Wall clock time and date at job start Fri Apr 10 2020 18:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47395 * 305.00572 * 4 3 2 6 6 C 1.50699 * 109.47053 * 184.99965 * 4 3 2 7 7 O 1.21277 * 120.00112 * 330.00153 * 6 4 3 8 8 N 1.34782 * 119.99734 * 150.00076 * 6 4 3 9 9 C 1.47022 * 125.64668 * 359.69182 * 8 6 4 10 10 C 1.54334 * 107.26188 * 178.84673 * 9 8 6 11 11 C 1.55157 * 103.02356 * 338.14158 * 10 9 8 12 12 H 1.08992 * 111.04130 * 277.21907 * 11 10 9 13 13 N 1.46504 * 111.00459 * 153.37796 * 11 10 9 14 14 C 1.36934 * 119.99899 * 92.80568 * 13 11 10 15 15 H 1.07997 * 119.99769 * 0.02562 * 14 13 11 16 16 C 1.38808 * 119.99886 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99924 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00416 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47202 * 89.99308 * 18 16 14 20 20 H 1.48493 * 109.47310 * 209.99793 * 18 16 14 21 21 H 1.48502 * 109.46504 * 330.00148 * 18 16 14 22 22 C 1.47419 * 125.64623 * 180.02562 * 8 6 4 23 23 S 1.81406 * 109.46879 * 65.00079 * 4 3 2 24 24 N 1.65600 * 104.44506 * 59.99910 * 23 4 3 25 25 O 1.42094 * 110.53907 * 171.62379 * 23 4 3 26 26 O 1.42096 * 110.54232 * 308.37678 * 23 4 3 27 27 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 28 28 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 29 29 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 31 31 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 32 32 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 33 33 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 34 34 H 1.08991 * 109.88466 * 298.39561 * 9 8 6 35 35 H 1.09008 * 109.88067 * 59.56168 * 9 8 6 36 36 H 1.09002 * 110.85252 * 219.67392 * 10 9 8 37 37 H 1.09000 * 110.66324 * 96.52748 * 10 9 8 38 38 H 0.96997 * 120.00115 * 272.80706 * 13 11 10 39 39 H 0.96998 * 120.00339 * 179.97438 * 17 16 14 40 40 H 1.09003 * 110.36571 * 322.92527 * 22 8 6 41 41 H 1.08999 * 110.37196 * 85.25330 * 22 8 6 42 42 H 0.96991 * 120.00510 * 0.02562 * 24 23 4 43 43 H 0.97005 * 119.99371 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8528 0.8408 6 6 4.0724 2.8579 0.1232 7 8 3.4168 3.7753 -0.3233 8 7 5.2503 3.1041 0.7301 9 6 6.1391 2.0916 1.3188 10 6 7.3759 2.8325 1.8696 11 6 7.3755 4.1594 1.0654 12 1 7.8441 4.0262 0.0904 13 7 8.0326 5.2303 1.8189 14 6 9.3685 5.4728 1.6404 15 1 9.9374 4.8749 0.9438 16 6 9.9910 6.4878 2.3538 17 7 11.2751 6.7205 2.1826 18 14 9.0067 7.5224 3.5581 19 1 9.0476 6.8912 4.9017 20 1 9.5918 8.8852 3.6333 21 1 7.5982 7.6131 3.0965 22 6 5.8576 4.4340 0.9197 23 16 4.1740 0.7199 -1.5511 24 7 3.5552 1.7012 -2.7328 25 8 5.5812 0.8824 -1.6619 26 8 3.5612 -0.5405 -1.7858 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 5.6250 1.5723 2.1275 35 1 6.4466 1.3785 0.5539 36 1 8.2861 2.2648 1.6765 37 1 7.2639 3.0278 2.9361 38 1 7.5215 5.7675 2.4442 39 1 11.7100 7.4300 2.6809 40 1 5.6681 5.0649 0.0513 41 1 5.4684 4.9036 1.8230 42 1 3.0046 2.4626 -2.4920 43 1 3.7440 1.5150 -3.6659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690671718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:50 Heat of formation + Delta-G solvation = -92.056933 kcal Electronic energy + Delta-G solvation = -26045.802056 eV Core-core repulsion = 22253.649482 eV Total energy + Delta-G solvation = -3792.152573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.35753 -37.91530 -37.53180 -36.32527 -35.74292 -34.41982 -33.38356 -31.96380 -31.08038 -29.94501 -28.23234 -25.46729 -23.46950 -22.77741 -21.80313 -20.36441 -20.18600 -19.38334 -18.44308 -17.97370 -17.69158 -17.01588 -16.40946 -16.27473 -15.85949 -15.41411 -14.82705 -14.43604 -14.26557 -14.05872 -13.83037 -13.43935 -13.19642 -13.02327 -12.68776 -12.60650 -12.49634 -12.43860 -12.37911 -12.25245 -12.00923 -11.85442 -11.51919 -11.37549 -11.30850 -10.94627 -10.81552 -10.67538 -10.59332 -10.53373 -10.16907 -10.10682 -9.68138 -9.04432 -8.73222 -7.41666 -5.85732 -3.24121 -0.27255 2.22526 2.40352 2.71658 3.17720 3.31483 3.33976 3.40210 3.60849 3.92014 4.41264 4.42654 4.50677 4.67357 4.75607 4.79008 5.02589 5.09781 5.13108 5.24645 5.37165 5.43463 5.46103 5.47228 5.54453 5.70777 5.75570 5.77914 5.80020 5.85071 5.96728 6.05827 6.15029 6.25109 6.48394 6.71346 6.80178 7.30381 7.76289 7.88459 8.32293 9.08488 9.80456 9.98071 11.31869 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.025055 B = 0.003225 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.293801 B = 8680.215493 C = 9148.879364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.086 4.086 4 C -0.613 4.613 5 H 0.161 0.839 6 C 0.544 3.456 7 O -0.528 6.528 8 N -0.596 5.596 9 C 0.081 3.919 10 C -0.153 4.153 11 C 0.176 3.824 12 H 0.081 0.919 13 N -0.737 5.737 14 C -0.251 4.251 15 H 0.094 0.906 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.094 3.906 23 S 2.627 3.373 24 N -1.245 6.245 25 O -0.943 6.943 26 O -0.948 6.948 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.363 0.637 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.420 0.580 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.907 -14.400 -5.158 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.125 4.125 4 C -0.723 4.723 5 H 0.179 0.821 6 C 0.329 3.671 7 O -0.405 6.405 8 N -0.328 5.328 9 C -0.042 4.042 10 C -0.194 4.194 11 C 0.065 3.935 12 H 0.099 0.901 13 N -0.378 5.378 14 C -0.380 4.380 15 H 0.111 0.889 16 C -0.187 4.187 17 N -0.576 5.576 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.029 4.029 23 S 2.715 3.285 24 N -0.922 5.922 25 O -0.932 6.932 26 O -0.936 6.936 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.197 0.803 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.248 0.752 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -20.396 -14.786 -5.459 25.777 hybrid contribution -1.008 1.427 1.313 2.185 sum -21.404 -13.358 -4.146 25.569 Atomic orbital electron populations 1.21687 0.94842 1.02043 1.01936 1.22260 0.97505 0.95361 1.05535 1.21298 0.86464 0.99029 1.05672 1.30635 1.09520 1.06810 1.25343 0.82140 1.18675 0.80642 0.88184 0.79633 1.90732 1.55934 1.44869 1.48965 1.48348 1.19036 1.10417 1.55039 1.22455 0.91901 0.91992 0.97884 1.23375 0.95589 0.99124 1.01271 1.21300 0.88875 0.87724 0.95621 0.90111 1.42607 1.08353 1.37746 1.49118 1.19058 0.83132 1.14476 1.21364 0.88857 1.24677 0.95613 0.98711 0.99715 1.69694 1.08948 1.34087 1.44842 0.86570 0.79628 0.80533 0.81888 1.20994 1.21592 1.20256 1.22745 0.94790 0.83168 1.02225 1.04588 0.74491 0.74126 0.75342 1.52972 1.70877 1.46611 1.21719 1.93662 1.29657 1.85722 1.84161 1.93555 1.77185 1.40067 1.82831 0.92784 0.92442 0.92240 0.87490 0.91275 0.89327 0.89747 0.91568 0.90009 0.89705 0.90557 0.80328 0.92873 0.89780 0.91119 0.75184 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.17 -1.27 5.65 -26.73 -0.15 -1.42 16 3 C -0.09 -0.69 4.15 -26.73 -0.11 -0.80 16 4 C -0.61 -5.72 2.35 -27.88 -0.07 -5.78 16 5 H 0.16 1.10 7.12 -51.93 -0.37 0.73 16 6 C 0.54 6.99 6.62 -10.98 -0.07 6.92 16 7 O -0.53 -7.80 15.92 5.56 0.09 -7.72 16 8 N -0.60 -8.25 3.33 -170.50 -0.57 -8.82 16 9 C 0.08 1.00 6.11 -3.06 -0.02 0.98 16 10 C -0.15 -2.31 6.64 -24.89 -0.17 -2.48 16 11 C 0.18 3.20 3.72 -65.77 -0.24 2.95 16 12 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 13 N -0.74 -16.41 5.05 -51.34 -0.26 -16.67 16 14 C -0.25 -6.76 10.44 -15.06 -0.16 -6.92 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 17 N -0.93 -28.42 13.97 55.49 0.78 -27.64 16 18 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 22 C 0.09 1.49 6.55 -2.52 -0.02 1.47 16 23 S 2.63 26.86 5.46 -107.50 -0.59 26.27 16 24 N -1.24 -10.30 9.13 60.35 0.55 -9.75 16 25 O -0.94 -12.92 16.81 -57.54 -0.97 -13.89 16 26 O -0.95 -10.76 14.89 -57.54 -0.86 -11.62 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.93 4.90 -51.93 -0.25 0.67 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.62 6.96 -51.93 -0.36 0.26 16 34 H 0.07 0.63 7.87 -51.93 -0.41 0.23 16 35 H 0.08 0.98 6.91 -51.92 -0.36 0.62 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.36 7.93 5.62 -40.82 -0.23 7.70 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 41 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 42 H 0.42 3.20 7.18 -34.47 -0.25 2.95 16 43 H 0.42 2.72 8.96 -34.47 -0.31 2.42 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -34.54 353.67 -8.28 -42.82 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.34 Total: 10.57 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.73 Total: -5.51 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 0.50 Total: -62.88 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.74 Total: -33.22 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Atomic # 16 Polarization: 26.86 SS G_CDS: -0.59 Total: 26.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.54 -8.28 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690671718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.240 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds