Wall clock time and date at job start Fri Apr 10 2020 18:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47017 * 55.00082 * 4 3 2 6 6 C 1.50698 * 109.47721 * 175.00208 * 4 3 2 7 7 O 1.21282 * 119.99354 * 34.99472 * 6 4 3 8 8 N 1.34767 * 120.00566 * 215.00413 * 6 4 3 9 9 C 1.47428 * 125.64925 * 0.02562 * 8 6 4 10 10 C 1.54904 * 104.83482 * 204.09386 * 9 8 6 11 11 C 1.55149 * 101.58154 * 322.99129 * 10 9 8 12 12 H 1.09000 * 110.72317 * 276.95803 * 11 10 9 13 13 N 1.46505 * 110.72184 * 153.86454 * 11 10 9 14 14 C 1.36945 * 119.99833 * 86.45108 * 13 11 10 15 15 H 1.07995 * 119.99941 * 359.97438 * 14 13 11 16 16 C 1.38810 * 119.99932 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00159 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99776 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47069 * 90.00255 * 18 16 14 20 20 H 1.48500 * 109.47074 * 209.99805 * 18 16 14 21 21 H 1.48500 * 109.47215 * 329.99940 * 18 16 14 22 22 C 1.47026 * 125.65029 * 179.71536 * 8 6 4 23 23 S 1.81400 * 109.47001 * 295.00301 * 4 3 2 24 24 N 1.65594 * 104.45204 * 299.99647 * 23 4 3 25 25 O 1.42101 * 110.54553 * 51.62614 * 23 4 3 26 26 O 1.42107 * 110.54160 * 188.37492 * 23 4 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.09002 * 110.36507 * 322.93491 * 9 8 6 35 35 H 1.08999 * 110.36469 * 85.14286 * 9 8 6 36 36 H 1.09007 * 111.00530 * 81.06751 * 10 9 8 37 37 H 1.09003 * 111.00591 * 204.87523 * 10 9 8 38 38 H 0.96996 * 120.00359 * 266.45434 * 13 11 10 39 39 H 0.96994 * 119.99951 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88007 * 298.38758 * 22 8 6 41 41 H 1.08997 * 109.88467 * 59.55542 * 22 8 6 42 42 H 0.97001 * 120.00190 * 150.00295 * 24 23 4 43 43 H 0.97003 * 119.99882 * 330.00151 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8428 6 6 4.0723 2.8579 -0.1244 7 8 3.4634 3.7656 0.4013 8 7 5.1980 3.1152 -0.8194 9 6 6.0320 2.1120 -1.5060 10 6 7.4376 2.7572 -1.5927 11 6 7.0820 4.2452 -1.8508 12 1 6.8895 4.4177 -2.9097 13 7 8.1508 5.1245 -1.3704 14 6 9.2130 5.4183 -2.1833 15 1 9.2629 5.0016 -3.1784 16 6 10.2259 6.2510 -1.7279 17 7 11.2470 6.5331 -2.5090 18 14 10.1406 6.9701 -0.0059 19 1 10.8078 6.0489 0.9488 20 1 10.8268 8.2869 0.0152 21 1 8.7194 7.1461 0.3871 22 6 5.7941 4.4435 -1.0237 23 16 4.1752 0.7195 1.5490 24 7 3.5576 1.7003 2.7317 25 8 3.5628 -0.5411 1.7838 26 8 5.5827 0.8819 1.6587 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 6.0727 1.1907 -0.9250 35 1 5.6417 1.9133 -2.5041 36 1 7.9791 2.6420 -0.6537 37 1 8.0078 2.3414 -2.4235 38 1 8.1062 5.4984 -0.4765 39 1 11.9550 7.1146 -2.1907 40 1 5.0977 5.0829 -1.5661 41 1 6.0395 4.8919 -0.0610 42 1 3.3544 1.3355 3.6072 43 1 3.3990 2.6396 2.5489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690671717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:47 Heat of formation + Delta-G solvation = -92.312418 kcal Electronic energy + Delta-G solvation = -26100.606644 eV Core-core repulsion = 22308.442992 eV Total energy + Delta-G solvation = -3792.163652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.37840 -37.90887 -37.57994 -36.32892 -35.73006 -34.41712 -33.38275 -31.95385 -31.07119 -29.93370 -28.25873 -25.45352 -23.47685 -22.80848 -21.79014 -20.42941 -20.09730 -19.43557 -18.34165 -17.89925 -17.68395 -17.04486 -16.74234 -16.31608 -15.53360 -15.41608 -14.83373 -14.49654 -14.22579 -14.04268 -13.96114 -13.40482 -13.25182 -12.94553 -12.70865 -12.59272 -12.53825 -12.45518 -12.37592 -12.14637 -12.05657 -11.83106 -11.49893 -11.37525 -11.30676 -10.94032 -10.79007 -10.68589 -10.59513 -10.57573 -10.16321 -10.11124 -9.67604 -9.04119 -8.75972 -7.40072 -5.85617 -3.23705 -0.25569 2.21809 2.39361 2.70426 3.21330 3.34383 3.37928 3.42763 3.63203 3.92694 4.37742 4.45725 4.52466 4.68639 4.77925 4.79646 4.97642 5.09727 5.13578 5.26361 5.31603 5.43378 5.45235 5.50029 5.55281 5.71043 5.72438 5.76418 5.79770 5.86086 5.95789 6.06229 6.13635 6.25757 6.45883 6.73914 6.81972 7.27646 7.74557 7.87780 8.32516 9.08856 9.81419 9.98932 11.31928 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.003341 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.417030 B = 8378.616541 C = 8657.639313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.168 4.168 3 C -0.085 4.085 4 C -0.616 4.616 5 H 0.159 0.841 6 C 0.543 3.457 7 O -0.530 6.530 8 N -0.595 5.595 9 C 0.086 3.914 10 C -0.152 4.152 11 C 0.177 3.823 12 H 0.075 0.925 13 N -0.739 5.739 14 C -0.251 4.251 15 H 0.093 0.907 16 C 0.010 3.990 17 N -0.929 5.929 18 Si 0.883 3.117 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.097 3.903 23 S 2.627 3.373 24 N -1.243 6.243 25 O -0.948 6.948 26 O -0.941 6.941 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.364 0.636 39 H 0.261 0.739 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.421 0.579 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.949 -13.932 6.071 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C -0.123 4.123 4 C -0.726 4.726 5 H 0.177 0.823 6 C 0.328 3.672 7 O -0.408 6.408 8 N -0.328 5.328 9 C -0.037 4.037 10 C -0.193 4.193 11 C 0.066 3.934 12 H 0.093 0.907 13 N -0.381 5.381 14 C -0.380 4.380 15 H 0.111 0.889 16 C -0.186 4.186 17 N -0.576 5.576 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.026 4.026 23 S 2.713 3.287 24 N -0.919 5.919 25 O -0.937 6.937 26 O -0.930 6.930 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.198 0.802 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.251 0.749 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.502 -14.285 6.136 25.731 hybrid contribution -0.341 1.186 0.891 1.522 sum -20.843 -13.100 7.028 25.601 Atomic orbital electron populations 1.21688 0.94882 1.02000 1.01922 1.22242 0.97445 0.95439 1.05426 1.21281 0.86349 0.99002 1.05681 1.30704 1.09658 1.06572 1.25628 0.82325 1.18749 0.80268 0.88209 0.80020 1.90731 1.56595 1.45568 1.47913 1.48413 1.23644 1.10636 1.50073 1.22636 0.92472 0.91882 0.96687 1.23545 0.93469 0.98490 1.03838 1.21162 0.86074 0.89397 0.96789 0.90741 1.42705 1.22869 1.56624 1.15940 1.19010 0.96599 1.24697 0.97713 0.88934 1.24665 0.96680 0.99610 0.97692 1.69691 1.11238 1.40650 1.36035 0.86584 0.77483 0.78975 0.85694 1.20862 1.21600 1.20222 1.22438 0.95852 0.82898 1.01430 1.04624 0.74703 0.73933 0.75414 1.53068 1.86283 1.24611 1.27939 1.93546 1.77177 1.39864 1.83150 1.93688 1.29405 1.85702 1.84161 0.92272 0.92484 0.92779 0.91319 0.87604 0.89539 0.89441 0.90984 0.90679 0.89967 0.89648 0.80237 0.92876 0.90696 0.90786 0.74915 0.74869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.17 -1.28 5.65 -26.73 -0.15 -1.43 16 3 C -0.08 -0.69 4.22 -26.73 -0.11 -0.81 16 4 C -0.62 -5.84 2.31 -27.89 -0.06 -5.91 16 5 H 0.16 1.11 6.93 -51.92 -0.36 0.75 16 6 C 0.54 6.99 6.52 -10.99 -0.07 6.92 16 7 O -0.53 -7.81 15.59 5.56 0.09 -7.73 16 8 N -0.60 -8.19 3.33 -170.52 -0.57 -8.76 16 9 C 0.09 1.04 6.24 -2.53 -0.02 1.03 16 10 C -0.15 -2.35 6.77 -24.59 -0.17 -2.52 16 11 C 0.18 3.11 3.58 -66.09 -0.24 2.88 16 12 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 13 N -0.74 -16.57 5.06 -51.65 -0.26 -16.83 16 14 C -0.25 -6.73 10.46 -15.06 -0.16 -6.89 16 15 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 16 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 17 N -0.93 -28.42 13.97 55.49 0.78 -27.64 16 18 Si 0.88 21.68 27.74 -169.99 -4.71 16.97 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 22 C 0.10 1.52 6.63 -3.06 -0.02 1.50 16 23 S 2.63 27.71 5.46 -107.50 -0.59 27.12 16 24 N -1.24 -10.65 8.91 60.35 0.54 -10.11 16 25 O -0.95 -10.84 14.89 -57.54 -0.86 -11.70 16 26 O -0.94 -13.55 17.71 -57.54 -1.02 -14.57 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.92 4.90 -51.93 -0.25 0.67 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.68 7.63 -51.93 -0.40 0.29 16 34 H 0.07 0.77 7.15 -51.93 -0.37 0.40 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.36 8.17 5.37 -40.82 -0.22 7.95 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 42 H 0.42 2.65 8.96 -34.47 -0.31 2.34 16 43 H 0.42 3.67 7.54 -34.47 -0.26 3.41 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -34.61 355.11 -8.37 -42.97 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.39 Total: 10.56 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.72 Total: -5.64 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.48 Total: -63.34 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.79 Total: -33.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Atomic # 16 Polarization: 27.71 SS G_CDS: -0.59 Total: 27.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.61 -8.37 -42.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690671717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.340 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds