Wall clock time and date at job start Fri Apr 10 2020 18:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 110.64069 * 2 1 4 4 C 1.34784 * 119.99971 * 59.29487 * 3 2 1 5 5 O 1.21274 * 119.99897 * 359.72827 * 4 3 2 6 6 C 1.50695 * 119.99635 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47004 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47542 * 179.97438 * 7 6 4 9 9 S 1.81394 * 109.47389 * 179.97438 * 8 7 6 10 10 N 1.65600 * 104.45154 * 179.97438 * 9 8 7 11 11 O 1.42095 * 110.54774 * 291.62803 * 9 8 7 12 12 O 1.42107 * 110.54270 * 68.37820 * 9 8 7 13 13 C 1.55157 * 110.72135 * 236.85466 * 2 1 3 14 14 C 1.54907 * 101.57838 * 205.95978 * 13 2 1 15 15 N 1.47420 * 104.83704 * 37.01218 * 14 13 2 16 16 C 1.36932 * 125.65284 * 155.91315 * 15 14 13 17 17 H 1.08003 * 120.00296 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00154 * 359.97438 * 16 15 14 19 19 N 1.31621 * 119.99850 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00272 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47279 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47141 * 119.99851 * 20 18 16 23 23 H 1.48500 * 109.47222 * 239.99627 * 20 18 16 24 24 C 1.47489 * 108.75437 * 335.89068 * 15 14 13 25 25 H 1.09001 * 109.46995 * 60.70381 * 1 2 3 26 26 H 1.09005 * 109.47358 * 180.69760 * 1 2 3 27 27 H 1.08996 * 109.47556 * 300.70466 * 1 2 3 28 28 H 0.96999 * 119.99984 * 239.29334 * 3 2 1 29 29 H 1.09005 * 109.47403 * 300.00056 * 6 4 3 30 30 H 1.09002 * 109.47422 * 60.00295 * 6 4 3 31 31 H 1.08997 * 109.47244 * 300.00535 * 7 6 4 32 32 H 1.09002 * 109.46787 * 59.99910 * 7 6 4 33 33 H 1.08997 * 109.47365 * 300.00556 * 8 7 6 34 34 H 1.09004 * 109.46747 * 59.99765 * 8 7 6 35 35 H 0.96998 * 120.00141 * 149.99930 * 10 9 8 36 36 H 0.97006 * 120.00249 * 330.00682 * 10 9 8 37 37 H 1.09000 * 111.00440 * 324.03238 * 13 2 1 38 38 H 1.08993 * 111.00332 * 87.88902 * 13 2 1 39 39 H 1.09005 * 110.36550 * 155.85205 * 14 13 2 40 40 H 1.09001 * 110.37109 * 278.17445 * 14 13 2 41 41 H 0.96990 * 120.00167 * 180.02562 * 19 18 16 42 42 H 1.09006 * 110.03150 * 241.65801 * 24 15 14 43 43 H 1.09006 * 109.96058 * 120.35463 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7262 2.2117 1.0036 5 8 1.0066 1.8348 1.9041 6 6 2.2579 3.6217 1.0038 7 6 1.7478 4.3589 2.2437 8 6 2.2881 5.7903 2.2444 9 16 1.6827 6.6645 3.7140 10 7 2.3353 8.1815 3.5905 11 8 0.2806 6.8773 3.6254 12 8 2.2690 6.1262 4.8912 13 6 2.0790 -0.7935 -1.2151 14 6 3.4652 -1.2447 -0.6911 15 7 3.2494 -1.5470 0.7355 16 6 4.0124 -2.3917 1.4967 17 1 3.7712 -2.5467 2.5380 18 6 5.0959 -3.0488 0.9300 19 7 5.3896 -2.8603 -0.3391 20 14 6.1364 -4.2016 1.9682 21 1 5.6009 -4.2402 3.3527 22 1 6.0969 -5.5660 1.3834 23 1 7.5390 -3.7146 1.9939 24 6 2.0759 -0.7891 1.2086 25 1 -0.3633 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0125 27 1 -0.3634 0.5247 0.8835 28 1 2.6188 1.6736 -0.7223 29 1 3.3477 3.5992 1.0168 30 1 1.9158 4.1393 0.1076 31 1 0.6582 4.3815 2.2304 32 1 2.0895 3.8416 3.1402 33 1 3.3778 5.7674 2.2580 34 1 1.9468 6.3079 1.3478 35 1 1.8643 8.9438 3.9620 36 1 3.1885 8.3079 3.1466 37 1 1.4469 -1.6530 -1.4382 38 1 2.1821 -0.1491 -2.0881 39 1 3.7993 -2.1365 -1.2216 40 1 4.1930 -0.4410 -0.8026 41 1 6.1464 -3.3197 -0.7352 42 1 2.3710 -0.0991 1.9992 43 1 1.3139 -1.4754 1.5782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671666692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:33 Heat of formation + Delta-G solvation = -90.500662 kcal Electronic energy + Delta-G solvation = -25254.379023 eV Core-core repulsion = 21462.293935 eV Total energy + Delta-G solvation = -3792.085088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98730 -37.50655 -37.28785 -36.19654 -34.87207 -33.98702 -33.56624 -31.95538 -30.16710 -28.76538 -28.28981 -25.67952 -23.81457 -22.88985 -20.63115 -20.21631 -19.74563 -19.01853 -18.06394 -17.60567 -17.14686 -16.68427 -16.47928 -15.84594 -15.56798 -15.36636 -14.69485 -14.35725 -13.91102 -13.72450 -13.45165 -12.91590 -12.80940 -12.62398 -12.46211 -12.35439 -12.23213 -12.21577 -12.15504 -11.90348 -11.73118 -11.56748 -11.19750 -11.10258 -10.93192 -10.87451 -10.72789 -10.41354 -10.35920 -10.05698 -9.95124 -9.66397 -9.26500 -8.67315 -8.63003 -6.81956 -5.65780 -3.05921 -0.08691 2.54394 2.86880 3.27683 3.40074 3.46248 3.47782 3.48994 3.93533 4.18949 4.49777 4.53588 4.61853 4.97289 4.99160 5.13082 5.20955 5.37280 5.40389 5.49903 5.56521 5.57068 5.66411 5.73294 5.81899 6.03694 6.16044 6.21759 6.35465 6.44388 6.51155 6.63414 6.69768 6.82561 7.13259 7.43126 7.63337 7.78520 7.85306 8.34278 8.50410 9.22946 9.83193 10.48124 11.38689 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.002767 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.006196 B =10117.288380 C =11037.974022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 N -0.708 5.708 4 C 0.511 3.489 5 O -0.537 6.537 6 C -0.133 4.133 7 C -0.097 4.097 8 C -0.623 4.623 9 S 2.616 3.384 10 N -1.253 6.253 11 O -0.962 6.962 12 O -0.957 6.957 13 C -0.146 4.146 14 C 0.154 3.846 15 N -0.605 5.605 16 C -0.216 4.216 17 H 0.077 0.923 18 C -0.014 4.014 19 N -0.925 5.925 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.136 3.864 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.397 0.603 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.419 0.581 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.009 0.991 41 H 0.250 0.750 42 H 0.033 0.967 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 21.599 -2.033 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.072 3.928 3 N -0.359 5.359 4 C 0.297 3.703 5 O -0.415 6.415 6 C -0.174 4.174 7 C -0.137 4.137 8 C -0.753 4.753 9 S 2.707 3.293 10 N -0.925 5.925 11 O -0.952 6.952 12 O -0.946 6.946 13 C -0.185 4.185 14 C 0.029 3.971 15 N -0.331 5.331 16 C -0.344 4.344 17 H 0.095 0.905 18 C -0.209 4.209 19 N -0.575 5.575 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.010 3.990 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.231 0.769 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.249 0.751 36 H 0.238 0.762 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.771 20.684 -0.641 21.773 hybrid contribution 1.619 0.065 -0.617 1.734 sum -5.152 20.749 -1.258 21.416 Atomic orbital electron populations 1.22052 0.94262 1.02288 1.02299 1.21355 0.93008 0.80485 0.97939 1.46005 1.51772 1.12504 1.25592 1.20436 0.80861 0.87066 0.81949 1.90680 1.37299 1.77706 1.35794 1.21603 1.02927 0.93411 0.99495 1.21044 1.02299 0.89882 1.00435 1.30499 1.12991 1.09997 1.21810 1.04735 0.74359 0.73749 0.76450 1.53277 1.35249 1.27667 1.76336 1.93612 1.30387 1.84021 1.87154 1.93645 1.78611 1.78768 1.43626 1.23353 1.01271 0.98857 0.95057 1.21922 0.89321 1.00574 0.85324 1.44633 1.30586 1.50535 1.07375 1.19158 1.05819 1.16453 0.92991 0.90485 1.24763 0.98833 1.00823 0.96480 1.69783 1.30165 1.46678 1.10866 0.85990 0.79990 0.80350 0.79175 1.20513 1.21769 1.21839 1.21695 0.90227 0.93179 0.93926 0.93250 0.91826 0.90751 0.76862 0.88428 0.88712 0.89271 0.89110 0.84647 0.84546 0.75134 0.76182 0.90571 0.91954 0.87467 0.97262 0.93887 0.94866 0.95127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.41 37.16 0.31 -2.04 16 2 C 0.16 2.77 0.81 -129.99 -0.10 2.66 16 3 N -0.71 -10.48 5.15 -45.92 -0.24 -10.71 16 4 C 0.51 7.50 7.04 -10.98 -0.08 7.42 16 5 O -0.54 -9.81 12.93 5.56 0.07 -9.74 16 6 C -0.13 -1.28 5.70 -27.88 -0.16 -1.44 16 7 C -0.10 -0.94 4.51 -26.73 -0.12 -1.06 16 8 C -0.62 -3.44 6.17 37.16 0.23 -3.21 16 9 S 2.62 20.64 5.97 -107.50 -0.64 19.99 16 10 N -1.25 -5.07 9.36 60.35 0.57 -4.50 16 11 O -0.96 -11.31 18.10 -57.54 -1.04 -12.35 16 12 O -0.96 -12.00 18.10 -57.54 -1.04 -13.04 16 13 C -0.15 -2.60 6.08 -24.58 -0.15 -2.75 16 14 C 0.15 3.58 5.87 -2.53 -0.01 3.57 16 15 N -0.61 -15.60 3.41 -169.70 -0.58 -16.18 16 16 C -0.22 -6.12 10.28 -15.06 -0.15 -6.27 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 19 N -0.93 -26.69 10.09 55.49 0.56 -26.13 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.14 3.03 6.20 -2.81 -0.02 3.01 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 27 H 0.07 1.26 6.19 -51.93 -0.32 0.93 16 28 H 0.40 4.88 8.48 -40.82 -0.35 4.53 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.14 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.42 1.39 8.96 -34.47 -0.31 1.08 16 36 H 0.41 0.48 8.96 -34.48 -0.31 0.17 16 37 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 38 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 39 H 0.11 2.84 5.87 -51.93 -0.31 2.54 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.03 0.80 6.69 -51.93 -0.35 0.45 16 43 H 0.03 0.70 7.80 -51.93 -0.41 0.29 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -39.35 358.90 -8.83 -48.18 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.52 Total: 2.40 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.35 Total: -0.60 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.31 Total: -57.53 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -2.01 Total: -35.14 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 20.64 SS G_CDS: -0.64 Total: 19.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.35 -8.83 -48.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671666692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.316 kcal (2) G-P(sol) polarization free energy of solvation -39.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds