Wall clock time and date at job start Fri Apr 10 2020 18:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47095 * 2 1 4 4 N 1.46496 * 109.47117 * 239.99854 * 2 1 3 5 5 S 1.65599 * 120.00025 * 171.59917 * 4 2 1 6 6 C 1.81400 * 104.44997 * 64.09428 * 5 4 2 7 7 O 1.42103 * 104.27552 * 180.16322 * 5 4 2 8 8 O 1.42092 * 104.27979 * 308.01966 * 5 4 2 9 9 C 1.50705 * 109.47007 * 119.99890 * 2 1 3 10 10 O 1.21277 * 119.99796 * 261.16809 * 9 2 1 11 11 N 1.34775 * 120.00015 * 81.16920 * 9 2 1 12 12 C 1.47021 * 125.64454 * 354.59706 * 11 9 2 13 13 C 1.54334 * 107.26880 * 178.89389 * 12 11 9 14 14 C 1.55158 * 102.94092 * 337.80496 * 13 12 11 15 15 H 1.09000 * 111.00407 * 277.39413 * 14 13 12 16 16 N 1.46500 * 111.00079 * 153.57522 * 14 13 12 17 17 C 1.36929 * 120.00044 * 86.45537 * 16 14 13 18 18 H 1.08010 * 120.00149 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00338 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99695 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00403 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47424 * 270.00337 * 21 19 17 23 23 H 1.48505 * 109.47157 * 30.00027 * 21 19 17 24 24 H 1.48504 * 109.47581 * 149.99923 * 21 19 17 25 25 C 1.47424 * 125.64964 * 174.54130 * 11 9 2 26 26 H 1.09003 * 109.47166 * 300.00044 * 1 2 3 27 27 H 1.08999 * 109.47020 * 60.00102 * 1 2 3 28 28 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47002 * 171.74284 * 3 2 1 30 30 H 1.08998 * 109.47369 * 291.73894 * 3 2 1 31 31 H 1.09004 * 109.47527 * 51.74292 * 3 2 1 32 32 H 0.97001 * 120.00036 * 351.59693 * 4 2 1 33 33 H 1.09004 * 109.46976 * 57.63750 * 6 5 4 34 34 H 1.09004 * 109.47464 * 177.63661 * 6 5 4 35 35 H 1.08996 * 109.46974 * 297.64127 * 6 5 4 36 36 H 1.08997 * 109.88728 * 59.47870 * 12 11 9 37 37 H 1.09002 * 109.88290 * 298.30639 * 12 11 9 38 38 H 1.08999 * 110.72021 * 219.43992 * 13 12 11 39 39 H 1.08998 * 110.71530 * 96.17047 * 13 12 11 40 40 H 0.97001 * 119.99706 * 266.45280 * 16 14 13 41 41 H 0.97002 * 119.99985 * 359.97438 * 20 19 17 42 42 H 1.08996 * 110.36431 * 85.33421 * 25 11 9 43 43 H 1.09003 * 110.36360 * 323.01363 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 3.6319 -0.6630 -1.5674 6 6 4.4270 -1.5456 -0.1964 7 8 3.7281 -1.4168 -2.7682 8 8 3.9747 0.7156 -1.5385 9 6 2.0323 -0.7104 1.2305 10 8 2.3865 -0.0705 2.1980 11 7 2.0880 -2.0568 1.2558 12 6 1.5892 -2.9548 0.2041 13 6 1.8926 -4.3998 0.6535 14 6 3.0510 -4.2119 1.6685 15 1 4.0094 -4.1272 1.1562 16 7 3.0754 -5.3036 2.6452 17 6 3.7489 -6.4614 2.3612 18 1 4.2619 -6.5701 1.4169 19 6 3.7726 -7.4956 3.2868 20 7 3.1471 -7.3634 4.4374 21 14 4.6907 -9.0754 2.8991 22 1 3.7724 -10.0297 2.2275 23 1 5.8353 -8.7753 2.0018 24 1 5.1947 -9.6773 4.1597 25 6 2.6602 -2.8728 2.3421 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1200 1.4460 0.1476 30 1 1.8023 1.9119 -0.9545 31 1 1.5612 1.9972 0.8070 32 1 1.3965 -1.1641 -1.7706 33 1 4.0083 -2.5490 -0.1188 34 1 5.4993 -1.6125 -0.3805 35 1 4.2511 -1.0056 0.7339 36 1 2.0992 -2.7442 -0.7359 37 1 0.5140 -2.8224 0.0827 38 1 2.2154 -5.0069 -0.1922 39 1 1.0230 -4.8433 1.1384 40 1 2.6145 -5.2061 3.4931 41 1 2.6699 -6.5431 4.6386 42 1 1.9168 -3.0426 3.1209 43 1 3.5422 -2.3858 2.7581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690248888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:40 Heat of formation + Delta-G solvation = -94.485788 kcal Electronic energy + Delta-G solvation = -27215.918251 eV Core-core repulsion = 23423.660354 eV Total energy + Delta-G solvation = -3792.257896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87681 -39.22227 -38.30913 -37.53751 -37.10769 -36.27168 -33.30626 -31.77607 -31.03910 -30.49175 -29.43939 -28.25115 -25.92430 -24.98094 -22.97308 -21.86964 -20.97272 -20.33030 -19.53493 -18.89248 -18.51499 -17.61054 -17.27945 -17.10622 -16.84221 -16.40312 -15.96424 -15.70122 -15.36024 -14.81249 -14.57453 -14.51555 -14.19241 -14.17244 -13.95919 -13.83059 -13.65840 -13.36560 -13.31463 -13.15230 -13.00709 -12.86369 -12.80334 -12.68918 -12.52826 -12.40397 -12.20652 -11.92947 -11.88152 -11.75079 -11.54124 -11.29538 -10.94799 -10.43558 -9.80596 -9.16615 -8.38946 -5.35615 -0.87080 1.13812 1.60202 1.65152 1.68998 1.69946 1.83666 2.62374 2.71098 3.04638 3.18894 3.39105 3.52085 3.59960 3.70687 3.80604 3.83606 3.87935 3.96019 4.08674 4.15119 4.19163 4.33230 4.51940 4.67437 4.73077 4.76708 4.78505 4.81104 4.90761 4.95675 5.11249 5.13456 5.20611 5.32310 5.36749 5.60781 5.96129 6.31248 6.48918 6.85662 7.05279 7.94562 8.05498 9.12511 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.003914 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.909003 B = 7151.714632 C = 7781.254043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.175 3.825 3 C -0.159 4.159 4 N -1.097 6.097 5 S 2.626 3.374 6 C -0.682 4.682 7 O -0.977 6.977 8 O -0.972 6.972 9 C 0.504 3.496 10 O -0.563 6.563 11 N -0.603 5.603 12 C 0.096 3.904 13 C -0.151 4.151 14 C 0.165 3.835 15 H 0.064 0.936 16 N -0.740 5.740 17 C -0.328 4.328 18 H 0.072 0.928 19 C -0.100 4.100 20 N -0.976 5.976 21 Si 1.127 2.873 22 H -0.284 1.284 23 H -0.273 1.273 24 H -0.298 1.298 25 C 0.104 3.896 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.437 0.563 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.361 0.639 41 H 0.245 0.755 42 H 0.061 0.939 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 15.332 -14.305 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.083 3.917 3 C -0.218 4.218 4 N -0.861 5.861 5 S 2.720 3.280 6 C -0.832 4.832 7 O -0.968 6.968 8 O -0.962 6.962 9 C 0.292 3.708 10 O -0.441 6.441 11 N -0.337 5.337 12 C -0.026 4.026 13 C -0.192 4.192 14 C 0.056 3.944 15 H 0.082 0.918 16 N -0.381 5.381 17 C -0.459 4.459 18 H 0.090 0.910 19 C -0.291 4.291 20 N -0.624 5.624 21 Si 0.952 3.048 22 H -0.211 1.211 23 H -0.198 1.198 24 H -0.225 1.225 25 C -0.020 4.020 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.277 0.723 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.194 0.806 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.826 14.721 -14.096 20.945 hybrid contribution -0.675 0.721 0.738 1.233 sum -5.501 15.442 -13.358 21.146 Atomic orbital electron populations 1.22097 0.87837 1.04927 1.05527 1.20390 0.99634 0.91946 0.79775 1.22391 1.02670 0.92279 1.04476 1.55647 1.26926 1.67987 1.35515 1.04279 0.73983 0.74655 0.75126 1.30859 1.16150 1.16027 1.20183 1.93602 1.85661 1.74090 1.43402 1.93608 1.83426 1.32048 1.87072 1.21470 0.78178 0.80734 0.90462 1.90744 1.49702 1.65771 1.37854 1.48555 1.58991 1.04835 1.21303 1.22570 1.01580 0.88102 0.90333 1.23309 1.00003 0.95369 1.00527 1.21485 0.96939 0.85708 0.90316 0.91794 1.42401 1.63253 1.14474 1.18007 1.20345 1.28021 0.94475 1.03099 0.90993 1.27089 1.02523 1.05582 0.93951 1.70972 1.37873 1.28732 1.24806 0.82622 0.75111 0.72073 0.74974 1.21082 1.19774 1.22455 1.22297 0.98064 0.91262 0.90378 0.90331 0.87572 0.89951 0.91738 0.88920 0.90137 0.72342 0.84437 0.83290 0.86351 0.89875 0.87717 0.89649 0.91466 0.80635 0.94446 0.92100 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.54 71.98 0.61 -0.88 16 2 C 0.17 2.91 0.77 2.86 0.00 2.91 16 3 C -0.16 -3.00 6.62 71.98 0.48 -2.52 16 4 N -1.10 -15.49 3.07 -155.19 -0.48 -15.96 16 5 S 2.63 51.55 5.57 -56.49 -0.31 51.24 16 6 C -0.68 -13.73 8.72 113.37 0.99 -12.74 16 7 O -0.98 -23.75 18.08 -127.65 -2.31 -26.06 16 8 O -0.97 -23.94 14.52 -127.65 -1.85 -25.80 16 9 C 0.50 12.12 4.06 87.66 0.36 12.47 16 10 O -0.56 -17.97 16.41 -3.02 -0.05 -18.02 16 11 N -0.60 -14.24 1.73 -811.78 -1.41 -15.65 16 12 C 0.10 1.80 4.73 86.73 0.41 2.21 16 13 C -0.15 -4.09 6.65 31.79 0.21 -3.88 16 14 C 0.17 5.67 3.15 46.38 0.15 5.82 16 15 H 0.06 2.21 7.04 -2.39 -0.02 2.20 16 16 N -0.74 -34.06 5.28 -316.37 -1.67 -35.73 16 17 C -0.33 -17.11 9.98 84.03 0.84 -16.27 16 18 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 19 C -0.10 -5.52 5.50 84.86 0.47 -5.05 16 20 N -0.98 -58.97 13.70 21.65 0.30 -58.67 16 21 Si 1.13 49.83 29.92 68.60 2.05 51.88 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 25 C 0.10 3.20 6.36 86.86 0.55 3.76 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.08 0.68 6.54 -2.39 -0.02 0.66 16 29 H 0.06 1.50 6.16 -2.38 -0.01 1.49 16 30 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 31 H 0.08 1.44 8.11 -2.38 -0.02 1.42 16 32 H 0.44 3.56 7.99 -96.74 -0.77 2.79 16 33 H 0.14 2.82 4.01 -2.39 -0.01 2.81 16 34 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.12 2.73 5.98 -2.39 -0.01 2.71 16 36 H 0.08 1.21 4.56 -2.39 -0.01 1.20 16 37 H 0.10 1.37 6.71 -2.39 -0.02 1.35 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.36 17.70 6.54 -92.71 -0.61 17.10 16 41 H 0.25 14.72 6.77 -92.71 -0.63 14.09 16 42 H 0.06 2.01 8.00 -2.39 -0.02 1.99 16 43 H 0.07 2.20 8.09 -2.39 -0.02 2.18 16 Total: -1.00 -75.35 337.81 -0.85 -76.20 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.18 Total: 30.74 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.06 Total: -14.17 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -3.26 Total: -126.01 kcal Atomic # 8 Polarization: -65.67 SS G_CDS: -4.21 Total: -69.88 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.88 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.31 Total: 51.24 kcal Total: -75.35 -0.85 -76.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690248888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.288 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds