Wall clock time and date at job start Fri Apr 10 2020 18:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99472 * 2 1 4 4 H 1.07998 * 120.00075 * 202.33663 * 3 2 1 5 5 C 1.38812 * 120.00129 * 22.34503 * 3 2 1 6 6 N 1.31616 * 120.00077 * 11.34372 * 5 3 2 7 7 Si 1.86801 * 119.99811 * 191.34295 * 5 3 2 8 8 H 1.48499 * 109.47182 * 60.00182 * 7 5 3 9 9 H 1.48505 * 109.46898 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47389 * 299.99861 * 7 5 3 11 11 C 1.46495 * 120.00440 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46918 * 270.00528 * 11 2 1 13 13 N 1.46511 * 109.46708 * 179.97438 * 12 11 2 14 14 C 1.34774 * 119.99664 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00363 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00008 * 180.02562 * 14 13 12 17 17 C 1.52994 * 109.47322 * 179.97438 * 16 14 13 18 18 C 1.52997 * 108.58326 * 300.70045 * 17 16 14 19 19 C 1.53205 * 108.64604 * 182.70007 * 17 16 14 20 20 C 1.55556 * 106.24411 * 266.43829 * 19 17 16 21 21 S 1.83896 * 99.64299 * 323.01376 * 20 19 17 22 22 O 1.42103 * 111.46885 * 144.08613 * 21 20 19 23 23 O 1.42099 * 111.46899 * 283.93722 * 21 20 19 24 24 N 1.46454 * 108.64835 * 58.70160 * 17 16 14 25 25 H 1.08992 * 109.47304 * 274.20750 * 1 2 3 26 26 H 1.09002 * 109.47390 * 34.21609 * 1 2 3 27 27 H 1.09003 * 109.46488 * 154.20590 * 1 2 3 28 28 H 0.97002 * 120.00411 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.47080 * 150.00169 * 11 2 1 30 30 H 1.09000 * 109.46883 * 30.00225 * 11 2 1 31 31 H 1.09000 * 109.47096 * 299.99567 * 12 11 2 32 32 H 1.09003 * 109.47296 * 60.00352 * 12 11 2 33 33 H 0.96997 * 120.00174 * 359.97438 * 13 12 11 34 34 H 1.09001 * 109.47212 * 300.00421 * 16 14 13 35 35 H 1.08999 * 109.46880 * 59.99805 * 16 14 13 36 36 H 1.08995 * 109.46877 * 59.29937 * 18 17 16 37 37 H 1.09001 * 109.47094 * 179.29390 * 18 17 16 38 38 H 1.08996 * 109.47460 * 299.29794 * 18 17 16 39 39 H 1.08994 * 110.10008 * 25.63600 * 19 17 16 40 40 H 1.09007 * 110.09656 * 147.24524 * 19 17 16 41 41 H 1.09001 * 111.36640 * 80.61223 * 20 19 17 42 42 H 1.09001 * 111.37278 * 205.41074 * 20 19 17 43 43 H 0.97004 * 126.07753 * 299.35772 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2212 -0.3555 5 6 1.5336 2.3430 0.4570 6 7 0.3840 2.2690 1.0935 7 14 2.3365 4.0048 0.1687 8 1 2.4914 4.2333 -1.2904 9 1 1.4841 5.0736 0.7488 10 1 3.6717 4.0289 0.8180 11 6 2.1976 -1.2686 0.0006 12 6 2.4525 -1.7097 1.4433 13 7 3.1846 -2.9787 1.4438 14 6 3.5218 -3.5616 2.6112 15 8 3.2189 -3.0359 3.6614 16 6 4.2754 -4.8666 2.6119 17 6 4.5313 -5.3071 4.0545 18 6 5.3438 -4.2193 4.7596 19 6 5.3558 -6.5983 4.0335 20 6 4.3331 -7.7686 4.0983 21 16 3.0931 -7.0315 5.2388 22 8 1.7707 -7.4146 4.8873 23 8 3.5476 -7.0524 6.5850 24 7 3.2431 -5.4461 4.7372 25 1 -0.3633 0.0754 1.0248 26 1 -0.3634 0.8498 -0.5779 27 1 -0.3632 -0.9253 -0.4472 28 1 -0.0467 3.0775 1.4126 29 1 3.1500 -1.1384 -0.5133 30 1 1.6086 -2.0285 -0.5130 31 1 3.0415 -0.9498 1.9568 32 1 1.5000 -1.8399 1.9571 33 1 3.4266 -3.3994 0.6039 34 1 3.6863 -5.6266 2.0986 35 1 5.2276 -4.7366 2.0977 36 1 4.7892 -3.2812 4.7398 37 1 5.5239 -4.5131 5.7937 38 1 6.2972 -4.0885 4.2477 39 1 5.9352 -6.6577 3.1122 40 1 6.0198 -6.6327 4.8972 41 1 3.9001 -7.9724 3.1189 42 1 4.7821 -8.6653 4.5256 43 1 2.5910 -4.7414 4.8756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690991301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:55 Heat of formation + Delta-G solvation = -74.314777 kcal Electronic energy + Delta-G solvation = -25501.388198 eV Core-core repulsion = 21710.004982 eV Total energy + Delta-G solvation = -3791.383216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.28735 -38.00905 -37.17929 -36.07503 -35.99676 -34.19200 -32.06010 -31.50530 -30.77745 -28.93451 -27.27383 -25.88148 -24.50763 -23.21581 -21.01491 -20.71277 -20.06324 -19.72378 -17.73289 -17.22838 -16.80027 -16.40359 -16.00901 -15.65291 -15.47497 -14.97742 -14.77713 -14.61977 -14.08965 -13.86697 -13.70851 -13.58663 -13.28876 -12.79883 -12.72518 -12.33236 -12.29046 -12.25266 -12.16710 -12.07726 -11.73918 -11.47477 -11.25787 -11.15271 -10.89286 -10.87256 -10.80713 -10.62482 -10.31432 -10.04562 -9.92166 -9.63474 -9.48328 -8.68428 -8.58281 -6.85663 -5.77341 -3.25026 0.03424 2.40901 2.78772 3.31645 3.37230 3.37864 3.42356 3.43220 3.63435 3.88457 4.15893 4.29926 4.47172 4.59988 4.76674 4.89289 5.00149 5.11546 5.14683 5.24984 5.37226 5.39093 5.47343 5.60039 5.77700 5.83149 5.90199 5.96147 6.23095 6.36669 6.65268 6.69947 6.70211 6.93201 7.14659 7.33928 7.68586 7.74446 7.76799 8.33583 8.45390 9.17722 9.79818 10.27828 11.27567 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.002617 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.783228 B =10698.038825 C =10887.997915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.263 4.263 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.724 5.724 14 C 0.510 3.490 15 O -0.536 6.536 16 C -0.151 4.151 17 C 0.160 3.840 18 C -0.172 4.172 19 C -0.117 4.117 20 C -0.597 4.597 21 S 2.567 3.433 22 O -0.963 6.963 23 O -0.956 6.956 24 N -1.078 6.078 25 H 0.030 0.970 26 H 0.047 0.953 27 H -0.002 1.002 28 H 0.255 0.745 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.569 -21.568 1.990 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.374 5.374 14 C 0.295 3.705 15 O -0.414 6.414 16 C -0.193 4.193 17 C 0.069 3.931 18 C -0.231 4.231 19 C -0.156 4.156 20 C -0.727 4.727 21 S 2.661 3.339 22 O -0.952 6.952 23 O -0.945 6.945 24 N -0.848 5.848 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.228 0.772 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.595 -21.435 3.522 24.169 hybrid contribution 0.708 1.131 -0.953 1.640 sum 11.303 -20.304 2.569 23.380 Atomic orbital electron populations 1.20850 0.82130 0.95754 0.99493 1.43913 1.02062 1.00332 1.85576 1.19166 0.98145 0.85264 1.36646 0.91296 1.25070 0.97626 0.98700 0.98037 1.70055 1.17718 1.27416 1.39764 0.86295 0.78566 0.83546 0.77859 1.21010 1.21553 1.20866 1.20987 0.96291 0.88947 0.92217 1.22537 0.95756 0.82766 1.02129 1.46243 1.58037 1.25303 1.07866 1.20409 0.79810 0.86004 0.84229 1.90585 1.54655 1.65241 1.30942 1.22266 1.02243 0.96744 0.98071 1.20246 0.84668 0.96381 0.91828 1.22540 0.99460 1.00974 1.00078 1.22538 0.97409 0.88599 1.07035 1.30807 1.16203 1.08073 1.17617 1.06428 0.75682 0.75786 0.76026 1.93617 1.34980 1.82070 1.84564 1.93650 1.82769 1.85574 1.32518 1.55059 1.26603 1.29020 1.74146 0.95212 0.93420 0.98392 0.93526 0.93415 0.94052 0.91305 0.92171 0.77230 0.88570 0.87901 0.88181 0.91943 0.92204 0.86945 0.88082 0.84074 0.84256 0.71186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 9.01 59.85 0.54 4.49 16 2 N -0.60 -14.61 2.93 -181.12 -0.53 -15.14 16 3 C -0.26 -7.08 9.67 -15.06 -0.15 -7.22 16 4 H 0.07 1.80 7.84 -52.49 -0.41 1.38 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.91 -26.29 10.58 55.49 0.59 -25.70 16 7 Si 0.91 21.65 29.57 -169.99 -5.03 16.62 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.14 2.73 5.82 -4.05 -0.02 2.70 16 12 C 0.09 1.72 6.00 -4.04 -0.02 1.69 16 13 N -0.72 -9.51 5.56 -60.29 -0.33 -9.85 16 14 C 0.51 6.60 7.32 -10.99 -0.08 6.52 16 15 O -0.54 -8.96 11.80 5.55 0.07 -8.89 16 16 C -0.15 -1.17 4.70 -27.89 -0.13 -1.31 16 17 C 0.16 1.32 0.83 -131.74 -0.11 1.21 16 18 C -0.17 -1.67 8.15 37.16 0.30 -1.36 16 19 C -0.12 -0.56 5.56 -25.27 -0.14 -0.70 16 20 C -0.60 -2.79 7.65 38.52 0.29 -2.49 16 21 S 2.57 25.23 6.46 -107.50 -0.69 24.54 16 22 O -0.96 -13.11 18.14 -57.40 -1.04 -14.15 16 23 O -0.96 -12.57 18.15 -57.40 -1.04 -13.61 16 24 N -1.08 -11.43 5.65 0.60 0.00 -11.42 16 25 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 26 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 27 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 30 H 0.04 0.69 7.86 -51.93 -0.41 0.29 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.39 3.80 8.47 -40.82 -0.35 3.46 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.52 8.04 -51.93 -0.42 0.10 16 36 H 0.10 1.31 5.35 -51.93 -0.28 1.04 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.11 0.25 7.71 -51.93 -0.40 -0.15 16 40 H 0.10 0.42 7.83 -51.92 -0.41 0.02 16 41 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.14 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.44 5.55 7.26 -40.18 -0.29 5.25 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -37.18 356.16 -8.89 -46.07 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.64 Total: 2.58 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 0.39 Total: 3.57 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.27 Total: -62.11 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -2.02 Total: -36.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 25.23 SS G_CDS: -0.69 Total: 24.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.18 -8.89 -46.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690991301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.242 kcal (2) G-P(sol) polarization free energy of solvation -37.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds