Wall clock time and date at job start Fri Apr 10 2020 18:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47095 * 2 1 4 4 N 1.46496 * 109.47117 * 239.99854 * 2 1 3 5 5 S 1.65599 * 120.00025 * 171.59917 * 4 2 1 6 6 C 1.81400 * 104.44997 * 64.09428 * 5 4 2 7 7 O 1.42103 * 104.27552 * 180.16322 * 5 4 2 8 8 O 1.42092 * 104.27979 * 308.01966 * 5 4 2 9 9 C 1.50705 * 109.47007 * 119.99890 * 2 1 3 10 10 O 1.21277 * 119.99796 * 261.16809 * 9 2 1 11 11 N 1.34775 * 120.00015 * 81.16920 * 9 2 1 12 12 C 1.47021 * 125.64454 * 354.59706 * 11 9 2 13 13 C 1.54334 * 107.26880 * 178.89389 * 12 11 9 14 14 C 1.55158 * 102.94092 * 337.80496 * 13 12 11 15 15 H 1.09000 * 111.00407 * 277.39413 * 14 13 12 16 16 N 1.46500 * 111.00079 * 153.57522 * 14 13 12 17 17 C 1.36929 * 120.00044 * 86.45537 * 16 14 13 18 18 H 1.08010 * 120.00149 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00338 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99695 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00403 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47424 * 270.00337 * 21 19 17 23 23 H 1.48505 * 109.47157 * 30.00027 * 21 19 17 24 24 H 1.48504 * 109.47581 * 149.99923 * 21 19 17 25 25 C 1.47424 * 125.64964 * 174.54130 * 11 9 2 26 26 H 1.09003 * 109.47166 * 300.00044 * 1 2 3 27 27 H 1.08999 * 109.47020 * 60.00102 * 1 2 3 28 28 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47002 * 171.74284 * 3 2 1 30 30 H 1.08998 * 109.47369 * 291.73894 * 3 2 1 31 31 H 1.09004 * 109.47527 * 51.74292 * 3 2 1 32 32 H 0.97001 * 120.00036 * 351.59693 * 4 2 1 33 33 H 1.09004 * 109.46976 * 57.63750 * 6 5 4 34 34 H 1.09004 * 109.47464 * 177.63661 * 6 5 4 35 35 H 1.08996 * 109.46974 * 297.64127 * 6 5 4 36 36 H 1.08997 * 109.88728 * 59.47870 * 12 11 9 37 37 H 1.09002 * 109.88290 * 298.30639 * 12 11 9 38 38 H 1.08999 * 110.72021 * 219.43992 * 13 12 11 39 39 H 1.08998 * 110.71530 * 96.17047 * 13 12 11 40 40 H 0.97001 * 119.99706 * 266.45280 * 16 14 13 41 41 H 0.97002 * 119.99985 * 359.97438 * 20 19 17 42 42 H 1.08996 * 110.36431 * 85.33421 * 25 11 9 43 43 H 1.09003 * 110.36360 * 323.01363 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 3.6319 -0.6630 -1.5674 6 6 4.4270 -1.5456 -0.1964 7 8 3.7281 -1.4168 -2.7682 8 8 3.9747 0.7156 -1.5385 9 6 2.0323 -0.7104 1.2305 10 8 2.3865 -0.0705 2.1980 11 7 2.0880 -2.0568 1.2558 12 6 1.5892 -2.9548 0.2041 13 6 1.8926 -4.3998 0.6535 14 6 3.0510 -4.2119 1.6685 15 1 4.0094 -4.1272 1.1562 16 7 3.0754 -5.3036 2.6452 17 6 3.7489 -6.4614 2.3612 18 1 4.2619 -6.5701 1.4169 19 6 3.7726 -7.4956 3.2868 20 7 3.1471 -7.3634 4.4374 21 14 4.6907 -9.0754 2.8991 22 1 3.7724 -10.0297 2.2275 23 1 5.8353 -8.7753 2.0018 24 1 5.1947 -9.6773 4.1597 25 6 2.6602 -2.8728 2.3421 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1200 1.4460 0.1476 30 1 1.8023 1.9119 -0.9545 31 1 1.5612 1.9972 0.8070 32 1 1.3965 -1.1641 -1.7706 33 1 4.0083 -2.5490 -0.1188 34 1 5.4993 -1.6125 -0.3805 35 1 4.2511 -1.0056 0.7339 36 1 2.0992 -2.7442 -0.7359 37 1 0.5140 -2.8224 0.0827 38 1 2.2154 -5.0069 -0.1922 39 1 1.0230 -4.8433 1.1384 40 1 2.6145 -5.2061 3.4931 41 1 2.6699 -6.5431 4.6386 42 1 1.9168 -3.0426 3.1209 43 1 3.5422 -2.3858 2.7581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690248888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:40 Heat of formation + Delta-G solvation = -67.517701 kcal Electronic energy + Delta-G solvation = -27214.748827 eV Core-core repulsion = 23423.660354 eV Total energy + Delta-G solvation = -3791.088472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84257 -38.04843 -37.28895 -36.60810 -36.14063 -34.56016 -31.68487 -31.01003 -29.71943 -29.60272 -28.08851 -27.46078 -24.52017 -23.33872 -22.00463 -20.49240 -20.06300 -19.37759 -18.04251 -17.66804 -17.49811 -16.58685 -16.18875 -16.09135 -15.58991 -15.08474 -14.85676 -14.37640 -13.81782 -13.74558 -13.64501 -13.30742 -13.15227 -13.11932 -12.88748 -12.83540 -12.66157 -12.40023 -12.33984 -12.06412 -12.04962 -11.97222 -11.90407 -11.30664 -11.16930 -11.04575 -10.81825 -10.79142 -10.71791 -10.37286 -10.10435 -9.50534 -9.32655 -9.07155 -8.71928 -7.24263 -6.25103 -3.28401 0.01673 2.08175 2.54470 2.75575 3.44489 3.48263 3.50145 3.62545 3.95018 4.11995 4.35252 4.53456 4.54854 4.62045 4.74597 4.76058 4.92556 5.00818 5.03874 5.23702 5.29364 5.32580 5.41507 5.54889 5.59088 5.64385 5.65781 5.71885 5.79337 5.82665 5.94178 6.09505 6.15730 6.25921 6.35844 6.54561 6.64221 7.34909 7.65137 7.89878 8.59880 9.02508 9.89303 10.01628 11.22545 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.003914 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.909003 B = 7151.714632 C = 7781.254043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.166 3.834 3 C -0.157 4.157 4 N -1.109 6.109 5 S 2.606 3.394 6 C -0.679 4.679 7 O -0.956 6.956 8 O -0.950 6.950 9 C 0.504 3.496 10 O -0.526 6.526 11 N -0.608 5.608 12 C 0.093 3.907 13 C -0.160 4.160 14 C 0.175 3.825 15 H 0.065 0.935 16 N -0.725 5.725 17 C -0.340 4.340 18 H 0.067 0.933 19 C -0.039 4.039 20 N -0.939 5.939 21 Si 1.083 2.917 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.094 3.906 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.422 0.578 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.370 0.630 41 H 0.256 0.744 42 H 0.071 0.929 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 14.797 -11.903 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.074 3.926 3 C -0.215 4.215 4 N -0.870 5.870 5 S 2.699 3.301 6 C -0.829 4.829 7 O -0.947 6.947 8 O -0.940 6.940 9 C 0.290 3.710 10 O -0.401 6.401 11 N -0.342 5.342 12 C -0.030 4.030 13 C -0.201 4.201 14 C 0.063 3.937 15 H 0.083 0.917 16 N -0.366 5.366 17 C -0.470 4.470 18 H 0.085 0.915 19 C -0.237 4.237 20 N -0.583 5.583 21 Si 0.913 3.087 22 H -0.222 1.222 23 H -0.220 1.220 24 H -0.213 1.213 25 C -0.029 4.029 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.258 0.742 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.204 0.796 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.857 14.151 -11.605 18.703 hybrid contribution -0.989 0.785 0.009 1.263 sum -4.846 14.936 -11.597 19.521 Atomic orbital electron populations 1.22021 0.90526 1.03707 1.04242 1.20443 0.97859 0.93001 0.81341 1.22363 1.03916 0.91694 1.03546 1.55901 1.27408 1.67979 1.35694 1.04995 0.73766 0.75544 0.75836 1.30839 1.14713 1.16511 1.20825 1.93629 1.85116 1.73741 1.42176 1.93629 1.82806 1.30750 1.86824 1.20820 0.79159 0.81175 0.89845 1.90756 1.48159 1.65111 1.36112 1.48579 1.59178 1.04657 1.21809 1.22425 0.99193 0.90951 0.90424 1.23509 1.02168 0.92830 1.01612 1.21287 0.95684 0.86333 0.90437 0.91705 1.42247 1.63364 1.13834 1.17180 1.20022 1.29605 0.93799 1.03585 0.91457 1.25816 1.01443 1.02344 0.94080 1.70869 1.35473 1.28806 1.23138 0.83197 0.75321 0.74929 0.75238 1.22159 1.22030 1.21293 1.22638 0.98616 0.91826 0.89837 0.90219 0.90152 0.91135 0.89676 0.90328 0.90509 0.74180 0.84202 0.84889 0.85245 0.92169 0.91083 0.90256 0.90282 0.79612 0.93256 0.91076 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.54 37.16 0.32 -0.72 16 2 C 0.17 1.60 0.77 -132.97 -0.10 1.50 16 3 C -0.16 -1.62 6.62 37.15 0.25 -1.37 16 4 N -1.11 -9.56 3.07 -0.40 0.00 -9.56 16 5 S 2.61 28.14 5.57 -107.50 -0.60 27.54 16 6 C -0.68 -7.27 8.72 101.05 0.88 -6.39 16 7 O -0.96 -12.72 18.08 -57.54 -1.04 -13.76 16 8 O -0.95 -12.37 14.52 -57.54 -0.84 -13.21 16 9 C 0.50 6.44 4.06 -10.98 -0.04 6.39 16 10 O -0.53 -8.47 16.41 5.56 0.09 -8.38 16 11 N -0.61 -7.66 1.73 -170.51 -0.30 -7.96 16 12 C 0.09 1.02 4.73 -3.06 -0.01 1.00 16 13 C -0.16 -2.31 6.65 -24.89 -0.17 -2.47 16 14 C 0.17 3.03 3.15 -65.78 -0.21 2.83 16 15 H 0.07 1.14 7.04 -51.93 -0.37 0.78 16 16 N -0.72 -16.48 5.28 -51.35 -0.27 -16.75 16 17 C -0.34 -8.85 9.98 -15.06 -0.15 -9.01 16 18 H 0.07 1.73 7.83 -52.48 -0.41 1.31 16 19 C -0.04 -1.06 5.50 -17.43 -0.10 -1.15 16 20 N -0.94 -27.71 13.70 55.49 0.76 -26.95 16 21 Si 1.08 24.76 29.92 -169.99 -5.09 19.68 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.09 1.45 6.36 -2.53 -0.02 1.43 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.46 6.54 -51.93 -0.34 0.12 16 29 H 0.08 1.03 6.16 -51.93 -0.32 0.71 16 30 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.42 2.62 7.99 -34.47 -0.28 2.35 16 33 H 0.14 1.56 4.01 -51.92 -0.21 1.35 16 34 H 0.13 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.13 1.53 5.98 -51.93 -0.31 1.21 16 36 H 0.06 0.55 4.56 -51.93 -0.24 0.31 16 37 H 0.07 0.63 6.71 -51.93 -0.35 0.28 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.37 8.77 6.54 -40.82 -0.27 8.50 16 41 H 0.26 7.41 6.77 -40.82 -0.28 7.14 16 42 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 43 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -34.40 337.81 -7.48 -41.88 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.94 Total: 10.34 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.65 Total: -7.97 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.19 Total: -61.21 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.78 Total: -35.35 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.09 Total: 19.68 kcal Atomic # 16 Polarization: 28.14 SS G_CDS: -0.60 Total: 27.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.40 -7.48 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690248888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.638 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds