Wall clock time and date at job start Fri Apr 10 2020 18:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99472 * 2 1 4 4 H 1.07998 * 120.00075 * 202.33663 * 3 2 1 5 5 C 1.38812 * 120.00129 * 22.34503 * 3 2 1 6 6 N 1.31616 * 120.00077 * 11.34372 * 5 3 2 7 7 Si 1.86801 * 119.99811 * 191.34295 * 5 3 2 8 8 H 1.48499 * 109.47182 * 60.00182 * 7 5 3 9 9 H 1.48505 * 109.46898 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47389 * 299.99861 * 7 5 3 11 11 C 1.46495 * 120.00440 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46918 * 270.00528 * 11 2 1 13 13 N 1.46511 * 109.46708 * 179.97438 * 12 11 2 14 14 C 1.34774 * 119.99664 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00363 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00008 * 180.02562 * 14 13 12 17 17 C 1.52994 * 109.47322 * 179.97438 * 16 14 13 18 18 C 1.52997 * 108.58326 * 300.70045 * 17 16 14 19 19 C 1.53205 * 108.64604 * 182.70007 * 17 16 14 20 20 C 1.55556 * 106.24411 * 266.43829 * 19 17 16 21 21 S 1.83896 * 99.64299 * 323.01376 * 20 19 17 22 22 O 1.42103 * 111.46885 * 144.08613 * 21 20 19 23 23 O 1.42099 * 111.46899 * 283.93722 * 21 20 19 24 24 N 1.46454 * 108.64835 * 58.70160 * 17 16 14 25 25 H 1.08992 * 109.47304 * 274.20750 * 1 2 3 26 26 H 1.09002 * 109.47390 * 34.21609 * 1 2 3 27 27 H 1.09003 * 109.46488 * 154.20590 * 1 2 3 28 28 H 0.97002 * 120.00411 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.47080 * 150.00169 * 11 2 1 30 30 H 1.09000 * 109.46883 * 30.00225 * 11 2 1 31 31 H 1.09000 * 109.47096 * 299.99567 * 12 11 2 32 32 H 1.09003 * 109.47296 * 60.00352 * 12 11 2 33 33 H 0.96997 * 120.00174 * 359.97438 * 13 12 11 34 34 H 1.09001 * 109.47212 * 300.00421 * 16 14 13 35 35 H 1.08999 * 109.46880 * 59.99805 * 16 14 13 36 36 H 1.08995 * 109.46877 * 59.29937 * 18 17 16 37 37 H 1.09001 * 109.47094 * 179.29390 * 18 17 16 38 38 H 1.08996 * 109.47460 * 299.29794 * 18 17 16 39 39 H 1.08994 * 110.10008 * 25.63600 * 19 17 16 40 40 H 1.09007 * 110.09656 * 147.24524 * 19 17 16 41 41 H 1.09001 * 111.36640 * 80.61223 * 20 19 17 42 42 H 1.09001 * 111.37278 * 205.41074 * 20 19 17 43 43 H 0.97004 * 126.07753 * 299.35772 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2212 -0.3555 5 6 1.5336 2.3430 0.4570 6 7 0.3840 2.2690 1.0935 7 14 2.3365 4.0048 0.1687 8 1 2.4914 4.2333 -1.2904 9 1 1.4841 5.0736 0.7488 10 1 3.6717 4.0289 0.8180 11 6 2.1976 -1.2686 0.0006 12 6 2.4525 -1.7097 1.4433 13 7 3.1846 -2.9787 1.4438 14 6 3.5218 -3.5616 2.6112 15 8 3.2189 -3.0359 3.6614 16 6 4.2754 -4.8666 2.6119 17 6 4.5313 -5.3071 4.0545 18 6 5.3438 -4.2193 4.7596 19 6 5.3558 -6.5983 4.0335 20 6 4.3331 -7.7686 4.0983 21 16 3.0931 -7.0315 5.2388 22 8 1.7707 -7.4146 4.8873 23 8 3.5476 -7.0524 6.5850 24 7 3.2431 -5.4461 4.7372 25 1 -0.3633 0.0754 1.0248 26 1 -0.3634 0.8498 -0.5779 27 1 -0.3632 -0.9253 -0.4472 28 1 -0.0467 3.0775 1.4126 29 1 3.1500 -1.1384 -0.5133 30 1 1.6086 -2.0285 -0.5130 31 1 3.0415 -0.9498 1.9568 32 1 1.5000 -1.8399 1.9571 33 1 3.4266 -3.3994 0.6039 34 1 3.6863 -5.6266 2.0986 35 1 5.2276 -4.7366 2.0977 36 1 4.7892 -3.2812 4.7398 37 1 5.5239 -4.5131 5.7937 38 1 6.2972 -4.0885 4.2477 39 1 5.9352 -6.6577 3.1122 40 1 6.0198 -6.6327 4.8972 41 1 3.9001 -7.9724 3.1189 42 1 4.7821 -8.6653 4.5256 43 1 2.5910 -4.7414 4.8756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690991301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:54 Heat of formation + Delta-G solvation = -106.669198 kcal Electronic energy + Delta-G solvation = -25502.791191 eV Core-core repulsion = 21710.004982 eV Total energy + Delta-G solvation = -3792.786209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18864 -38.88468 -38.05398 -37.68588 -36.89403 -35.61605 -33.31260 -32.60090 -31.65247 -30.13750 -28.41665 -27.89392 -25.24109 -24.65313 -22.38867 -21.85404 -21.02879 -20.45211 -18.81063 -18.47621 -18.05155 -17.36639 -16.79098 -16.75467 -16.59582 -16.53926 -15.91743 -15.52764 -15.33191 -15.03395 -14.85822 -14.50252 -14.27710 -14.08680 -14.00273 -13.55330 -13.21221 -13.19509 -13.04879 -13.01863 -12.77070 -12.62598 -12.58994 -12.54773 -12.45689 -12.11704 -12.09073 -12.00495 -11.86959 -11.73230 -11.36310 -10.66705 -10.56793 -10.34010 -9.93512 -8.86653 -7.85532 -5.35188 -0.62811 1.46167 1.48271 1.54970 1.71675 1.81073 2.29249 2.53037 2.74009 3.10259 3.30182 3.39684 3.59999 3.69847 3.78799 3.99864 4.11150 4.26473 4.34212 4.39854 4.57116 4.68176 4.68632 4.75685 4.77065 4.83419 4.89344 4.97508 5.08194 5.09714 5.20854 5.31315 5.32518 5.49174 5.61535 5.70439 5.72572 6.22060 6.30295 6.74825 7.11884 7.47796 7.83410 8.25808 9.18082 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.002617 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.783228 B =10698.038825 C =10887.997915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.267 4.267 4 H 0.078 0.922 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.273 1.273 9 H -0.298 1.298 10 H -0.276 1.276 11 C 0.146 3.854 12 C 0.117 3.883 13 N -0.713 5.713 14 C 0.499 3.501 15 O -0.581 6.581 16 C -0.141 4.141 17 C 0.149 3.851 18 C -0.172 4.172 19 C -0.113 4.113 20 C -0.546 4.546 21 S 2.544 3.456 22 O -1.014 7.014 23 O -1.006 7.006 24 N -1.092 6.092 25 H -0.004 1.004 26 H 0.021 0.979 27 H 0.035 0.965 28 H 0.247 0.753 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.417 0.583 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.109 0.891 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.968 -24.461 -0.781 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.397 4.397 4 H 0.096 0.904 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.199 1.199 9 H -0.224 1.224 10 H -0.202 1.202 11 C 0.019 3.981 12 C -0.010 4.010 13 N -0.366 5.366 14 C 0.287 3.713 15 O -0.462 6.462 16 C -0.183 4.183 17 C 0.059 3.941 18 C -0.231 4.231 19 C -0.152 4.152 20 C -0.681 4.681 21 S 2.645 3.355 22 O -1.004 7.004 23 O -0.995 6.995 24 N -0.858 5.858 25 H 0.015 0.985 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.178 0.822 40 H 0.127 0.873 41 H 0.191 0.809 42 H 0.192 0.808 43 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 14.014 -24.378 0.751 28.129 hybrid contribution -0.259 1.947 -0.104 1.967 sum 13.755 -22.431 0.647 26.321 Atomic orbital electron populations 1.20584 0.82644 0.96403 0.97346 1.44170 1.02266 1.01754 1.85701 1.19577 0.98403 0.86420 1.35292 0.90442 1.25879 0.98418 1.02232 0.98565 1.70247 1.19347 1.27603 1.41529 0.85282 0.77535 0.79201 0.78064 1.19859 1.22403 1.20198 1.21143 0.97058 0.87380 0.92487 1.21802 0.94060 0.84397 1.00765 1.45959 1.57654 1.23529 1.09507 1.21536 0.79229 0.87468 0.83034 1.90606 1.56127 1.66771 1.32653 1.22392 1.03818 0.93645 0.98396 1.20622 0.83723 0.98123 0.91663 1.22496 1.00408 0.99711 1.00472 1.22722 0.96803 0.85711 1.09986 1.30606 1.12474 1.08712 1.16341 1.06891 0.76301 0.75878 0.76478 1.93545 1.39084 1.82636 1.85116 1.93582 1.83237 1.86153 1.36541 1.55135 1.27399 1.28828 1.74438 0.98543 0.96005 0.94670 0.94350 0.91565 0.90940 0.95458 0.95517 0.74608 0.85344 0.83552 0.92350 0.92816 0.89515 0.82206 0.87250 0.80891 0.80849 0.72976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.69 9.01 127.77 1.15 9.84 16 2 N -0.62 -30.21 2.93 -726.95 -2.13 -32.33 16 3 C -0.27 -14.43 9.67 84.03 0.81 -13.62 16 4 H 0.08 3.97 7.84 -2.91 -0.02 3.95 16 5 C -0.06 -3.15 5.13 84.86 0.44 -2.72 16 6 N -0.94 -56.75 10.58 21.65 0.23 -56.52 16 7 Si 0.97 45.14 29.57 68.60 2.03 47.17 16 8 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 9 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 C 0.15 5.30 5.82 86.38 0.50 5.80 16 12 C 0.12 4.34 6.00 86.38 0.52 4.85 16 13 N -0.71 -17.42 5.56 -463.04 -2.57 -20.00 16 14 C 0.50 12.23 7.32 87.66 0.64 12.87 16 15 O -0.58 -20.25 11.80 -3.04 -0.04 -20.28 16 16 C -0.14 -1.55 4.70 29.85 0.14 -1.41 16 17 C 0.15 2.02 0.83 3.68 0.00 2.03 16 18 C -0.17 -3.14 8.15 71.98 0.59 -2.55 16 19 C -0.11 -0.40 5.56 31.54 0.18 -0.23 16 20 C -0.55 -2.06 7.65 72.86 0.56 -1.50 16 21 S 2.54 48.80 6.46 -56.49 -0.36 48.43 16 22 O -1.01 -28.39 18.14 -127.79 -2.32 -30.71 16 23 O -1.01 -27.46 18.15 -127.79 -2.32 -29.78 16 24 N -1.09 -23.09 5.65 -152.03 -0.86 -23.95 16 25 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 26 H 0.02 1.15 7.19 -2.39 -0.02 1.13 16 27 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 28 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 29 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 30 H 0.07 2.20 7.86 -2.39 -0.02 2.18 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.42 6.40 8.47 -92.71 -0.79 5.61 16 34 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.15 0.42 8.04 -2.39 -0.02 0.40 16 36 H 0.06 1.60 5.35 -2.39 -0.01 1.59 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.16 -0.73 7.71 -2.39 -0.02 -0.75 16 40 H 0.11 0.34 7.83 -2.38 -0.02 0.32 16 41 H 0.17 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.17 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.43 11.69 7.26 -93.11 -0.68 11.02 16 Total: -1.00 -90.66 356.16 -3.24 -93.91 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -0.43 Total: 10.69 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.52 Total: 13.38 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -5.33 Total: -132.80 kcal Atomic # 8 Polarization: -76.10 SS G_CDS: -4.67 Total: -80.77 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 48.80 SS G_CDS: -0.36 Total: 48.43 kcal Total: -90.66 -3.24 -93.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690991301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.764 kcal (2) G-P(sol) polarization free energy of solvation -90.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds