Wall clock time and date at job start Fri Apr 10 2020 18:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47017 * 55.00082 * 4 3 2 6 6 C 1.50698 * 109.47721 * 175.00208 * 4 3 2 7 7 O 1.21282 * 119.99354 * 34.99472 * 6 4 3 8 8 N 1.34767 * 120.00566 * 215.00413 * 6 4 3 9 9 C 1.47428 * 125.64925 * 0.02562 * 8 6 4 10 10 C 1.54904 * 104.83482 * 204.09386 * 9 8 6 11 11 C 1.55149 * 101.58154 * 322.99129 * 10 9 8 12 12 H 1.09000 * 110.72317 * 276.95803 * 11 10 9 13 13 N 1.46505 * 110.72184 * 153.86454 * 11 10 9 14 14 C 1.36945 * 119.99833 * 86.45108 * 13 11 10 15 15 H 1.07995 * 119.99941 * 359.97438 * 14 13 11 16 16 C 1.38810 * 119.99932 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00159 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99776 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47069 * 90.00255 * 18 16 14 20 20 H 1.48500 * 109.47074 * 209.99805 * 18 16 14 21 21 H 1.48500 * 109.47215 * 329.99940 * 18 16 14 22 22 C 1.47026 * 125.65029 * 179.71536 * 8 6 4 23 23 S 1.81400 * 109.47001 * 295.00301 * 4 3 2 24 24 N 1.65594 * 104.45204 * 299.99647 * 23 4 3 25 25 O 1.42101 * 110.54553 * 51.62614 * 23 4 3 26 26 O 1.42107 * 110.54160 * 188.37492 * 23 4 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.09002 * 110.36507 * 322.93491 * 9 8 6 35 35 H 1.08999 * 110.36469 * 85.14286 * 9 8 6 36 36 H 1.09007 * 111.00530 * 81.06751 * 10 9 8 37 37 H 1.09003 * 111.00591 * 204.87523 * 10 9 8 38 38 H 0.96996 * 120.00359 * 266.45434 * 13 11 10 39 39 H 0.96994 * 119.99951 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88007 * 298.38758 * 22 8 6 41 41 H 1.08997 * 109.88467 * 59.55542 * 22 8 6 42 42 H 0.97001 * 120.00190 * 150.00295 * 24 23 4 43 43 H 0.97003 * 119.99882 * 330.00151 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8428 6 6 4.0723 2.8579 -0.1244 7 8 3.4634 3.7656 0.4013 8 7 5.1980 3.1152 -0.8194 9 6 6.0320 2.1120 -1.5060 10 6 7.4376 2.7572 -1.5927 11 6 7.0820 4.2452 -1.8508 12 1 6.8895 4.4177 -2.9097 13 7 8.1508 5.1245 -1.3704 14 6 9.2130 5.4183 -2.1833 15 1 9.2629 5.0016 -3.1784 16 6 10.2259 6.2510 -1.7279 17 7 11.2470 6.5331 -2.5090 18 14 10.1406 6.9701 -0.0059 19 1 10.8078 6.0489 0.9488 20 1 10.8268 8.2869 0.0152 21 1 8.7194 7.1461 0.3871 22 6 5.7941 4.4435 -1.0237 23 16 4.1752 0.7195 1.5490 24 7 3.5576 1.7003 2.7317 25 8 3.5628 -0.5411 1.7838 26 8 5.5827 0.8819 1.6587 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 6.0727 1.1907 -0.9250 35 1 5.6417 1.9133 -2.5041 36 1 7.9791 2.6420 -0.6537 37 1 8.0078 2.3414 -2.4235 38 1 8.1062 5.4984 -0.4765 39 1 11.9550 7.1146 -2.1907 40 1 5.0977 5.0829 -1.5661 41 1 6.0395 4.8919 -0.0610 42 1 3.3544 1.3355 3.6072 43 1 3.3990 2.6396 2.5489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690671717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:47 Heat of formation + Delta-G solvation = -120.531463 kcal Electronic energy + Delta-G solvation = -26101.830313 eV Core-core repulsion = 22308.442992 eV Total energy + Delta-G solvation = -3793.387322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44011 -39.07653 -38.50357 -37.25057 -36.45112 -36.10034 -34.11816 -33.64440 -32.11366 -31.20232 -29.56903 -26.40716 -24.99325 -24.13176 -22.39651 -21.80307 -21.13405 -20.33455 -19.75520 -19.14225 -18.68030 -17.97604 -17.65258 -17.43945 -16.59875 -16.35657 -16.18783 -15.83388 -15.36242 -15.27893 -14.78638 -14.75020 -14.45654 -14.11129 -13.77818 -13.59615 -13.54024 -13.40658 -13.37347 -13.32480 -13.16205 -13.12988 -12.76136 -12.49765 -12.29565 -12.20279 -12.01684 -11.93393 -11.82049 -11.69862 -11.42669 -11.33118 -11.04009 -10.99927 -9.86376 -9.35373 -8.03172 -5.37670 -1.09119 1.24286 1.38513 1.40494 1.45904 1.49055 1.79647 2.40574 2.47361 2.76146 3.14522 3.27567 3.48273 3.55459 3.67407 3.79090 3.88728 4.12095 4.19818 4.23537 4.29375 4.40000 4.55359 4.58225 4.71305 4.74607 4.88270 4.90037 4.96866 5.00797 5.10692 5.19409 5.25498 5.35372 5.38895 5.51072 5.76520 6.18163 6.20408 6.25059 6.71804 7.04985 7.79741 7.96802 9.17616 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.003341 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.417030 B = 8378.616541 C = 8657.639313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.169 4.169 3 C -0.084 4.084 4 C -0.604 4.604 5 H 0.189 0.811 6 C 0.540 3.460 7 O -0.550 6.550 8 N -0.600 5.600 9 C 0.089 3.911 10 C -0.150 4.150 11 C 0.168 3.832 12 H 0.078 0.922 13 N -0.746 5.746 14 C -0.227 4.227 15 H 0.068 0.932 16 C -0.058 4.058 17 N -0.980 5.980 18 Si 0.945 3.055 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.254 1.254 22 C 0.104 3.896 23 S 2.637 3.363 24 N -1.237 6.237 25 O -0.957 6.957 26 O -0.982 6.982 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.364 0.636 39 H 0.258 0.742 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.430 0.570 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.416 -15.165 6.555 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.206 4.206 3 C -0.123 4.123 4 C -0.714 4.714 5 H 0.206 0.794 6 C 0.327 3.673 7 O -0.429 6.429 8 N -0.333 5.333 9 C -0.033 4.033 10 C -0.191 4.191 11 C 0.059 3.941 12 H 0.096 0.904 13 N -0.389 5.389 14 C -0.357 4.357 15 H 0.086 0.914 16 C -0.250 4.250 17 N -0.630 5.630 18 Si 0.773 3.227 19 H -0.209 1.209 20 H -0.223 1.223 21 H -0.179 1.179 22 C -0.019 4.019 23 S 2.726 3.274 24 N -0.916 5.916 25 O -0.946 6.946 26 O -0.971 6.971 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.198 0.802 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.263 0.737 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -23.034 -15.577 6.657 28.593 hybrid contribution 0.320 1.503 0.678 1.679 sum -22.715 -14.075 7.335 27.710 Atomic orbital electron populations 1.21720 0.94225 1.02497 1.02327 1.22247 0.98091 0.94821 1.05481 1.21355 0.85127 0.99637 1.06153 1.30669 1.10570 1.04390 1.25798 0.79376 1.19195 0.79670 0.89322 0.79142 1.90726 1.57080 1.46652 1.48421 1.48459 1.24117 1.09989 1.50717 1.22762 0.89997 0.91674 0.98863 1.23380 0.95718 0.97019 1.02935 1.21377 0.85757 0.89797 0.97187 0.90429 1.42719 1.23047 1.57609 1.15495 1.18999 0.97184 1.22600 0.96945 0.91384 1.25396 0.96809 1.01164 1.01649 1.69851 1.12485 1.42472 1.38213 0.85556 0.78469 0.77601 0.81039 1.20855 1.22294 1.17872 1.22163 0.95072 0.84312 1.00378 1.04104 0.73800 0.73802 0.75743 1.52893 1.85905 1.24462 1.28299 1.93545 1.77012 1.40631 1.83446 1.93651 1.32094 1.86345 1.84991 0.91783 0.92342 0.92189 0.90128 0.88687 0.88919 0.89241 0.89123 0.87183 0.92036 0.89152 0.80205 0.93335 0.89927 0.92103 0.73722 0.74705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.17 -2.08 5.65 30.59 0.17 -1.91 16 3 C -0.08 -1.13 4.22 30.59 0.13 -1.00 16 4 C -0.60 -9.62 2.31 29.85 0.07 -9.56 16 5 H 0.19 1.83 6.93 -2.39 -0.02 1.81 16 6 C 0.54 12.51 6.52 87.66 0.57 13.08 16 7 O -0.55 -15.04 15.59 -3.03 -0.05 -15.09 16 8 N -0.60 -14.97 3.33 -811.78 -2.70 -17.67 16 9 C 0.09 1.88 6.24 86.85 0.54 2.42 16 10 C -0.15 -4.40 6.77 31.98 0.22 -4.19 16 11 C 0.17 5.71 3.58 46.18 0.17 5.88 16 12 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 13 N -0.75 -33.03 5.06 -317.31 -1.60 -34.63 16 14 C -0.23 -12.27 10.46 84.03 0.88 -11.39 16 15 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 16 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 17 N -0.98 -61.52 13.97 21.65 0.30 -61.22 16 18 Si 0.95 45.14 27.74 68.60 1.90 47.05 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.25 -11.03 6.52 99.48 0.65 -10.38 16 22 C 0.10 3.10 6.63 86.73 0.57 3.68 16 23 S 2.64 50.49 5.46 -56.49 -0.31 50.18 16 24 N -1.24 -19.19 8.91 37.02 0.33 -18.86 16 25 O -0.96 -20.01 14.89 -127.65 -1.90 -21.91 16 26 O -0.98 -26.93 17.71 -127.65 -2.26 -29.19 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.42 4.90 -2.39 -0.01 1.41 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.17 7.63 -2.39 -0.02 1.15 16 34 H 0.09 1.63 7.15 -2.39 -0.02 1.61 16 35 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.36 15.98 5.37 -92.71 -0.50 15.49 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 1.98 7.69 -2.39 -0.02 1.96 16 42 H 0.43 4.78 8.96 -96.75 -0.87 3.92 16 43 H 0.42 6.68 7.54 -96.75 -0.73 5.95 16 Total: -1.00 -75.18 355.11 -2.89 -78.07 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -1.10 Total: 30.03 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 4.50 Total: -6.76 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -3.67 Total: -132.38 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -4.21 Total: -66.19 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: 50.49 SS G_CDS: -0.31 Total: 50.18 kcal Total: -75.18 -2.89 -78.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690671717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.461 kcal (2) G-P(sol) polarization free energy of solvation -75.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds