri Apr 10 2020 18:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47085 * 270.27634 * 3 2 1 5 5 H 1.48497 * 109.46789 * 30.27643 * 3 2 1 6 6 H 1.48490 * 109.47245 * 150.27793 * 3 2 1 7 7 C 1.38955 * 120.00245 * 180.27976 * 2 1 3 8 8 H 1.08000 * 119.99307 * 359.72011 * 7 2 1 9 9 N 1.37092 * 120.00110 * 179.72419 * 7 2 1 10 10 C 1.34774 * 119.99974 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99808 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00325 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.47477 * 110.99847 * 265.96835 * 13 12 10 15 15 C 1.53508 * 87.93161 * 221.29626 * 14 13 12 16 16 C 1.47482 * 111.00029 * 170.00013 * 13 12 10 17 17 H 1.09004 * 113.47237 * 23.93512 * 16 13 12 18 18 C 1.52999 * 113.47464 * 253.53246 * 16 13 12 19 19 N 1.46494 * 109.47441 * 54.99881 * 18 16 13 20 20 C 1.34780 * 120.00247 * 179.97438 * 19 18 16 21 21 O 1.21476 * 120.00023 * 0.02562 * 20 19 18 22 22 C 1.48451 * 120.00136 * 179.97438 * 20 19 18 23 23 C 1.39539 * 120.55056 * 180.02562 * 22 20 19 24 24 C 1.38763 * 118.26623 * 179.97438 * 23 22 20 25 25 N 1.32207 * 119.14553 * 359.97438 * 24 23 22 26 26 C 1.31882 * 121.03678 * 0.02562 * 25 24 23 27 27 N 1.31590 * 121.91614 * 359.73040 * 26 25 24 28 28 H 0.97000 * 120.00281 * 359.72537 * 1 2 3 29 29 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47128 * 300.00456 * 12 10 9 31 31 H 1.08999 * 109.47436 * 59.99595 * 12 10 9 32 32 H 1.09000 * 113.48077 * 336.06762 * 14 13 12 33 33 H 1.09007 * 113.47151 * 106.53102 * 14 13 12 34 34 H 1.09004 * 114.17313 * 272.37920 * 15 14 13 35 35 H 1.09000 * 114.17273 * 139.67591 * 15 14 13 36 36 H 1.08997 * 109.46820 * 174.99994 * 18 16 13 37 37 H 1.09008 * 109.47036 * 294.99678 * 18 16 13 38 38 H 0.97004 * 120.00341 * 0.02562 * 19 18 16 39 39 H 1.08002 * 120.86588 * 359.97438 * 23 22 20 40 40 H 1.07993 * 120.42549 * 179.97438 * 24 23 22 41 41 H 1.07995 * 119.04067 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4898 2.0498 -1.4001 5 1 1.4484 2.6509 0.7059 6 1 3.5485 1.4385 0.6941 7 6 2.0089 -1.2033 -0.0059 8 1 1.4688 -2.1386 -0.0059 9 7 3.3798 -1.2033 -0.0116 10 6 4.0537 -2.3704 -0.0168 11 8 3.4472 -3.4209 -0.0168 12 6 5.5607 -2.3705 -0.0236 13 7 6.0504 -3.7555 -0.0290 14 6 6.3240 -4.2245 1.3422 15 6 7.5950 -4.8933 0.8001 16 6 7.5038 -3.8012 -0.2748 17 1 8.0194 -2.8801 -0.0028 18 6 7.8697 -4.2921 -1.6770 19 7 7.1866 -3.4674 -2.6767 20 6 7.3613 -3.7172 -3.9896 21 8 8.0847 -4.6265 -4.3439 22 6 6.6686 -2.8820 -5.0027 23 6 6.8408 -3.1308 -6.3649 24 6 6.1703 -2.3211 -7.2707 25 7 5.3970 -1.3498 -6.8164 26 6 5.2563 -1.1418 -5.5217 27 7 5.8688 -1.8871 -4.6268 28 1 -0.4850 0.8400 0.0040 29 1 3.8648 -0.3632 -0.0119 30 1 5.9200 -1.8550 -0.9143 31 1 5.9281 -1.8582 0.8656 32 1 6.5247 -3.4165 2.0457 33 1 5.5848 -4.9341 1.7140 34 1 7.4413 -5.9045 0.4231 35 1 8.4612 -4.8031 1.4556 36 1 8.9477 -4.2163 -1.8186 37 1 7.5604 -5.3312 -1.7904 38 1 6.6092 -2.7411 -2.3939 39 1 7.4792 -3.9326 -6.7053 40 1 6.2788 -2.4825 -8.3330 41 1 4.6162 -0.3393 -5.1862 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670701842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:19 Heat of formation + Delta-G solvation = 33.651360 kcal Electronic energy + Delta-G solvation = -26490.478819 eV Core-core repulsion = 22600.626166 eV Total energy + Delta-G solvation = -3889.852653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39222 -40.55038 -39.22204 -37.94403 -34.84498 -34.01595 -33.91215 -32.31784 -31.72796 -30.93116 -28.75839 -25.99009 -25.64950 -24.58528 -23.60464 -23.11549 -21.15541 -19.92474 -19.39132 -18.62593 -18.37828 -17.84576 -16.29477 -16.18574 -15.94711 -15.69948 -15.62937 -15.50233 -15.06454 -14.84806 -14.59653 -14.29761 -13.91848 -13.80074 -13.64291 -13.28764 -12.87222 -12.62284 -12.23875 -12.08735 -11.67308 -11.47204 -11.20007 -11.19599 -11.06517 -10.99050 -10.77045 -10.60863 -10.45896 -10.00813 -9.97437 -9.56040 -9.54947 -9.19723 -8.95118 -8.35017 -8.17113 -6.30473 -3.81678 0.26961 0.68230 2.57729 2.79003 3.00936 3.05517 3.14077 3.62326 3.67024 3.71963 3.84955 3.90247 4.09857 4.24995 4.38606 4.59835 4.62591 4.74990 4.75532 4.85819 5.10709 5.17976 5.25113 5.28639 5.29952 5.35691 5.47327 5.54036 5.64828 5.73460 5.82946 5.93419 6.01133 6.07033 6.19447 6.40014 6.56383 7.01668 7.29466 7.58265 7.72686 7.94972 8.14763 8.60915 8.96328 9.42993 9.84737 10.82821 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.008789 B = 0.004863 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.030268 B = 5756.834573 C = 8357.175240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.302 4.302 8 H 0.119 0.881 9 N -0.592 5.592 10 C 0.456 3.544 11 O -0.554 6.554 12 C 0.003 3.997 13 N -0.433 5.433 14 C 0.004 3.996 15 C -0.132 4.132 16 C 0.002 3.998 17 H 0.084 0.916 18 C 0.138 3.862 19 N -0.695 5.695 20 C 0.570 3.430 21 O -0.532 6.532 22 C 0.132 3.868 23 C -0.173 4.173 24 C 0.148 3.852 25 N -0.506 5.506 26 C 0.300 3.700 27 N -0.492 5.492 28 H 0.273 0.727 29 H 0.369 0.631 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.413 0.587 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.493 -2.264 -6.692 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.431 4.431 8 H 0.136 0.864 9 N -0.232 5.232 10 C 0.241 3.759 11 O -0.435 6.435 12 C -0.129 4.129 13 N -0.155 5.155 14 C -0.125 4.125 15 C -0.170 4.170 16 C -0.108 4.108 17 H 0.102 0.898 18 C 0.014 3.986 19 N -0.347 5.347 20 C 0.353 3.647 21 O -0.408 6.408 22 C -0.017 4.017 23 C -0.195 4.195 24 C -0.019 4.019 25 N -0.220 5.220 26 C 0.012 3.988 27 N -0.208 5.208 28 H 0.083 0.917 29 H 0.202 0.798 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.251 0.749 39 H 0.178 0.822 40 H 0.193 0.807 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 18.310 -3.136 -7.011 19.856 hybrid contribution 1.117 1.853 0.359 2.193 sum 19.427 -1.283 -6.652 20.575 Atomic orbital electron populations 1.69618 1.05631 1.27426 1.49568 1.25019 0.95452 0.97874 0.97765 0.86691 0.79706 0.84172 0.78918 1.19541 1.20256 1.19632 1.19407 0.79203 0.96569 1.47926 0.86373 1.42196 1.07496 1.06023 1.67516 1.19465 0.87654 0.84613 0.84126 1.90579 1.69117 1.30888 1.52871 1.22623 0.97086 0.91451 1.01747 1.68871 1.10924 1.18231 1.17492 1.23775 0.97227 0.99969 0.91527 1.23155 0.98240 0.98758 0.96831 1.23802 0.92233 0.99676 0.95069 0.89816 1.21447 0.96460 0.95647 0.85016 1.45801 1.48432 1.35583 1.04867 1.17784 0.81167 0.83290 0.82459 1.90778 1.38471 1.30782 1.80729 1.21650 0.93650 0.93074 0.93286 1.22968 1.01232 1.01796 0.93553 1.23372 0.88949 0.88492 1.01115 1.68404 1.16654 1.18999 1.17992 1.25123 0.93663 0.95953 0.84012 1.68398 1.06891 1.04963 1.40534 0.91651 0.79849 0.89849 0.91902 0.91295 0.88965 0.88410 0.90293 0.90777 0.90227 0.74877 0.82234 0.80659 0.77783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.10 27.74 -169.99 -4.71 14.38 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 10 C 0.46 10.24 7.85 -10.99 -0.09 10.16 16 11 O -0.55 -14.98 16.01 5.54 0.09 -14.89 16 12 C 0.00 0.05 5.05 -4.97 -0.03 0.03 16 13 N -0.43 -6.43 5.39 -237.97 -1.28 -7.72 16 14 C 0.00 0.05 7.71 -7.56 -0.06 -0.01 16 15 C -0.13 -1.23 8.00 -26.21 -0.21 -1.44 16 16 C 0.00 0.03 3.23 -71.44 -0.23 -0.20 16 17 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16 18 C 0.14 1.57 5.82 -4.05 -0.02 1.55 16 19 N -0.70 -9.20 5.46 -61.06 -0.33 -9.54 16 20 C 0.57 8.05 7.83 -12.05 -0.09 7.96 16 21 O -0.53 -8.32 16.43 5.39 0.09 -8.23 16 22 C 0.13 1.73 6.79 -82.64 -0.56 1.17 16 23 C -0.17 -1.81 9.72 -38.90 -0.38 -2.19 16 24 C 0.15 1.39 11.31 -17.20 -0.19 1.19 16 25 N -0.51 -5.89 10.42 -14.60 -0.15 -6.04 16 26 C 0.30 3.69 12.28 -92.25 -1.13 2.56 16 27 N -0.49 -6.71 9.70 -11.14 -0.11 -6.82 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 30 H 0.08 1.17 6.26 -51.93 -0.32 0.84 16 31 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 32 H 0.07 0.77 7.42 -51.93 -0.39 0.39 16 33 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 34 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.99 7.88 -51.92 -0.41 0.58 16 38 H 0.41 5.68 5.60 -40.82 -0.23 5.45 16 39 H 0.16 1.40 7.74 -52.49 -0.41 1.00 16 40 H 0.18 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.21 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -35.84 352.21 -8.49 -44.33 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -4.86 Total: 14.89 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: -3.24 Total: 13.16 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.16 Total: -68.95 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.18 Total: -23.12 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.84 -8.49 -44.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670701842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.985 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds